Cow genome map
| Conread name: | Ss1.1-rski0137_n4.5 |
| Conread position: | 445-586 |
| Cow position: | chr28:8259689-8259832 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 445-589 |
| Cow position: | chr28:2821319-2821464 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 445-590 |
| Cow position: | chr28:3011210-3011063 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 445-590 |
| Cow position: | chr28:4013145-4013287 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 121, 71 |
| Conread position: | 445-590 |
| Cow position: | chr28:8787601-8787744 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 50, 7 |
| Conread position: | 445-590 |
| Cow position: | chr28:17680683-17680829 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 51, 58 |
| Conread position: | 445-590 |
| Cow position: | chr28:17739883-17740029 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 445-590 |
| Cow position: | chr28:21868518-21868661 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 121, 57 |
| Conread position: | 445-593 |
| Cow position: | chr28:4282430-4282282 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 121, 50 |
| Conread position: | 445-593 |
| Cow position: | chr28:14657774-14657923 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 445-594 |
| Cow position: | chr28:19262526-19262376 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 445-596 |
| Cow position: | chr28:19994889-19994736 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 445-597 |
| Cow position: | chr28:6563836-6563683 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 445-600 |
| Cow position: | chr28:3311163-3311006 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 121, 150 |
| Conread position: | 445-600 |
| Cow position: | chr28:8165157-8164998 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 445-600 |
| Cow position: | chr28:11828901-11828746 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 122, 148 |
| Conread position: | 445-600 |
| Cow position: | chr28:16200682-16200526 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 445-600 |
| Cow position: | chr28:26304124-26304281 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 59, 114 |
| Conread position: | 445-601 |
| Cow position: | chr28:21845018-21845166 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 50, 58 |
| Conread position: | 445-601 |
| Cow position: | chr28:28903499-28903344 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 121, 73 |
| Conread position: | 445-604 |
| Cow position: | chr28:28765842-28765687 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 445-605 |
| Cow position: | chr28:5254935-5255094 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 121, 69 |
| Conread position: | 445-609 |
| Cow position: | chr28:117702-117536 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 30, 59 |
| Conread position: | 445-609 |
| Cow position: | chr28:118670-118836 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 30, 59 |
| Conread position: | 445-609 |
| Cow position: | chr28:4163522-4163354 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 445-609 |
| Cow position: | chr28:21118738-21118906 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 106, 102 |
| Conread position: | 445-610 |
| Cow position: | chr28:32014845-32015008 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 121, 66 |
| Conread position: | 445-611 |
| Cow position: | chr28:8347792-8347957 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 121, 157 |
| Conread position: | 445-612 |
| Cow position: | chr28:3759051-3759227 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 445-612 |
| Cow position: | chr28:5630159-5630328 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 121, 17 |
| Conread position: | 445-613 |
| Cow position: | chr28:13356310-13356140 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 62, 50 |
| Conread position: | 445-614 |
| Cow position: | chr28:8716327-8716151 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 445-616 |
| Cow position: | chr28:9705711-9705888 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 445-623 |
| Cow position: | chr28:3257049-3257232 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 50, 60 |
| Conread position: | 445-634 |
| Cow position: | chr28:6301142-6301337 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 445-658 |
| Cow position: | chr28:4884192-4883983 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 121, 51 |
| Conread position: | 446-610 |
| Cow position: | chr28:7644804-7644963 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 120, 17 |
| Conread position: | 446-625 |
| Cow position: | chr28:16159809-16159630 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 120, 56 |
| Conread position: | 446-627 |
| Cow position: | chr28:2892314-2892500 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 446-643 |
| Cow position: | chr28:1655031-1654830 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 54, 36 |
| Conread position: | 447-598 |
| Cow position: | chr28:17620299-17620147 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 447-618 |
| Cow position: | chr28:2077563-2077733 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 119, 64 |
| Conread position: | 451-612 |
| Cow position: | chr28:777742-777903 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 25, 52 |
| Conread position: | 457-588 |
| Cow position: | chr28:751298-751430 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 461-598 |
| Cow position: | chr28:19128098-19127960 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 464-625 |
| Cow position: | chr28:16964887-16964725 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 102, 150 |
Show alignments to all cow chromosomes.