Cow genome map
| Conread name: | Ss1.1-rski0137_n4.5 |
| Conread position: | 444-590 |
| Cow position: | chrX:31279842-31279699 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 122, 72 |
| Conread position: | 444-606 |
| Cow position: | chrX:4632775-4632606 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 444-610 |
| Cow position: | chrX:27668876-27668713 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 122, 73 |
| Conread position: | 444-613 |
| Cow position: | chrX:27446768-27446933 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 122, 86 |
| Conread position: | 445-576 |
| Cow position: | chrX:42247099-42246967 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 445-578 |
| Cow position: | chrX:34543867-34544002 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 445-586 |
| Cow position: | chrX:1122464-1122323 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 445-586 |
| Cow position: | chrX:4486941-4486800 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 120, 56 |
| Conread position: | 445-590 |
| Cow position: | chrX:31983502-31983350 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 445-590 |
| Cow position: | chrX:40336993-40337139 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 445-590 |
| Cow position: | chrX:41215405-41215551 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 445-591 |
| Cow position: | chrX:34411929-34412077 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 445-594 |
| Cow position: | chrX:27261275-27261422 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 445-594 |
| Cow position: | chrX:33678390-33678238 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 445-598 |
| Cow position: | chrX:11656164-11656314 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 121, 72 |
| Conread position: | 445-598 |
| Cow position: | chrX:11670769-11670923 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 445-598 |
| Cow position: | chrX:17498405-17498559 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 445-598 |
| Cow position: | chrX:27175081-27175236 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 445-598 |
| Cow position: | chrX:42381029-42380875 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 70, 114 |
| Conread position: | 445-599 |
| Cow position: | chrX:27705669-27705823 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 107, 101 |
| Conread position: | 445-600 |
| Cow position: | chrX:6407626-6407779 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 121, 139 |
| Conread position: | 445-600 |
| Cow position: | chrX:17524301-17524146 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 121, 148 |
| Conread position: | 445-600 |
| Cow position: | chrX:31489603-31489759 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 445-601 |
| Cow position: | chrX:51818-51664 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 121, 60 |
| Conread position: | 445-605 |
| Cow position: | chrX:2314536-2314373 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 445-605 |
| Cow position: | chrX:19018748-19018585 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 445-606 |
| Cow position: | chrX:44995582-44995745 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 445-607 |
| Cow position: | chrX:35285256-35285420 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 445-608 |
| Cow position: | chrX:25815818-25815654 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 68, 36 |
| Conread position: | 445-608 |
| Cow position: | chrX:41027242-41027408 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 445-609 |
| Cow position: | chrX:35276068-35276233 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 445-610 |
| Cow position: | chrX:14135761-14135927 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 32, 36 |
| Conread position: | 445-610 |
| Cow position: | chrX:15545965-15546128 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 121, 57 |
| Conread position: | 445-610 |
| Cow position: | chrX:42449931-42449759 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 445-610 |
| Cow position: | chrX:47100514-47100342 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 445-614 |
| Cow position: | chrX:26493089-26493257 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 59, 46 |
| Conread position: | 445-615 |
| Cow position: | chrX:4559816-4559987 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 445-615 |
| Cow position: | chrX:46587905-46588071 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 121, 66 |
| Conread position: | 445-616 |
| Cow position: | chrX:31436557-31436722 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 121, 50 |
| Conread position: | 445-616 |
| Cow position: | chrX:35509596-35509427 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 119, 67 |
| Conread position: | 445-620 |
| Cow position: | chrX:1938097-1938271 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 121, 60 |
| Conread position: | 446-590 |
| Cow position: | chrX:22115233-22115086 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 446-600 |
| Cow position: | chrX:40680698-40680853 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 446-616 |
| Cow position: | chrX:17231819-17231989 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 42, 136 |
| Conread position: | 446-648 |
| Cow position: | chrX:12095688-12095483 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 120, 193 |
| Conread position: | 447-590 |
| Cow position: | chrX:20957323-20957465 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 119, 134 |
| Conread position: | 447-598 |
| Cow position: | chrX:20339809-20339659 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 119, 111 |
| Conread position: | 447-600 |
| Cow position: | chrX:8642129-8642283 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 119, 130 |
| Conread position: | 447-600 |
| Cow position: | chrX:19356548-19356703 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 447-613 |
| Cow position: | chrX:30958815-30958983 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 140, 116 |
| Conread position: | 447-633 |
| Cow position: | chrX:4092009-4092197 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 141, 111 |
| Conread position: | 448-608 |
| Cow position: | chrX:1996366-1996204 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 448-608 |
| Cow position: | chrX:37867339-37867500 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 456-610 |
| Cow position: | chrX:8759715-8759870 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 24, 138 |
| Conread position: | 459-610 |
| Cow position: | chrX:4328086-4327932 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 107, 28 |
| Conread position: | 463-591 |
| Cow position: | chrX:28940346-28940473 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 103, 46 |
| Conread position: | 463-600 |
| Cow position: | chrX:4399220-4399356 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 103, 45 |
| Conread position: | 463-611 |
| Cow position: | chrX:41194006-41194154 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 103, 17 |
Show alignments to all cow chromosomes.