Cow genome map

Conread name: Ss1.1-rski0137_h16.5

Conread position: 612-814
Cow position: chrX:17231770-17231972 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 140
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 81, 125

Conread position: 622-807
Cow position: chrX:22115272-22115086 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 139
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 76, 100

Conread position: 622-807
Cow position: chrX:34314069-34314249 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 129
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 88, 0

Conread position: 622-812
Cow position: chrX:20583711-20583893 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 137
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 84, 92

Conread position: 622-816
Cow position: chrX:22392939-22392751 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 134
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 90, 0

Conread position: 641-807
Cow position: chrX:4403381-4403546 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 119
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 66, 100

Conread position: 642-807
Cow position: chrX:5097734-5097566 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 126
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 19, 62

Conread position: 642-807
Cow position: chrX:9252098-9251935 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 58, 78

Conread position: 642-807
Cow position: chrX:41215387-41215551 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 64, 73

Conread position: 642-810
Cow position: chrX:27442474-27442307 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 120
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 67, 94

Conread position: 644-807
Cow position: chrX:19018764-19018600 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 119
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 63, 0

Conread position: 644-807
Cow position: chrX:42247115-42246953 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 62, 70

Conread position: 644-814
Cow position: chrX:11589300-11589132 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 128
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 61, 92

Conread position: 644-814
Cow position: chrX:11633749-11633918 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 56, 76

Conread position: 644-815
Cow position: chrX:42449947-42449777 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 59, 69

Conread position: 645-796
Cow position: chrX:34543852-34544003 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 54, 81

Conread position: 645-796
Cow position: chrX:42836249-42836398 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 61, 87

Conread position: 645-800
Cow position: chrX:31436542-31436690 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 61, 68

Conread position: 645-802
Cow position: chrX:35681635-35681790 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 58, 80

Conread position: 645-802
Cow position: chrX:40556391-40556240 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 52, 70

Conread position: 645-803
Cow position: chrX:24749153-24749311 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 114
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 53, 72

Conread position: 645-806
Cow position: chrX:39642554-39642401 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 61, 31

Conread position: 645-807
Cow position: chrX:12290787-12290946 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 62, 72

Conread position: 645-807
Cow position: chrX:20957306-20957465 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 65, 0

Conread position: 645-807
Cow position: chrX:23359046-23358889 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 118
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 65, 0

Conread position: 645-807
Cow position: chrX:27270443-27270597 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 127
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 29, 73

Conread position: 645-807
Cow position: chrX:27668890-27668734 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 61, 69

Conread position: 645-807
Cow position: chrX:28067918-28068079 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 117
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 55, 69

Conread position: 645-807
Cow position: chrX:31983517-31983350 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 61, 0

Conread position: 645-807
Cow position: chrX:35985886-35986043 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 126
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 45, 55

Conread position: 645-807
Cow position: chrX:42086895-42087054 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 118
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 65, 0

Conread position: 645-807
Cow position: chrX:42760320-42760481 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 48, 56

Conread position: 645-807
Cow position: chrX:44054870-44055031 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 117
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 58, 91

Conread position: 645-808
Cow position: chrX:42855526-42855692 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 119
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 61, 0

Conread position: 645-810
Cow position: chrX:4632789-4632623 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 51, 93

Conread position: 645-811
Cow position: chrX:27508954-27508792 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 121
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 80, 10

Conread position: 645-811
Cow position: chrX:46532427-46532258 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 120
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 58, 0

Conread position: 645-813
Cow position: chrX:151969-152139 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 120
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 71, 0

Conread position: 645-813
Cow position: chrX:4559801-4559968 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 120
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 64, 0

Conread position: 645-813
Cow position: chrX:35276053-35276220 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 45, 56

Conread position: 645-814
Cow position: chrX:2314551-2314383 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 121
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 61, 69

Conread position: 645-814
Cow position: chrX:8642114-8642280 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 124
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 48, 18

Conread position: 645-814
Cow position: chrX:11656149-11656313 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 128
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 61, 69

Conread position: 645-814
Cow position: chrX:14135746-14135910 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 126
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 61, 69

Conread position: 645-814
Cow position: chrX:23335908-23335740 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 120
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 61, 91

Conread position: 645-814
Cow position: chrX:24170661-24170490 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 122
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 61, 28

Conread position: 645-814
Cow position: chrX:24331844-24332012 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 61, 93

Conread position: 645-814
Cow position: chrX:25035314-25035147 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 61, 72

Conread position: 645-814
Cow position: chrX:27175066-27175235 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 58, 68

Conread position: 645-814
Cow position: chrX:27705654-27705821 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 62, 69

Conread position: 645-814
Cow position: chrX:33466692-33466858 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 131
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 58, 80

Conread position: 645-814
Cow position: chrX:35285241-35285411 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 61, 91

Conread position: 645-814
Cow position: chrX:35409820-35409987 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 48, 34

Conread position: 645-814
Cow position: chrX:41435481-41435307 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 124
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 61, 0

Conread position: 645-814
Cow position: chrX:43150499-43150666 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 120
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 67, 0

Conread position: 645-816
Cow position: chrX:17524316-17524147 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 133
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 62, 92

Conread position: 645-816
Cow position: chrX:34411914-34412088 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 126
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 61, 69

Conread position: 645-816
Cow position: chrX:40680682-40680852 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 65, 0

Conread position: 645-816
Cow position: chrX:41027227-41027399 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 125
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 61, 91

Conread position: 645-816
Cow position: chrX:41790361-41790190 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 126
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 61, 92

Conread position: 646-796
Cow position: chrX:6407613-6407761 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 60, 7

Conread position: 646-803
Cow position: chrX:1122478-1122323 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 115
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 52, 67

Conread position: 646-806
Cow position: chrX:41166756-41166602 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 117
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 63, 0

Conread position: 646-807
Cow position: chrX:25037056-25037220 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 118
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 62, 0

Conread position: 646-811
Cow position: chrX:20168627-20168787 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 66, 0

Conread position: 646-814
Cow position: chrX:25815832-25815665 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 50, 54

Conread position: 646-814
Cow position: chrX:30962808-30962640 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 121
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 47, 91

Conread position: 646-814
Cow position: chrX:37867322-37867489 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 120
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 57, 67

Conread position: 647-796
Cow position: chrX:34270631-34270778 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 46, 54

Conread position: 647-807
Cow position: chrX:13122008-13122172 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 53, 94

Conread position: 647-807
Cow position: chrX:41941693-41941851 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 56, 89

Conread position: 647-810
Cow position: chrX:10278940-10279106 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 56, 135

Conread position: 647-810
Cow position: chrX:12095702-12095540 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 128
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 57, 91

Conread position: 647-810
Cow position: chrX:16801193-16801036 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 58, 27

Conread position: 647-810
Cow position: chrX:47100527-47100363 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 59, 0

Conread position: 647-811
Cow position: chrX:33678403-33678238 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 43, 67

Conread position: 647-814
Cow position: chrX:51831-51668 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 58, 84

Conread position: 647-814
Cow position: chrX:29451481-29451310 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 123
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 49, 0

Conread position: 647-814
Cow position: chrX:46587892-46588055 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 54, 64

Conread position: 648-803
Cow position: chrX:26881494-26881338 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 114
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 60, 116

Conread position: 648-807
Cow position: chrX:6480525-6480367 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 58, 66

Conread position: 648-808
Cow position: chrX:28940313-28940473 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 18, 72

Conread position: 648-814
Cow position: chrX:19394624-19394791 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 50, 78

Conread position: 649-807
Cow position: chrX:6599710-6599546 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 57, 0

Conread position: 649-807
Cow position: chrX:40336982-40337139 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 51, 68

Conread position: 652-803
Cow position: chrX:4486949-4486800 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 47, 73

Conread position: 653-796
Cow position: chrX:30672314-30672167 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 53, 0

Conread position: 653-811
Cow position: chrX:31489596-31489753 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 116
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 53, 61

Conread position: 662-807
Cow position: chrX:19356548-19356692 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 108
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 41, 74

Conread position: 668-811
Cow position: chrX:4399210-4399350 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 30, 46

Show alignments to all cow chromosomes.