Cow genome map
| Conread name: | Ss1.1-rski0137_n4.5 |
| Conread position: | 445-575 |
| Cow position: | chr1:49082805-49082936 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 445-579 |
| Cow position: | chr1:34856566-34856431 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 445-586 |
| Cow position: | chr1:65318637-65318778 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 121, 40 |
| Conread position: | 445-590 |
| Cow position: | chr1:15102945-15103089 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 121, 63 |
| Conread position: | 445-590 |
| Cow position: | chr1:30028170-30028027 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 121, 50 |
| Conread position: | 445-590 |
| Cow position: | chr1:44814608-44814458 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 445-590 |
| Cow position: | chr1:45315574-45315426 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 445-590 |
| Cow position: | chr1:71664835-71664689 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 445-590 |
| Cow position: | chr1:74084129-74083983 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 445-590 |
| Cow position: | chr1:76613073-76612927 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 445-590 |
| Cow position: | chr1:80423670-80423527 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 31, 65 |
| Conread position: | 445-594 |
| Cow position: | chr1:62964328-62964478 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 122, 50 |
| Conread position: | 445-596 |
| Cow position: | chr1:96964378-96964530 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 445-598 |
| Cow position: | chr1:43352594-43352439 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 445-598 |
| Cow position: | chr1:47190933-47190781 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 445-598 |
| Cow position: | chr1:55428894-55428740 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 445-599 |
| Cow position: | chr1:73545849-73545694 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 445-599 |
| Cow position: | chr1:101714179-101714330 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 50, 59 |
| Conread position: | 445-600 |
| Cow position: | chr1:5751375-5751531 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 121, 85 |
| Conread position: | 445-600 |
| Cow position: | chr1:6731242-6731394 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 121, 71 |
| Conread position: | 445-600 |
| Cow position: | chr1:6790833-6790988 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 121, 148 |
| Conread position: | 445-600 |
| Cow position: | chr1:33720163-33720323 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 445-600 |
| Cow position: | chr1:42887215-42887065 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 121, 47 |
| Conread position: | 445-600 |
| Cow position: | chr1:60045047-60045202 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 66, 46 |
| Conread position: | 445-600 |
| Cow position: | chr1:61741906-61741749 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 445-600 |
| Cow position: | chr1:79718869-79719023 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 121, 9 |
| Conread position: | 445-600 |
| Cow position: | chr1:83246487-83246643 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 445-601 |
| Cow position: | chr1:39095550-39095701 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 445-602 |
| Cow position: | chr1:54258629-54258789 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 121, 9 |
| Conread position: | 445-602 |
| Cow position: | chr1:81568966-81568809 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 121, 63 |
| Conread position: | 445-602 |
| Cow position: | chr1:85622591-85622749 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 65, 46 |
| Conread position: | 445-603 |
| Cow position: | chr1:68817737-68817583 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 445-604 |
| Cow position: | chr1:77685919-77685759 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 445-606 |
| Cow position: | chr1:65160190-65160354 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 121, 19 |
| Conread position: | 445-608 |
| Cow position: | chr1:24133001-24132841 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 121, 63 |
| Conread position: | 445-608 |
| Cow position: | chr1:31806923-31807079 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 121, 50 |
| Conread position: | 445-609 |
| Cow position: | chr1:5284170-5284003 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 38, 161 |
| Conread position: | 445-609 |
| Cow position: | chr1:89146813-89146648 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 445-609 |
| Cow position: | chr1:100823099-100823262 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 121, 148 |
| Conread position: | 445-610 |
| Cow position: | chr1:1496470-1496302 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 445-610 |
| Cow position: | chr1:38706792-38706628 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 121, 57 |
| Conread position: | 445-610 |
| Cow position: | chr1:42175789-42175955 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 50, 62 |
| Conread position: | 445-610 |
| Cow position: | chr1:64804040-64803872 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 445-610 |
| Cow position: | chr1:73398012-73397847 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 120, 148 |
| Conread position: | 445-610 |
| Cow position: | chr1:98557057-98556894 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 118, 63 |
| Conread position: | 445-611 |
| Cow position: | chr1:53402843-53403010 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 445-611 |
| Cow position: | chr1:69411635-69411468 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 121, 103 |
| Conread position: | 445-611 |
| Cow position: | chr1:95152933-95153100 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 445-612 |
| Cow position: | chr1:22823967-22824139 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 445-615 |
| Cow position: | chr1:6590095-6590267 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 445-615 |
| Cow position: | chr1:90192478-90192651 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 64, 40 |
| Conread position: | 445-620 |
| Cow position: | chr1:68710340-68710519 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 445-622 |
| Cow position: | chr1:38419085-38419263 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 68, 122 |
| Conread position: | 445-623 |
| Cow position: | chr1:73020600-73020423 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 144, 122 |
| Conread position: | 445-624 |
| Cow position: | chr1:43379300-43379123 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 122, 74 |
| Conread position: | 445-624 |
| Cow position: | chr1:99637192-99637009 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 445-625 |
| Cow position: | chr1:36018721-36018548 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 121, 91 |
| Conread position: | 445-627 |
| Cow position: | chr1:79178690-79178871 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 121, 148 |
| Conread position: | 446-576 |
| Cow position: | chr1:84815193-84815326 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 446-579 |
| Cow position: | chr1:72813679-72813811 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 120, 101 |
| Conread position: | 446-590 |
| Cow position: | chr1:716524-716380 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 120, 62 |
| Conread position: | 446-590 |
| Cow position: | chr1:4294407-4294552 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 120, 57 |
| Conread position: | 446-610 |
| Cow position: | chr1:50906617-50906453 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 49, 57 |
| Conread position: | 446-619 |
| Cow position: | chr1:42796940-42797110 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 447-590 |
| Cow position: | chr1:7965910-7966052 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 119, 79 |
| Conread position: | 447-591 |
| Cow position: | chr1:98742081-98742222 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 119, 69 |
| Conread position: | 447-602 |
| Cow position: | chr1:64705963-64706120 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 448-588 |
| Cow position: | chr1:8133988-8134128 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 118, 55 |
| Conread position: | 450-611 |
| Cow position: | chr1:34767354-34767518 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 65, 147 |
| Conread position: | 451-610 |
| Cow position: | chr1:95835730-95835568 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 463-597 |
| Cow position: | chr1:4391191-4391056 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 463-597 |
| Cow position: | chr1:46245661-46245524 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 463-607 |
| Cow position: | chr1:100400126-100399987 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 103, 29 |
| Conread position: | 464-611 |
| Cow position: | chr1:42482278-42482426 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 100, 50 |
| Conread position: | 476-600 |
| Cow position: | chr1:71790057-71789933 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 90, 61 |
Show alignments to all cow chromosomes.