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Cow genome map

           
Conread name:
           
Ss1.1-rspc008_d12.5
        

               
Conread position:
               
194-445
               

               
Cow position:
               
chr12:6958448-6958201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
31, 86
               

               
Conread position:
               
214-496
               

               
Cow position:
               
chr12:26749758-26750015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
34, 72
               

               
Conread position:
               
217-445
               

               
Cow position:
               
chr12:43860459-43860681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
21, 30
               

               
Conread position:
               
218-512
               

               
Cow position:
               
chr12:4596659-4596383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
220-435
               

               
Cow position:
               
chr12:24186293-24186498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
222-412
               

               
Cow position:
               
chr12:11950340-11950152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
9, 87
               

               
Conread position:
               
227-418
               

               
Cow position:
               
chr12:4789872-4790065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
94, 12
               

               
Conread position:
               
227-449
               

               
Cow position:
               
chr12:34473431-34473643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
229-421
               

               
Cow position:
               
chr12:29770377-29770573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
91, 174
               

               
Conread position:
               
229-423
               

               
Cow position:
               
chr12:36012437-36012626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
229-445
               

               
Cow position:
               
chr12:27430696-27430488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
9, 78
               

               
Conread position:
               
229-447
               

               
Cow position:
               
chr12:34275820-34275598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
119, 16
               

               
Conread position:
               
229-448
               

               
Cow position:
               
chr12:41213998-41214206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
229-459
               

               
Cow position:
               
chr12:403684-403919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
98, 19
               

               
Conread position:
               
229-462
               

               
Cow position:
               
chr12:43551043-43551258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
222, 16
               

               
Conread position:
               
229-492
               

               
Cow position:
               
chr12:32419169-32419431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
19, 127
               

               
Conread position:
               
229-498
               

               
Cow position:
               
chr12:23836507-23836265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
229-500
               

               
Cow position:
               
chr12:42163217-42162978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
267, 48
               

               
Conread position:
               
229-501
               

               
Cow position:
               
chr12:42967168-42966931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
229-511
               

               
Cow position:
               
chr12:7086355-7086079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
147, 25
               

               
Conread position:
               
229-516
               

               
Cow position:
               
chr12:7110383-7110114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
229-516
               

               
Cow position:
               
chr12:35240928-35241189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
233-418
               

               
Cow position:
               
chr12:38002308-38002133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
114, 68
               

               
Conread position:
               
233-429
               

               
Cow position:
               
chr12:5543598-5543798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
115, 13
               

               
Conread position:
               
233-490
               

               
Cow position:
               
chr12:23764667-23764436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
233-492
               

               
Cow position:
               
chr12:3675343-3675587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
233-492
               

               
Cow position:
               
chr12:17487149-17486907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
100, 12
               

               
Conread position:
               
234-344
               

               
Cow position:
               
chr12:7515044-7514935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
234-425
               

               
Cow position:
               
chr12:39382790-39382597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
113, 20
               

               
Conread position:
               
234-444
               

               
Cow position:
               
chr12:15832375-15832176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
234-449
               

               
Cow position:
               
chr12:33319469-33319690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
114, 170
               

               
Conread position:
               
234-459
               

               
Cow position:
               
chr12:28651293-28651078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
209, 41
               

               
Conread position:
               
234-461
               

               
Cow position:
               
chr12:34165765-34165548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
152, 51
               

               
Conread position:
               
234-492
               

               
Cow position:
               
chr12:29018093-29017844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
113, 10
               

               
Conread position:
               
234-511
               

               
Cow position:
               
chr12:6720517-6720249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
114, 14
               

               
Conread position:
               
234-514
               

               
Cow position:
               
chr12:31883516-31883260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
234-516
               

               
Cow position:
               
chr12:32051690-32051425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
262, 67
               

               
Conread position:
               
234-516
               

               
Cow position:
               
chr12:40910116-40910377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
155, 20
               

               
Conread position:
               
234-516
               

               
Cow position:
               
chr12:42749611-42749354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
134, 11
               

               
Conread position:
               
235-445
               

               
Cow position:
               
chr12:25456591-25456390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
8, 88
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chr12:15163328-15163069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
15, 93
               

               
Conread position:
               
235-514
               

               
Cow position:
               
chr12:18523751-18523479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
196, 10
               

               
Conread position:
               
235-515
               

               
Cow position:
               
chr12:3879784-3880066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 78
               

               
Conread position:
               
235-516
               

               
Cow position:
               
chr12:31228754-31228488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
11, 74
               

               
Conread position:
               
235-516
               

               
Cow position:
               
chr12:44920227-44919948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
70, 121
               

               
Conread position:
               
236-437
               

               
Cow position:
               
chr12:4962822-4962624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
236-461
               

               
Cow position:
               
chr12:29200210-29200429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
220, 49
               

               
Conread position:
               
236-502
               

               
Cow position:
               
chr12:30919602-30919355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
237-442
               

               
Cow position:
               
chr12:28598438-28598248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
237-448
               

               
Cow position:
               
chr12:37584870-37584665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
11, 93
               

               
Conread position:
               
237-503
               

               
Cow position:
               
chr12:19502247-19502501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
85, 43
               

               
Conread position:
               
238-423
               

               
Cow position:
               
chr12:1106078-1106264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
10, 162
               

               
Conread position:
               
238-425
               

               
Cow position:
               
chr12:44622526-44622350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
238-496
               

               
Cow position:
               
chr12:36261860-36261625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
238-516
               

               
Cow position:
               
chr12:7000417-7000690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 110
               

               
Conread position:
               
239-408
               

               
Cow position:
               
chr12:23621839-23621667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
71, 113
               

               
Conread position:
               
239-448
               

               
Cow position:
               
chr12:23912814-23913032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
63, 120
               

               
Conread position:
               
239-449
               

               
Cow position:
               
chr12:18021043-18020836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
239-449
               

               
Cow position:
               
chr12:24568556-24568751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
239-489
               

               
Cow position:
               
chr12:25814322-25814090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
221, 61
               

               
Conread position:
               
239-492
               

               
Cow position:
               
chr12:27037251-27037510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
79, 171
               

               
Conread position:
               
239-509
               

               
Cow position:
               
chr12:46120652-46120910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
9, 19
               

               
Conread position:
               
239-511
               

               
Cow position:
               
chr12:6241489-6241238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
262, 75
               

               
Conread position:
               
239-511
               

               
Cow position:
               
chr12:22882246-22881974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
90, 129
               

               
Conread position:
               
239-515
               

               
Cow position:
               
chr12:8943048-8943306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
16, 69
               

               
Conread position:
               
240-445
               

               
Cow position:
               
chr12:22469685-22469494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
240-505
               

               
Cow position:
               
chr12:36993930-36994189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
84, 6
               

               
Conread position:
               
241-482
               

               
Cow position:
               
chr12:25445099-25444864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
113, 5
               

               
Conread position:
               
241-516
               

               
Cow position:
               
chr12:33976366-33976114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
261, 55
               

               
Conread position:
               
242-415
               

               
Cow position:
               
chr12:1848310-1848485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
96, 161
               

               
Conread position:
               
242-422
               

               
Cow position:
               
chr12:2241650-2241826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
58, 77
               

               
Conread position:
               
242-460
               

               
Cow position:
               
chr12:22341421-22341215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
242-501
               

               
Cow position:
               
chr12:29779716-29779983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
76, 169
               

               
Conread position:
               
242-516
               

               
Cow position:
               
chr12:4341573-4341826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
242-516
               

               
Cow position:
               
chr12:10942456-10942199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
142, 75
               

               
Conread position:
               
247-460
               

               
Cow position:
               
chr12:4014265-4014467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
190, 75
               

               
Conread position:
               
247-498
               

               
Cow position:
               
chr12:34148182-34148427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
125, 75
               

               
Conread position:
               
248-459
               

               
Cow position:
               
chr12:26357211-26357404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
203, 60
               

               
Conread position:
               
248-498
               

               
Cow position:
               
chr12:45167852-45168085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
248-502
               

               
Cow position:
               
chr12:46463895-46464138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
248, 99
               

               
Conread position:
               
248-504
               

               
Cow position:
               
chr12:18765789-18766045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
74, 32
               

               
Conread position:
               
253-398
               

               
Cow position:
               
chr12:3598560-3598703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
253-462
               

               
Cow position:
               
chr12:27572058-27572276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
56, 154
               

               
Conread position:
               
255-461
               

               
Cow position:
               
chr12:6225973-6226179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
59, 97
               

               
Conread position:
               
255-504
               

               
Cow position:
               
chr12:37993573-37993804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
255-514
               

               
Cow position:
               
chr12:23574919-23574678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
239, 59
               

               
Conread position:
               
257-498
               

               
Cow position:
               
chr12:4793378-4793131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
63, 153
               

               
Conread position:
               
258-516
               

               
Cow position:
               
chr12:31960054-31959801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
55, 147
               

               
Conread position:
               
265-516
               

               
Cow position:
               
chr12:19869617-19869383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
267-447
               

               
Cow position:
               
chr12:42698096-42698265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
280-516
               

               
Cow position:
               
chr12:14131627-14131851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
281-449
               

               
Cow position:
               
chr12:42143303-42143138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
66, 40
               

               
Conread position:
               
300-498
               

               
Cow position:
               
chr12:14223108-14222916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
17, 31
               

               
Conread position:
               
300-511
               

               
Cow position:
               
chr12:48415394-48415596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
193, 16
               

               
Conread position:
               
300-516
               

               
Cow position:
               
chr12:23916964-23916757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
196, 16
               

               
Conread position:
               
303-499
               

               
Cow position:
               
chr12:29057512-29057320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
303-501
               

               
Cow position:
               
chr12:18518794-18518604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
303-501
               

               
Cow position:
               
chr12:38774123-38774312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
189, 13
               

               
Conread position:
               
303-501
               

               
Cow position:
               
chr12:42181006-42181199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
30, 15
               

               
Conread position:
               
303-514
               

               
Cow position:
               
chr12:40157906-40158103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
303-516
               

               
Cow position:
               
chr12:3623813-3623608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
190, 15
               

               
Conread position:
               
303-516
               

               
Cow position:
               
chr12:11587893-11587687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
190, 13
               

               
Conread position:
               
303-516
               

               
Cow position:
               
chr12:42254791-42254581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
24, 55
               

               
Conread position:
               
304-505
               

               
Cow position:
               
chr12:7920368-7920167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
31, 99
               

               
Conread position:
               
308-431
               

               
Cow position:
               
chr12:34459781-34459656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
21, 93
               

               
Conread position:
               
310-511
               

               
Cow position:
               
chr12:7978149-7977962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
74, 25
               

               
Conread position:
               
311-498
               

               
Cow position:
               
chr12:7657217-7657407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
18, 67
               

               
Conread position:
               
311-501
               

               
Cow position:
               
chr12:31532290-31532469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
314-513
               

               
Cow position:
               
chr12:2711613-2711413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
21, 86
               

               
Conread position:
               
314-516
               

               
Cow position:
               
chr12:26217713-26217912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
182, 20
               

               
Conread position:
               
315-515
               

               
Cow position:
               
chr12:41581219-41581033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
60, 32
               

               
Conread position:
               
318-516
               

               
Cow position:
               
chr12:18943551-18943744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
175, 30
               

               
Conread position:
               
318-516
               

               
Cow position:
               
chr12:29995356-29995546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
186, 80
               

               
Conread position:
               
320-492
               

               
Cow position:
               
chr12:45014788-45014619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
44, 79
               

               
Conread position:
               
320-500
               

               
Cow position:
               
chr12:4866921-4866748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
172, 6
               

               
Conread position:
               
320-515
               

               
Cow position:
               
chr12:23446824-23446635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
174, 12
               

               
Conread position:
               
325-473
               

               
Cow position:
               
chr12:30226832-30226982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
126, 74
               

               
Conread position:
               
325-501
               

               
Cow position:
               
chr12:45090252-45090419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
325-512
               

               
Cow position:
               
chr12:30661854-30662031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
64, 9
               

               
Conread position:
               
325-515
               

               
Cow position:
               
chr12:29969681-29969494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
12, 33
               

               
Conread position:
               
326-497
               

               
Cow position:
               
chr12:4797402-4797235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
7, 73
               

               
Conread position:
               
327-478
               

               
Cow position:
               
chr12:25441741-25441594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
21, 59
               

               
Conread position:
               
327-512
               

               
Cow position:
               
chr12:36041660-36041841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
35, 31
               

               
Conread position:
               
327-516
               

               
Cow position:
               
chr12:5635357-5635535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
327-516
               

               
Cow position:
               
chr12:9914889-9914703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
21, 73
               

               
Conread position:
               
328-516
               

               
Cow position:
               
chr12:18103515-18103697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
61, 28
               

               
Conread position:
               
328-516
               

               
Cow position:
               
chr12:41474188-41474001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
20, 74
               

               
Conread position:
               
331-448
               

               
Cow position:
               
chr12:24397069-24397184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
331-462
               

               
Cow position:
               
chr12:3586214-3586082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
17, 68
               

               
Conread position:
               
331-496
               

               
Cow position:
               
chr12:7457449-7457607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
17, 69
               

               
Conread position:
               
331-497
               

               
Cow position:
               
chr12:45001972-45002132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
17, 40
               

               
Conread position:
               
331-502
               

               
Cow position:
               
chr12:5609416-5609577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
17, 69
               

               
Conread position:
               
331-504
               

               
Cow position:
               
chr12:29966196-29966036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
331-514
               

               
Cow position:
               
chr12:21780257-21780080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
331-515
               

               
Cow position:
               
chr12:27192268-27192455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
19, 45
               

               
Conread position:
               
331-516
               

               
Cow position:
               
chr12:24152435-24152251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
48, 69
               

               
Conread position:
               
331-516
               

               
Cow position:
               
chr12:30590862-30590681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
331-516
               

               
Cow position:
               
chr12:35368738-35368555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
17, 55
               

               
Conread position:
               
331-516
               

               
Cow position:
               
chr12:35770925-35771105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
22, 69
               

               
Conread position:
               
331-516
               

               
Cow position:
               
chr12:41159683-41159504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
17, 68
               

               
Conread position:
               
332-499
               

               
Cow position:
               
chr12:16056763-16056925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
16, 68
               

               
Conread position:
               
332-510
               

               
Cow position:
               
chr12:47267216-47267387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
332-512
               

               
Cow position:
               
chr12:17774887-17774713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
32, 16
               

               
Conread position:
               
332-513
               

               
Cow position:
               
chr12:27176735-27176551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
18, 44
               

               
Conread position:
               
332-516
               

               
Cow position:
               
chr12:6410641-6410820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
81, 16
               

               
Conread position:
               
332-516
               

               
Cow position:
               
chr12:20479245-20479415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
333-497
               

               
Cow position:
               
chr12:15260855-15260698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
334-461
               

               
Cow position:
               
chr12:44542357-44542231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
122, 17
               

               
Conread position:
               
334-462
               

               
Cow position:
               
chr12:22859554-22859431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
116, 14
               

               
Conread position:
               
334-495
               

               
Cow position:
               
chr12:9482214-9482370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
334-498
               

               
Cow position:
               
chr12:4720038-4719881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
334-499
               

               
Cow position:
               
chr12:1701712-1701872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
14, 66
               

               
Conread position:
               
334-502
               

               
Cow position:
               
chr12:4769015-4768854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
160, 16
               

               
Conread position:
               
334-506
               

               
Cow position:
               
chr12:27621941-27622115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
16, 53
               

               
Conread position:
               
334-514
               

               
Cow position:
               
chr12:39663108-39663280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
334-516
               

               
Cow position:
               
chr12:30753812-30753637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
19, 64
               

               
Conread position:
               
334-516
               

               
Cow position:
               
chr12:30805951-30805768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
14, 66
               

               
Conread position:
               
334-516
               

               
Cow position:
               
chr12:31517081-31517259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
166, 14
               

               
Conread position:
               
335-493
               

               
Cow position:
               
chr12:43854983-43854832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
146, 13
               

               
Conread position:
               
335-500
               

               
Cow position:
               
chr12:7902710-7902872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
125, 13
               

               
Conread position:
               
335-511
               

               
Cow position:
               
chr12:11836326-11836157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
17, 64
               

               
Conread position:
               
335-516
               

               
Cow position:
               
chr12:3197356-3197184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
158, 13
               

               
Conread position:
               
335-516
               

               
Cow position:
               
chr12:15173913-15173738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
157, 13
               

               
Conread position:
               
336-510
               

               
Cow position:
               
chr12:37008618-37008784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
158, 12
               

               
Conread position:
               
338-471
               

               
Cow position:
               
chr12:14987888-14987753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
10, 59
               

               
Conread position:
               
338-493
               

               
Cow position:
               
chr12:7311469-7311319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
83, 90
               

               
Conread position:
               
338-516
               

               
Cow position:
               
chr12:5714714-5714542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
155, 25
               

               
Conread position:
               
339-513
               

               
Cow position:
               
chr12:6210071-6210240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
162, 60
               

               
Conread position:
               
339-515
               

               
Cow position:
               
chr12:44595722-44595896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
8, 60
               

               
Conread position:
               
339-516
               

               
Cow position:
               
chr12:17881949-17881775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
9, 60
               

               
Conread position:
               
339-516
               

               
Cow position:
               
chr12:44517652-44517822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
157, 9
               

               
Conread position:
               
341-511
               

               
Cow position:
               
chr12:5940426-5940262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
341-515
               

               
Cow position:
               
chr12:34161498-34161331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
341-516
               

               
Cow position:
               
chr12:28213593-28213429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
345-516
               

               
Cow position:
               
chr12:30438317-30438155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
156, 13
               

               
Conread position:
               
346-516
               

               
Cow position:
               
chr12:25188268-25188100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
150, 47
               

               
Conread position:
               
347-492
               

               
Cow position:
               
chr12:15700159-15700018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
65, 49
               

               
Conread position:
               
347-495
               

               
Cow position:
               
chr12:45069305-45069450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
42, 106
               

               
Conread position:
               
347-500
               

               
Cow position:
               
chr12:4162276-4162431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
52, 111
               

               
Conread position:
               
347-516
               

               
Cow position:
               
chr12:16147568-16147399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
83, 51
               

               
Conread position:
               
347-516
               

               
Cow position:
               
chr12:24023723-24023885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
347-516
               

               
Cow position:
               
chr12:42286050-42285882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
10, 53
               

               
Conread position:
               
348-492
               

               
Cow position:
               
chr12:9229422-9229560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
348-498
               

               
Cow position:
               
chr12:6754274-6754130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
348-515
               

               
Cow position:
               
chr12:36790734-36790893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
348-516
               

               
Cow position:
               
chr12:28582432-28582590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
145, 27
               

               
Conread position:
               
348-516
               

               
Cow position:
               
chr12:42234137-42233970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
145, 22
               

               
Conread position:
               
349-516
               

               
Cow position:
               
chr12:30210560-30210394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
144, 49
               

               
Conread position:
               
350-516
               

               
Cow position:
               
chr12:45680353-45680194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
40, 35
               

               
Conread position:
               
351-509
               

               
Cow position:
               
chr12:31429496-31429644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
352-516
               

               
Cow position:
               
chr12:4135151-4134991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
144, 49
               

               
Conread position:
               
352-516
               

               
Cow position:
               
chr12:7960510-7960670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
141, 39
               

               
Conread position:
               
354-501
               

               
Cow position:
               
chr12:23855904-23855770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
362-514
               

               
Cow position:
               
chr12:18963864-18964011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
131, 37
               

               
Conread position:
               
374-516
               

               
Cow position:
               
chr12:25452395-25452533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
122, 25
               
Show alignments to all cow chromosomes.