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Cow genome map

           
Conread name:
           
Ss1.1-rspc008_f14.5
        

               
Conread position:
               
78-318
               

               
Cow position:
               
chr28:19395115-19394873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
26, 5
               

               
Conread position:
               
81-260
               

               
Cow position:
               
chr28:18740250-18740430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
25, 15
               

               
Conread position:
               
87-346
               

               
Cow position:
               
chr28:7618925-7619175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
126, 29
               

               
Conread position:
               
88-262
               

               
Cow position:
               
chr28:16177489-16177314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
24, 38
               

               
Conread position:
               
89-315
               

               
Cow position:
               
chr28:9109450-9109223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
13, 137
               

               
Conread position:
               
89-346
               

               
Cow position:
               
chr28:24966620-24966363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
119, 29
               

               
Conread position:
               
89-347
               

               
Cow position:
               
chr28:3143647-3143898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
90-346
               

               
Cow position:
               
chr28:24707124-24706873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
71, 28
               

               
Conread position:
               
91-301
               

               
Cow position:
               
chr28:17620124-17620339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
103, 37
               

               
Conread position:
               
93-345
               

               
Cow position:
               
chr28:10298072-10297833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
96-298
               

               
Cow position:
               
chr28:11827917-11827712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
92, 20
               

               
Conread position:
               
99-331
               

               
Cow position:
               
chr28:4307666-4307906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
100, 36
               

               
Conread position:
               
99-346
               

               
Cow position:
               
chr28:11307291-11307542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
95, 29
               

               
Conread position:
               
99-348
               

               
Cow position:
               
chr28:10495073-10495323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
89, 29
               

               
Conread position:
               
100-336
               

               
Cow position:
               
chr28:12951646-12951409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
5, 146
               

               
Conread position:
               
101-266
               

               
Cow position:
               
chr28:32372462-32372301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
101-347
               

               
Cow position:
               
chr28:29416499-29416741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
102-348
               

               
Cow position:
               
chr28:5144290-5144548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
85, 16
               

               
Conread position:
               
104-288
               

               
Cow position:
               
chr28:8936368-8936184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
102, 14
               

               
Conread position:
               
104-309
               

               
Cow position:
               
chr28:7132156-7132369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
11, 30
               

               
Conread position:
               
106-344
               

               
Cow position:
               
chr28:32366038-32365822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
108-324
               

               
Cow position:
               
chr28:5684920-5684701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
16, 120
               

               
Conread position:
               
108-329
               

               
Cow position:
               
chr28:8787758-8787533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
86, 153
               

               
Conread position:
               
108-348
               

               
Cow position:
               
chr28:14495021-14494799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
109-295
               

               
Cow position:
               
chr28:2077718-2077527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
96, 19
               

               
Conread position:
               
109-297
               

               
Cow position:
               
chr28:118831-118634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
62, 19
               

               
Conread position:
               
109-298
               

               
Cow position:
               
chr28:32015002-32014808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
82, 19
               

               
Conread position:
               
109-334
               

               
Cow position:
               
chr28:5138784-5139003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
95, 16
               

               
Conread position:
               
109-334
               

               
Cow position:
               
chr28:21868672-21868445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
94, 16
               

               
Conread position:
               
109-336
               

               
Cow position:
               
chr28:9426134-9426365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
109-346
               

               
Cow position:
               
chr28:13133852-13133608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
97, 25
               

               
Conread position:
               
109-347
               

               
Cow position:
               
chr28:13245781-13245536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
85, 25
               

               
Conread position:
               
109-347
               

               
Cow position:
               
chr28:15272053-15272298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
77, 19
               

               
Conread position:
               
110-286
               

               
Cow position:
               
chr28:11562028-11562210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
80, 8
               

               
Conread position:
               
110-287
               

               
Cow position:
               
chr28:28903341-28903525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
110-326
               

               
Cow position:
               
chr28:12974101-12973877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
110-346
               

               
Cow position:
               
chr28:22133124-22132887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
78, 18
               

               
Conread position:
               
111-301
               

               
Cow position:
               
chr28:5609703-5609896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
76, 17
               

               
Conread position:
               
111-301
               

               
Cow position:
               
chr28:31223341-31223540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
111-316
               

               
Cow position:
               
chr28:117543-117757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
60, 17
               

               
Conread position:
               
111-329
               

               
Cow position:
               
chr28:21207160-21207374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
11, 83
               

               
Conread position:
               
111-340
               

               
Cow position:
               
chr28:8259851-8259610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
111-347
               

               
Cow position:
               
chr28:3410772-3411012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
112-266
               

               
Cow position:
               
chr28:27787779-27787622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
112-278
               

               
Cow position:
               
chr28:21118894-21118721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
82, 21
               

               
Conread position:
               
112-285
               

               
Cow position:
               
chr28:1930695-1930859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
91, 8
               

               
Conread position:
               
112-298
               

               
Cow position:
               
chr28:2892470-2892276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
82, 16
               

               
Conread position:
               
112-315
               

               
Cow position:
               
chr28:20046756-20046560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
112-317
               

               
Cow position:
               
chr28:4022885-4022678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
82, 22
               

               
Conread position:
               
112-324
               

               
Cow position:
               
chr28:4163366-4163581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
82, 16
               

               
Conread position:
               
112-330
               

               
Cow position:
               
chr28:8304455-8304239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
190, 8
               

               
Conread position:
               
112-334
               

               
Cow position:
               
chr28:10978053-10977829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
76, 53
               

               
Conread position:
               
112-336
               

               
Cow position:
               
chr28:14242910-14242678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
78, 16
               

               
Conread position:
               
112-336
               

               
Cow position:
               
chr28:19015915-19015702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
82, 18
               

               
Conread position:
               
112-345
               

               
Cow position:
               
chr28:7697765-7698001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
76, 21
               

               
Conread position:
               
112-346
               

               
Cow position:
               
chr28:22571470-22571686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
112-347
               

               
Cow position:
               
chr28:3449523-3449278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
94, 16
               

               
Conread position:
               
112-347
               

               
Cow position:
               
chr28:5630313-5630073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
76, 16
               

               
Conread position:
               
113-335
               

               
Cow position:
               
chr28:11866455-11866678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 15
               

               
Conread position:
               
113-336
               

               
Cow position:
               
chr28:6283277-6283502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
81, 15
               

               
Conread position:
               
113-346
               

               
Cow position:
               
chr28:13356153-13356391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
88, 21
               

               
Conread position:
               
114-259
               

               
Cow position:
               
chr28:22170069-22170217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
114-330
               

               
Cow position:
               
chr28:18934648-18934446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
124, 72
               

               
Conread position:
               
114-345
               

               
Cow position:
               
chr28:17680839-17680599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
114-346
               

               
Cow position:
               
chr28:30607983-30608210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
16, 45
               

               
Conread position:
               
116-347
               

               
Cow position:
               
chr28:662313-662082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
12, 80
               

               
Conread position:
               
116-347
               

               
Cow position:
               
chr28:21046378-21046600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
116-347
               

               
Cow position:
               
chr28:23460354-23460125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
78, 17
               

               
Conread position:
               
117-302
               

               
Cow position:
               
chr28:2151229-2151420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
7, 36
               

               
Conread position:
               
117-329
               

               
Cow position:
               
chr28:3492576-3492790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
7, 185
               

               
Conread position:
               
117-348
               

               
Cow position:
               
chr28:23793109-23793337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
11, 36
               

               
Conread position:
               
118-251
               

               
Cow position:
               
chr28:16000831-16000967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
118-263
               

               
Cow position:
               
chr28:3727185-3727046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
118-264
               

               
Cow position:
               
chr28:3257200-3257046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
118-282
               

               
Cow position:
               
chr28:16200531-16200703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
118-306
               

               
Cow position:
               
chr28:7644955-7644756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
14, 131
               

               
Conread position:
               
118-312
               

               
Cow position:
               
chr28:8681228-8681419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
118-317
               

               
Cow position:
               
chr28:2777739-2777535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
118-317
               

               
Cow position:
               
chr28:17737942-17738150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
73, 10
               

               
Conread position:
               
118-328
               

               
Cow position:
               
chr28:6358202-6358420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
76, 16
               

               
Conread position:
               
118-329
               

               
Cow position:
               
chr28:10588825-10589028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
118-330
               

               
Cow position:
               
chr28:3445270-3445489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
20, 160
               

               
Conread position:
               
118-333
               

               
Cow position:
               
chr28:1532214-1531996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
93, 15
               

               
Conread position:
               
118-334
               

               
Cow position:
               
chr28:6563686-6563910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
73, 15
               

               
Conread position:
               
118-336
               

               
Cow position:
               
chr28:3725999-3726225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
118-336
               

               
Cow position:
               
chr28:10480593-10480821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
15, 149
               

               
Conread position:
               
118-345
               

               
Cow position:
               
chr28:3011059-3011292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
69, 10
               

               
Conread position:
               
118-347
               

               
Cow position:
               
chr28:3484795-3484557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
70, 132
               

               
Conread position:
               
118-347
               

               
Cow position:
               
chr28:12991344-12991111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
174, 76
               

               
Conread position:
               
118-348
               

               
Cow position:
               
chr28:4809977-4809753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
90, 7
               

               
Conread position:
               
118-348
               

               
Cow position:
               
chr28:9740667-9740440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
42, 68
               

               
Conread position:
               
119-290
               

               
Cow position:
               
chr28:21744919-21744747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
85, 9
               

               
Conread position:
               
119-301
               

               
Cow position:
               
chr28:3423985-3423798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
119-347
               

               
Cow position:
               
chr28:26982528-26982763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
120-347
               

               
Cow position:
               
chr28:7008774-7009003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
120-348
               

               
Cow position:
               
chr28:5193530-5193305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
130, 40
               

               
Conread position:
               
121-234
               

               
Cow position:
               
chr28:4923609-4923498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
121-266
               

               
Cow position:
               
chr28:4588520-4588374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
83, 21
               

               
Conread position:
               
121-266
               

               
Cow position:
               
chr28:7750814-7750960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
121-266
               

               
Cow position:
               
chr28:12691350-12691213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
121-281
               

               
Cow position:
               
chr28:4027263-4027422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
66, 81
               

               
Conread position:
               
121-281
               

               
Cow position:
               
chr28:22500300-22500457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
32, 58
               

               
Conread position:
               
121-285
               

               
Cow position:
               
chr28:24651397-24651569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
27, 9
               

               
Conread position:
               
121-288
               

               
Cow position:
               
chr28:17943930-17943764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
89, 34
               

               
Conread position:
               
121-295
               

               
Cow position:
               
chr28:16252203-16252377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
80, 13
               

               
Conread position:
               
121-297
               

               
Cow position:
               
chr28:13269924-13269752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
121-301
               

               
Cow position:
               
chr28:7964473-7964657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
103, 7
               

               
Conread position:
               
121-301
               

               
Cow position:
               
chr28:10959005-10958823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
121-308
               

               
Cow position:
               
chr28:30326896-30327074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
121-324
               

               
Cow position:
               
chr28:11411333-11411538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
171, 0
               

               
Conread position:
               
121-324
               

               
Cow position:
               
chr28:17727906-17728101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
121-328
               

               
Cow position:
               
chr28:16369883-16370089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
85, 52
               

               
Conread position:
               
121-330
               

               
Cow position:
               
chr28:777882-777667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
121-330
               

               
Cow position:
               
chr28:4182207-4181993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
83, 61
               

               
Conread position:
               
121-330
               

               
Cow position:
               
chr28:11884325-11884529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
121-330
               

               
Cow position:
               
chr28:16918968-16919176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
121-330
               

               
Cow position:
               
chr28:25057162-25056958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
85, 34
               

               
Conread position:
               
121-332
               

               
Cow position:
               
chr28:5436880-5437095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
73, 133
               

               
Conread position:
               
121-332
               

               
Cow position:
               
chr28:6643093-6643292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
121-333
               

               
Cow position:
               
chr28:7014660-7014442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
121-333
               

               
Cow position:
               
chr28:23296525-23296311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
121-334
               

               
Cow position:
               
chr28:4071164-4070955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
182, 31
               

               
Conread position:
               
121-334
               

               
Cow position:
               
chr28:4101718-4101508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
55, 68
               

               
Conread position:
               
121-334
               

               
Cow position:
               
chr28:20124987-20124772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
121-335
               

               
Cow position:
               
chr28:4013289-4013071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
121-335
               

               
Cow position:
               
chr28:7371904-7372135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
57, 44
               

               
Conread position:
               
121-336
               

               
Cow position:
               
chr28:9812488-9812264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
63, 7
               

               
Conread position:
               
121-336
               

               
Cow position:
               
chr28:11743622-11743833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
73, 44
               

               
Conread position:
               
121-336
               

               
Cow position:
               
chr28:13474505-13474286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
121-341
               

               
Cow position:
               
chr28:17012099-17012313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
132, 31
               

               
Conread position:
               
121-342
               

               
Cow position:
               
chr28:31165794-31166002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
8, 70
               

               
Conread position:
               
121-344
               

               
Cow position:
               
chr28:4643564-4643792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
121-344
               

               
Cow position:
               
chr28:34843366-34843594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
69, 160
               

               
Conread position:
               
121-345
               

               
Cow position:
               
chr28:5931550-5931334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
83, 36
               

               
Conread position:
               
121-345
               

               
Cow position:
               
chr28:25249541-25249331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
121-345
               

               
Cow position:
               
chr28:32179905-32179674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
36, 179
               

               
Conread position:
               
121-346
               

               
Cow position:
               
chr28:16085525-16085301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
22, 54
               

               
Conread position:
               
121-347
               

               
Cow position:
               
chr28:4834636-4834869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
10, 50
               

               
Conread position:
               
121-347
               

               
Cow position:
               
chr28:4881043-4881264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
85, 25
               

               
Conread position:
               
121-347
               

               
Cow position:
               
chr28:5074315-5074532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
121-347
               

               
Cow position:
               
chr28:5236080-5235857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
121-347
               

               
Cow position:
               
chr28:11814873-11815103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
121-347
               

               
Cow position:
               
chr28:19217018-19216797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
121-347
               

               
Cow position:
               
chr28:19564029-19564253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
121-347
               

               
Cow position:
               
chr28:20409597-20409367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
70, 151
               

               
Conread position:
               
121-347
               

               
Cow position:
               
chr28:23724263-23724487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
133, 73
               

               
Conread position:
               
121-347
               

               
Cow position:
               
chr28:34230436-34230203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
85, 13
               

               
Conread position:
               
121-348
               

               
Cow position:
               
chr28:11346283-11346513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
121-348
               

               
Cow position:
               
chr28:13527403-13527170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
78, 7
               

               
Conread position:
               
121-348
               

               
Cow position:
               
chr28:16214679-16214897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
122-266
               

               
Cow position:
               
chr28:3311015-3311168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
122-277
               

               
Cow position:
               
chr28:16767404-16767551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
122-282
               

               
Cow position:
               
chr28:18791239-18791079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
82, 158
               

               
Conread position:
               
122-290
               

               
Cow position:
               
chr28:5200032-5199856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
122-298
               

               
Cow position:
               
chr28:26820071-26820255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
81, 136
               

               
Conread position:
               
122-298
               

               
Cow position:
               
chr28:27445370-27445549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
122-320
               

               
Cow position:
               
chr28:10196665-10196864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
82, 66
               

               
Conread position:
               
122-320
               

               
Cow position:
               
chr28:11398589-11398795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
122-320
               

               
Cow position:
               
chr28:26574605-26574413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
178, 35
               

               
Conread position:
               
122-321
               

               
Cow position:
               
chr28:24996413-24996612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
40, 101
               

               
Conread position:
               
122-324
               

               
Cow position:
               
chr28:23531068-23530872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
122-324
               

               
Cow position:
               
chr28:30902326-30902124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
122-329
               

               
Cow position:
               
chr28:33884607-33884395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
57, 131
               

               
Conread position:
               
122-330
               

               
Cow position:
               
chr28:9705861-9705645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
47, 167
               

               
Conread position:
               
122-330
               

               
Cow position:
               
chr28:21845156-21844950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
89, 30
               

               
Conread position:
               
122-330
               

               
Cow position:
               
chr28:32358309-32358100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
72, 157
               

               
Conread position:
               
122-334
               

               
Cow position:
               
chr28:5255075-5254862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
84, 6
               

               
Conread position:
               
122-334
               

               
Cow position:
               
chr28:6091561-6091347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
99, 72
               

               
Conread position:
               
122-335
               

               
Cow position:
               
chr28:10964613-10964410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
16, 73
               

               
Conread position:
               
122-339
               

               
Cow position:
               
chr28:8291618-8291412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
89, 72
               

               
Conread position:
               
122-343
               

               
Cow position:
               
chr28:8347939-8347710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
122-343
               

               
Cow position:
               
chr28:15362782-15362558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
84, 11
               

               
Conread position:
               
122-345
               

               
Cow position:
               
chr28:4937034-4937265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
122-345
               

               
Cow position:
               
chr28:12598541-12598316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
82, 212
               

               
Conread position:
               
122-347
               

               
Cow position:
               
chr28:11059696-11059477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
92, 101
               

               
Conread position:
               
122-347
               

               
Cow position:
               
chr28:26719535-26719319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
122-347
               

               
Cow position:
               
chr28:33322656-33322432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
79, 11
               

               
Conread position:
               
122-348
               

               
Cow position:
               
chr28:9100134-9099909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
6, 25
               

               
Conread position:
               
123-315
               

               
Cow position:
               
chr28:10203316-10203126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
85, 109
               

               
Conread position:
               
123-317
               

               
Cow position:
               
chr28:20968372-20968575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
123-334
               

               
Cow position:
               
chr28:9285173-9285382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
67, 143
               

               
Conread position:
               
124-254
               

               
Cow position:
               
chr28:5428555-5428686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
80, 27
               

               
Conread position:
               
125-337
               

               
Cow position:
               
chr28:7157014-7156822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
125-344
               

               
Cow position:
               
chr28:22813450-22813241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
81, 66
               

               
Conread position:
               
125-346
               

               
Cow position:
               
chr28:1099475-1099683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
125-348
               

               
Cow position:
               
chr28:10606436-10606651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
69, 45
               

               
Conread position:
               
126-252
               

               
Cow position:
               
chr28:10140385-10140513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
58, 40
               

               
Conread position:
               
126-266
               

               
Cow position:
               
chr28:8283501-8283648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
52, 81
               

               
Conread position:
               
126-266
               

               
Cow position:
               
chr28:9070086-9069944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
126-293
               

               
Cow position:
               
chr28:26960712-26960880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
126-297
               

               
Cow position:
               
chr28:5273226-5273405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
126-298
               

               
Cow position:
               
chr28:34081670-34081840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
73, 116
               

               
Conread position:
               
126-317
               

               
Cow position:
               
chr28:3137754-3137548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
126-323
               

               
Cow position:
               
chr28:24082471-24082269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
126-324
               

               
Cow position:
               
chr28:5188228-5188431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
126-332
               

               
Cow position:
               
chr28:19038817-19039029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
126-336
               

               
Cow position:
               
chr28:6059270-6059484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
31, 46
               

               
Conread position:
               
126-336
               

               
Cow position:
               
chr28:25129085-25128873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
82, 145
               

               
Conread position:
               
126-347
               

               
Cow position:
               
chr28:23410133-23410350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
147, 63
               

               
Conread position:
               
127-266
               

               
Cow position:
               
chr28:2737327-2737462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
127-266
               

               
Cow position:
               
chr28:21263354-21263213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
127-266
               

               
Cow position:
               
chr28:24238284-24238421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
127-267
               

               
Cow position:
               
chr28:22371475-22371611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
127-267
               

               
Cow position:
               
chr28:24767608-24767459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
127-268
               

               
Cow position:
               
chr28:7523215-7523362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
67, 109
               

               
Conread position:
               
127-277
               

               
Cow position:
               
chr28:16856906-16857062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
127-281
               

               
Cow position:
               
chr28:3759197-3759031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
127-285
               

               
Cow position:
               
chr28:10763088-10762931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
127-287
               

               
Cow position:
               
chr28:9677863-9677704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
75, 25
               

               
Conread position:
               
127-287
               

               
Cow position:
               
chr28:26867954-26868116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
127-295
               

               
Cow position:
               
chr28:20281948-20281785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
78, 21
               

               
Conread position:
               
127-298
               

               
Cow position:
               
chr28:10890542-10890711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
127-298
               

               
Cow position:
               
chr28:13370939-13371123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
127-301
               

               
Cow position:
               
chr28:5674072-5673896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
127-314
               

               
Cow position:
               
chr28:4884053-4884248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
127-317
               

               
Cow position:
               
chr28:4227676-4227481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
48, 148
               

               
Conread position:
               
127-319
               

               
Cow position:
               
chr28:19994746-19994943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
63, 150
               

               
Conread position:
               
127-322
               

               
Cow position:
               
chr28:4876638-4876443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
81, 142
               

               
Conread position:
               
127-325
               

               
Cow position:
               
chr28:26784056-26784244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
127-328
               

               
Cow position:
               
chr28:5805862-5805665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
81, 25
               

               
Conread position:
               
127-329
               

               
Cow position:
               
chr28:19262384-19262594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
127-330
               

               
Cow position:
               
chr28:8396525-8396327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
79, 16
               

               
Conread position:
               
127-330
               

               
Cow position:
               
chr28:11585009-11585210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
84, 63
               

               
Conread position:
               
127-330
               

               
Cow position:
               
chr28:19127972-19128177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
67, 129
               

               
Conread position:
               
127-333
               

               
Cow position:
               
chr28:11426348-11426552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
127-334
               

               
Cow position:
               
chr28:3023716-3023925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
33, 68
               

               
Conread position:
               
127-334
               

               
Cow position:
               
chr28:5232140-5231926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
127-334
               

               
Cow position:
               
chr28:7131891-7132099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
83, 144
               

               
Conread position:
               
127-334
               

               
Cow position:
               
chr28:11816484-11816678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
127-334
               

               
Cow position:
               
chr28:11828759-11828968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
67, 162
               

               
Conread position:
               
127-334
               

               
Cow position:
               
chr28:11987363-11987162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
165, 25
               

               
Conread position:
               
127-334
               

               
Cow position:
               
chr28:12055601-12055400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
165, 25
               

               
Conread position:
               
127-334
               

               
Cow position:
               
chr28:17948917-17949125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
79, 69
               

               
Conread position:
               
127-334
               

               
Cow position:
               
chr28:29850622-29850827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
33, 27
               

               
Conread position:
               
127-336
               

               
Cow position:
               
chr28:20174038-20173822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
67, 116
               

               
Conread position:
               
127-336
               

               
Cow position:
               
chr28:24672468-24672251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
127-344
               

               
Cow position:
               
chr28:23007542-23007752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
127-345
               

               
Cow position:
               
chr28:4016723-4016508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
127-345
               

               
Cow position:
               
chr28:10053132-10053352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
84, 25
               

               
Conread position:
               
127-345
               

               
Cow position:
               
chr28:24646783-24646571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
79, 23
               

               
Conread position:
               
127-345
               

               
Cow position:
               
chr28:30746538-30746753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
106, 43
               

               
Conread position:
               
127-346
               

               
Cow position:
               
chr28:4823801-4823581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
62, 37
               

               
Conread position:
               
127-346
               

               
Cow position:
               
chr28:9636257-9636481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
127-346
               

               
Cow position:
               
chr28:10615750-10615970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
81, 25
               

               
Conread position:
               
127-346
               

               
Cow position:
               
chr28:30293386-30293612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
67, 23
               

               
Conread position:
               
127-347
               

               
Cow position:
               
chr28:616569-616361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
127-347
               

               
Cow position:
               
chr28:3078496-3078706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
127-347
               

               
Cow position:
               
chr28:3746397-3746173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
77, 67
               

               
Conread position:
               
127-347
               

               
Cow position:
               
chr28:4186103-4185882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
77, 194
               

               
Conread position:
               
127-347
               

               
Cow position:
               
chr28:5205451-5205246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
127-347
               

               
Cow position:
               
chr28:6975434-6975217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
127-347
               

               
Cow position:
               
chr28:11348626-11348399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
34, 112
               

               
Conread position:
               
127-347
               

               
Cow position:
               
chr28:17740025-17739801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
67, 171
               

               
Conread position:
               
127-347
               

               
Cow position:
               
chr28:18770287-18770060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
67, 25
               

               
Conread position:
               
127-347
               

               
Cow position:
               
chr28:21008471-21008691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 29
               

               
Conread position:
               
127-347
               

               
Cow position:
               
chr28:28765703-28765928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
65, 25
               

               
Conread position:
               
127-348
               

               
Cow position:
               
chr28:751428-751201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
67, 129
               

               
Conread position:
               
128-266
               

               
Cow position:
               
chr28:4866379-4866517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
128-266
               

               
Cow position:
               
chr28:8515991-8516127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
128-266
               

               
Cow position:
               
chr28:10252716-10252861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
128-271
               

               
Cow position:
               
chr28:9639852-9639701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
128-277
               

               
Cow position:
               
chr28:8655967-8656121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
71, 50
               

               
Conread position:
               
128-282
               

               
Cow position:
               
chr28:6301283-6301121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
128-297
               

               
Cow position:
               
chr28:33032677-33032513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
128-318
               

               
Cow position:
               
chr28:2821460-2821257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
128-322
               

               
Cow position:
               
chr28:7557528-7557734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
128-323
               

               
Cow position:
               
chr28:10888824-10888636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
14, 67
               

               
Conread position:
               
128-324
               

               
Cow position:
               
chr28:5441698-5441899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
45, 139
               

               
Conread position:
               
128-328
               

               
Cow position:
               
chr28:11016603-11016402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
83, 75
               

               
Conread position:
               
128-331
               

               
Cow position:
               
chr28:18797509-18797311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
128-335
               

               
Cow position:
               
chr28:19221938-19222163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
23, 218
               

               
Conread position:
               
128-346
               

               
Cow position:
               
chr28:4282290-4282514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
64, 168
               

               
Conread position:
               
128-347
               

               
Cow position:
               
chr28:22182934-22183172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
128-347
               

               
Cow position:
               
chr28:26372920-26372717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
128-347
               

               
Cow position:
               
chr28:27218524-27218299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
79, 143
               

               
Conread position:
               
128-348
               

               
Cow position:
               
chr28:7267750-7267968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
80, 54
               

               
Conread position:
               
129-281
               

               
Cow position:
               
chr28:29500605-29500441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
129-285
               

               
Cow position:
               
chr28:16570002-16569842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
65, 108
               

               
Conread position:
               
129-287
               

               
Cow position:
               
chr28:11305437-11305598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
129-298
               

               
Cow position:
               
chr28:22085347-22085518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
129-301
               

               
Cow position:
               
chr28:3678557-3678381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
129-324
               

               
Cow position:
               
chr28:6322017-6321815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
54, 119
               

               
Conread position:
               
129-330
               

               
Cow position:
               
chr28:2131744-2131932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
107, 23
               

               
Conread position:
               
129-334
               

               
Cow position:
               
chr28:5204383-5204183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
129-343
               

               
Cow position:
               
chr28:26826420-26826205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
65, 171
               

               
Conread position:
               
129-345
               

               
Cow position:
               
chr28:11527061-11527281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
61, 144
               

               
Conread position:
               
129-346
               

               
Cow position:
               
chr28:12672263-12672489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
130-347
               

               
Cow position:
               
chr28:7350847-7350629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
78, 24
               

               
Conread position:
               
131-312
               

               
Cow position:
               
chr28:26530671-26530856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
131-336
               

               
Cow position:
               
chr28:24343549-24343357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
131-348
               

               
Cow position:
               
chr28:4006977-4006760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
86, 162
               

               
Conread position:
               
133-333
               

               
Cow position:
               
chr28:2279408-2279600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
69, 61
               

               
Conread position:
               
133-346
               

               
Cow position:
               
chr28:12933542-12933758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
73, 19
               

               
Conread position:
               
133-346
               

               
Cow position:
               
chr28:14998258-14998043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
82, 53
               

               
Conread position:
               
133-348
               

               
Cow position:
               
chr28:18139277-18139482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
134-264
               

               
Cow position:
               
chr28:17060254-17060124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
134-330
               

               
Cow position:
               
chr28:9684144-9684342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
134-346
               

               
Cow position:
               
chr28:4046037-4045825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
52, 149
               

               
Conread position:
               
134-346
               

               
Cow position:
               
chr28:20963354-20963553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
134-348
               

               
Cow position:
               
chr28:5818031-5817814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
135-297
               

               
Cow position:
               
chr28:13160351-13160521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
135-322
               

               
Cow position:
               
chr28:11451313-11451492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
135-326
               

               
Cow position:
               
chr28:18608173-18608372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
135-328
               

               
Cow position:
               
chr28:16879760-16879567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
135-330
               

               
Cow position:
               
chr28:26531089-26531285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
59, 16
               

               
Conread position:
               
135-345
               

               
Cow position:
               
chr28:3914897-3914693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
170, 55
               

               
Conread position:
               
135-347
               

               
Cow position:
               
chr28:13866015-13865821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
135-348
               

               
Cow position:
               
chr28:16346346-16346557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
59, 14
               

               
Conread position:
               
135-348
               

               
Cow position:
               
chr28:17071532-17071311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
135-348
               

               
Cow position:
               
chr28:21363932-21363721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
71, 17
               

               
Conread position:
               
136-281
               

               
Cow position:
               
chr28:24726251-24726396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
72, 16
               

               
Conread position:
               
136-344
               

               
Cow position:
               
chr28:26743822-26743604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
137-267
               

               
Cow position:
               
chr28:4100574-4100704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
71, 23
               

               
Conread position:
               
137-347
               

               
Cow position:
               
chr28:20397176-20397395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
138-345
               

               
Cow position:
               
chr28:18369824-18370028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
70, 138
               

               
Conread position:
               
139-346
               

               
Cow position:
               
chr28:555684-555480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
141-329
               

               
Cow position:
               
chr28:17601707-17601882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
143-334
               

               
Cow position:
               
chr28:13048097-13048295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
49, 172
               

               
Conread position:
               
143-347
               

               
Cow position:
               
chr28:3741053-3740851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
145-336
               

               
Cow position:
               
chr28:9384109-9384301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
99, 88
               

               
Conread position:
               
146-336
               

               
Cow position:
               
chr28:2899179-2898975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
148-348
               

               
Cow position:
               
chr28:4138488-4138697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
150-347
               

               
Cow position:
               
chr28:2819950-2819750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
152-324
               

               
Cow position:
               
chr28:27429201-27429029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
153-347
               

               
Cow position:
               
chr28:11559459-11559658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
35, 22
               

               
Conread position:
               
154-310
               

               
Cow position:
               
chr28:22630177-22630024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
157-339
               

               
Cow position:
               
chr28:26103868-26103687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
51, 70
               

               
Conread position:
               
158-342
               

               
Cow position:
               
chr28:19294964-19295149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
43, 137
               

               
Conread position:
               
158-347
               

               
Cow position:
               
chr28:3408053-3408243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
52, 99
               

               
Conread position:
               
160-348
               

               
Cow position:
               
chr28:1538335-1538140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
28, 92
               

               
Conread position:
               
178-336
               

               
Cow position:
               
chr28:8149488-8149646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
93, 88
               

               
Conread position:
               
181-331
               

               
Cow position:
               
chr28:4841249-4841402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
88, 102
               

               
Conread position:
               
185-336
               

               
Cow position:
               
chr28:29434289-29434442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
186-347
               

               
Cow position:
               
chr28:19025867-19026030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
187-297
               

               
Cow position:
               
chr28:31876686-31876799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
196-318
               

               
Cow position:
               
chr28:12385166-12385289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
196-336
               

               
Cow position:
               
chr28:25677215-25677356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
196-345
               

               
Cow position:
               
chr28:2772836-2772690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
196-345
               

               
Cow position:
               
chr28:32174755-32174606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
96, 128
               

               
Conread position:
               
196-346
               

               
Cow position:
               
chr28:10172291-10172439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
196-346
               

               
Cow position:
               
chr28:27161201-27161350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
196-347
               

               
Cow position:
               
chr28:4765803-4765649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
196-347
               

               
Cow position:
               
chr28:34247905-34248054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
196-348
               

               
Cow position:
               
chr28:7388644-7388793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
7, 84
               

               
Conread position:
               
199-328
               

               
Cow position:
               
chr28:25675385-25675511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
200-347
               

               
Cow position:
               
chr28:7805300-7805446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
200-347
               

               
Cow position:
               
chr28:20313401-20313253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
11, 143
               

               
Conread position:
               
203-343
               

               
Cow position:
               
chr28:14512653-14512511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
203-345
               

               
Cow position:
               
chr28:8147744-8147886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
7, 58
               

               
Conread position:
               
205-346
               

               
Cow position:
               
chr28:21355348-21355208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
205-348
               

               
Cow position:
               
chr28:21598133-21598278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
207-346
               

               
Cow position:
               
chr28:26922253-26922392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
219-345
               

               
Cow position:
               
chr28:23676241-23676115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.