Cow genome map
| Conread name: | Ss1.1-rski0137_n4.5 |
| Conread position: | 445-576 |
| Cow position: | chr13:8667548-8667416 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 445-581 |
| Cow position: | chr13:6861110-6860971 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 445-586 |
| Cow position: | chr13:13320726-13320588 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 121, 50 |
| Conread position: | 445-590 |
| Cow position: | chr13:11103271-11103421 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 445-590 |
| Cow position: | chr13:27180970-27180824 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 445-590 |
| Cow position: | chr13:28081651-28081503 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 445-590 |
| Cow position: | chr13:28376631-28376775 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 121, 50 |
| Conread position: | 445-590 |
| Cow position: | chr13:44278277-44278133 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 59, 46 |
| Conread position: | 445-590 |
| Cow position: | chr13:46515990-46515846 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 51, 118 |
| Conread position: | 445-590 |
| Cow position: | chr13:53619933-53619787 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 445-593 |
| Cow position: | chr13:21246780-21246929 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 445-594 |
| Cow position: | chr13:11146986-11146836 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 445-594 |
| Cow position: | chr13:20042331-20042481 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 445-597 |
| Cow position: | chr13:242564-242412 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 121, 134 |
| Conread position: | 445-599 |
| Cow position: | chr13:20520244-20520087 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 445-599 |
| Cow position: | chr13:29665950-29665794 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 445-599 |
| Cow position: | chr13:57002655-57002500 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 59, 46 |
| Conread position: | 445-600 |
| Cow position: | chr13:3153679-3153524 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 121, 50 |
| Conread position: | 445-600 |
| Cow position: | chr13:21171643-21171795 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 121, 95 |
| Conread position: | 445-600 |
| Cow position: | chr13:23399695-23399543 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 121, 72 |
| Conread position: | 445-600 |
| Cow position: | chr13:43576943-43576787 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 121, 136 |
| Conread position: | 445-601 |
| Cow position: | chr13:18197679-18197831 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 42, 58 |
| Conread position: | 445-602 |
| Cow position: | chr13:8362814-8362974 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 445-607 |
| Cow position: | chr13:21288156-21288316 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 50, 58 |
| Conread position: | 445-608 |
| Cow position: | chr13:369194-369359 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 121, 26 |
| Conread position: | 445-608 |
| Cow position: | chr13:17624251-17624086 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 121, 33 |
| Conread position: | 445-608 |
| Cow position: | chr13:21275788-21275625 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 123, 104 |
| Conread position: | 445-608 |
| Cow position: | chr13:60509191-60509356 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 445-609 |
| Cow position: | chr13:10279854-10279689 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 59, 40 |
| Conread position: | 445-609 |
| Cow position: | chr13:14063592-14063754 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 121, 57 |
| Conread position: | 445-610 |
| Cow position: | chr13:10220890-10220725 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 121, 148 |
| Conread position: | 445-610 |
| Cow position: | chr13:13283272-13283105 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 50, 13 |
| Conread position: | 445-610 |
| Cow position: | chr13:15162703-15162870 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 445-611 |
| Cow position: | chr13:26316957-26317127 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 59, 46 |
| Conread position: | 445-613 |
| Cow position: | chr13:19279024-19278859 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 121, 63 |
| Conread position: | 445-614 |
| Cow position: | chr13:37069274-37069108 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 121, 139 |
| Conread position: | 445-615 |
| Cow position: | chr13:15993315-15993144 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 121, 9 |
| Conread position: | 445-616 |
| Cow position: | chr13:32283057-32282887 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 445-616 |
| Cow position: | chr13:54128667-54128841 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 121, 40 |
| Conread position: | 445-618 |
| Cow position: | chr13:15041544-15041714 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 121, 50 |
| Conread position: | 445-621 |
| Cow position: | chr13:53850753-53850577 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 50, 62 |
| Conread position: | 445-630 |
| Cow position: | chr13:34873518-34873331 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 121, 176 |
| Conread position: | 445-641 |
| Cow position: | chr13:21127408-21127602 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 51, 136 |
| Conread position: | 445-658 |
| Cow position: | chr13:21170455-21170248 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 50, 58 |
| Conread position: | 446-578 |
| Cow position: | chr13:24155442-24155309 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 446-600 |
| Cow position: | chr13:22115606-22115452 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 121, 108 |
| Conread position: | 446-610 |
| Cow position: | chr13:48127036-48126871 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 446-616 |
| Cow position: | chr13:17823022-17823188 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 120, 73 |
| Conread position: | 446-617 |
| Cow position: | chr13:45352959-45352788 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 120, 151 |
| Conread position: | 446-634 |
| Cow position: | chr13:8423333-8423148 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 145, 122 |
| Conread position: | 447-600 |
| Cow position: | chr13:15257440-15257590 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 48, 56 |
| Conread position: | 447-609 |
| Cow position: | chr13:20854529-20854692 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 62, 44 |
| Conread position: | 447-622 |
| Cow position: | chr13:13796884-13797061 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 67, 138 |
| Conread position: | 447-624 |
| Cow position: | chr13:28605464-28605640 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 119, 149 |
| Conread position: | 448-597 |
| Cow position: | chr13:8637624-8637474 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 448-622 |
| Cow position: | chr13:10924995-10925168 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 118, 25 |
| Conread position: | 450-579 |
| Cow position: | chr13:56958904-56958775 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 116, 13 |
| Conread position: | 451-598 |
| Cow position: | chr13:22729479-22729627 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 451-600 |
| Cow position: | chr13:16247571-16247421 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 451-611 |
| Cow position: | chr13:27146747-27146586 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 458-596 |
| Cow position: | chr13:52929351-52929212 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 458-620 |
| Cow position: | chr13:21024908-21024744 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 53, 143 |
| Conread position: | 458-620 |
| Cow position: | chr13:43577907-43577744 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 462-623 |
| Cow position: | chr13:33518042-33518205 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 463-609 |
| Cow position: | chr13:12876061-12876211 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 468-590 |
| Cow position: | chr13:30809467-30809588 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 27, 36 |
Show alignments to all cow chromosomes.