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Cow genome map

           
Conread name:
           
Ss1.1-rspc008_f14.5
        

               
Conread position:
               
72-264
               

               
Cow position:
               
chr29:10994759-10994563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
135, 63
               

               
Conread position:
               
79-308
               

               
Cow position:
               
chr29:35189846-35189613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
115, 17
               

               
Conread position:
               
80-324
               

               
Cow position:
               
chr29:17110192-17109951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
27, 8
               

               
Conread position:
               
84-334
               

               
Cow position:
               
chr29:30549018-30548757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
26, 36
               

               
Conread position:
               
85-297
               

               
Cow position:
               
chr29:26602438-26602217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
88-330
               

               
Cow position:
               
chr29:32894487-32894248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
100, 20
               

               
Conread position:
               
90-295
               

               
Cow position:
               
chr29:25793370-25793166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
104, 31
               

               
Conread position:
               
92-330
               

               
Cow position:
               
chr29:16200248-16200493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
8, 27
               

               
Conread position:
               
95-295
               

               
Cow position:
               
chr29:26259703-26259504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
34, 106
               

               
Conread position:
               
96-310
               

               
Cow position:
               
chr29:19187249-19187031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
98, 7
               

               
Conread position:
               
96-328
               

               
Cow position:
               
chr29:36781083-36781317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
96-333
               

               
Cow position:
               
chr29:22613646-22613412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
110, 61
               

               
Conread position:
               
98-336
               

               
Cow position:
               
chr29:3685297-3685540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
22, 32
               

               
Conread position:
               
98-346
               

               
Cow position:
               
chr29:17154985-17154748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
21, 40
               

               
Conread position:
               
101-289
               

               
Cow position:
               
chr29:10191827-10192013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
170, 19
               

               
Conread position:
               
102-347
               

               
Cow position:
               
chr29:29588707-29588958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
82, 32
               

               
Conread position:
               
102-347
               

               
Cow position:
               
chr29:30366836-30367087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
100, 65
               

               
Conread position:
               
102-347
               

               
Cow position:
               
chr29:44991207-44991454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
49, 16
               

               
Conread position:
               
103-346
               

               
Cow position:
               
chr29:32656653-32656402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
91, 30
               

               
Conread position:
               
104-285
               

               
Cow position:
               
chr29:19742047-19741871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
107, 12
               

               
Conread position:
               
105-315
               

               
Cow position:
               
chr29:19420403-19420613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
9, 48
               

               
Conread position:
               
106-317
               

               
Cow position:
               
chr29:14375665-14375883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
85, 22
               

               
Conread position:
               
107-298
               

               
Cow position:
               
chr29:22576965-22577162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
86, 27
               

               
Conread position:
               
107-336
               

               
Cow position:
               
chr29:28979302-28979519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
108-348
               

               
Cow position:
               
chr29:25814622-25814869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
99, 179
               

               
Conread position:
               
109-333
               

               
Cow position:
               
chr29:10058333-10058553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
99, 16
               

               
Conread position:
               
109-336
               

               
Cow position:
               
chr29:35084012-35084243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
97, 19
               

               
Conread position:
               
109-346
               

               
Cow position:
               
chr29:16272955-16272711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
79, 24
               

               
Conread position:
               
109-346
               

               
Cow position:
               
chr29:31982033-31981800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
109-347
               

               
Cow position:
               
chr29:25874258-25874503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
85, 24
               

               
Conread position:
               
109-347
               

               
Cow position:
               
chr29:34744419-34744653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
82, 45
               

               
Conread position:
               
110-267
               

               
Cow position:
               
chr29:18605455-18605612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
110-324
               

               
Cow position:
               
chr29:19363919-19363702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
98, 167
               

               
Conread position:
               
110-334
               

               
Cow position:
               
chr29:32733513-32733280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
110-335
               

               
Cow position:
               
chr29:4624788-4625017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
84, 18
               

               
Conread position:
               
110-347
               

               
Cow position:
               
chr29:2744058-2744299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
14, 26
               

               
Conread position:
               
110-347
               

               
Cow position:
               
chr29:4492642-4492406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
97, 18
               

               
Conread position:
               
111-301
               

               
Cow position:
               
chr29:14746987-14746794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
88, 17
               

               
Conread position:
               
111-346
               

               
Cow position:
               
chr29:23874670-23874429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
83, 7
               

               
Conread position:
               
111-347
               

               
Cow position:
               
chr29:1933361-1933603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
84, 17
               

               
Conread position:
               
112-267
               

               
Cow position:
               
chr29:24119290-24119452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
79, 16
               

               
Conread position:
               
112-301
               

               
Cow position:
               
chr29:26208168-26207989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
112-310
               

               
Cow position:
               
chr29:26211261-26211057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
82, 16
               

               
Conread position:
               
112-346
               

               
Cow position:
               
chr29:42630325-42630090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
91, 16
               

               
Conread position:
               
113-298
               

               
Cow position:
               
chr29:40763488-40763677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
113-328
               

               
Cow position:
               
chr29:7624374-7624166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
11, 40
               

               
Conread position:
               
113-338
               

               
Cow position:
               
chr29:35458562-35458794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
78, 21
               

               
Conread position:
               
114-203
               

               
Cow position:
               
chr29:17668836-17668747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
90
               

               
Alignm identity:
               
77
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
117-330
               

               
Cow position:
               
chr29:35677338-35677558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
69, 18
               

               
Conread position:
               
117-345
               

               
Cow position:
               
chr29:22068537-22068770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
90, 114
               

               
Conread position:
               
118-281
               

               
Cow position:
               
chr29:2219590-2219421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
118-308
               

               
Cow position:
               
chr29:21666289-21666094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
118-316
               

               
Cow position:
               
chr29:31221945-31221750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
34, 57
               

               
Conread position:
               
118-324
               

               
Cow position:
               
chr29:18449935-18450145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
87, 195
               

               
Conread position:
               
118-328
               

               
Cow position:
               
chr29:28420960-28420743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
76, 175
               

               
Conread position:
               
118-334
               

               
Cow position:
               
chr29:16290925-16290707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
76, 10
               

               
Conread position:
               
118-334
               

               
Cow position:
               
chr29:38754736-38754958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
80, 10
               

               
Conread position:
               
118-335
               

               
Cow position:
               
chr29:29475051-29475276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
76, 16
               

               
Conread position:
               
118-345
               

               
Cow position:
               
chr29:3826168-3825942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
87, 10
               

               
Conread position:
               
118-345
               

               
Cow position:
               
chr29:21645519-21645289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
76, 10
               

               
Conread position:
               
118-345
               

               
Cow position:
               
chr29:29057383-29057149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
11, 181
               

               
Conread position:
               
118-346
               

               
Cow position:
               
chr29:25092306-25092083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
89, 10
               

               
Conread position:
               
118-346
               

               
Cow position:
               
chr29:26779080-26778852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
11, 164
               

               
Conread position:
               
118-346
               

               
Cow position:
               
chr29:27911794-27911561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
76, 10
               

               
Conread position:
               
118-347
               

               
Cow position:
               
chr29:4070823-4070596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
86, 173
               

               
Conread position:
               
118-347
               

               
Cow position:
               
chr29:41531053-41530819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
76, 10
               

               
Conread position:
               
118-348
               

               
Cow position:
               
chr29:3549807-3549570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
81, 10
               

               
Conread position:
               
118-348
               

               
Cow position:
               
chr29:16657894-16657661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
96, 134
               

               
Conread position:
               
119-324
               

               
Cow position:
               
chr29:2056261-2056052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
35, 9
               

               
Conread position:
               
119-336
               

               
Cow position:
               
chr29:44378206-44378435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
72, 6
               

               
Conread position:
               
120-260
               

               
Cow position:
               
chr29:10839140-10838996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
120-329
               

               
Cow position:
               
chr29:28196819-28197020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
148, 34
               

               
Conread position:
               
120-332
               

               
Cow position:
               
chr29:19176714-19176930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
104, 81
               

               
Conread position:
               
120-338
               

               
Cow position:
               
chr29:28994057-28993835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
91, 70
               

               
Conread position:
               
120-346
               

               
Cow position:
               
chr29:35292287-35292061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
87, 74
               

               
Conread position:
               
121-205
               

               
Cow position:
               
chr29:5147835-5147751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
85
               

               
Alignm identity:
               
74
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
121-260
               

               
Cow position:
               
chr29:44985461-44985327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
121-266
               

               
Cow position:
               
chr29:25432654-25432502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
59, 45
               

               
Conread position:
               
121-266
               

               
Cow position:
               
chr29:40112579-40112431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
121-271
               

               
Cow position:
               
chr29:29296588-29296438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
121-278
               

               
Cow position:
               
chr29:31593957-31594107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
121-281
               

               
Cow position:
               
chr29:37293227-37293070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
121-284
               

               
Cow position:
               
chr29:23678901-23678740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
99, 73
               

               
Conread position:
               
121-288
               

               
Cow position:
               
chr29:17282261-17282095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
83, 34
               

               
Conread position:
               
121-289
               

               
Cow position:
               
chr29:11081195-11081370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
73, 5
               

               
Conread position:
               
121-290
               

               
Cow position:
               
chr29:22652519-22652348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
121-296
               

               
Cow position:
               
chr29:10203969-10203791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
121-308
               

               
Cow position:
               
chr29:2644121-2644304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
121-310
               

               
Cow position:
               
chr29:10653522-10653337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
121-314
               

               
Cow position:
               
chr29:43088506-43088312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
63, 161
               

               
Conread position:
               
121-316
               

               
Cow position:
               
chr29:14577057-14576858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
121-321
               

               
Cow position:
               
chr29:4023195-4022998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
72, 10
               

               
Conread position:
               
121-321
               

               
Cow position:
               
chr29:10318787-10318592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
7, 72
               

               
Conread position:
               
121-322
               

               
Cow position:
               
chr29:17236622-17236433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
121-324
               

               
Cow position:
               
chr29:22729765-22729559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
86, 177
               

               
Conread position:
               
121-329
               

               
Cow position:
               
chr29:26540340-26540554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
121-329
               

               
Cow position:
               
chr29:29923376-29923587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
90, 177
               

               
Conread position:
               
121-330
               

               
Cow position:
               
chr29:30827607-30827391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
73, 7
               

               
Conread position:
               
121-330
               

               
Cow position:
               
chr29:37437934-37438150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
66, 7
               

               
Conread position:
               
121-331
               

               
Cow position:
               
chr29:34359624-34359836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
16, 189
               

               
Conread position:
               
121-334
               

               
Cow position:
               
chr29:19762463-19762252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
73, 35
               

               
Conread position:
               
121-334
               

               
Cow position:
               
chr29:25737220-25737433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
66, 13
               

               
Conread position:
               
121-334
               

               
Cow position:
               
chr29:36952112-36952315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
121-336
               

               
Cow position:
               
chr29:24624441-24624229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
85, 30
               

               
Conread position:
               
121-336
               

               
Cow position:
               
chr29:40583985-40583772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
57, 31
               

               
Conread position:
               
121-342
               

               
Cow position:
               
chr29:16279177-16278961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
82, 109
               

               
Conread position:
               
121-345
               

               
Cow position:
               
chr29:35259181-35258955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
86, 34
               

               
Conread position:
               
121-346
               

               
Cow position:
               
chr29:6337849-6337632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
133, 7
               

               
Conread position:
               
121-346
               

               
Cow position:
               
chr29:12025279-12025498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
67, 30
               

               
Conread position:
               
121-346
               

               
Cow position:
               
chr29:19428850-19428628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
85, 16
               

               
Conread position:
               
121-347
               

               
Cow position:
               
chr29:4085496-4085282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
121-347
               

               
Cow position:
               
chr29:11434312-11434087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
121-347
               

               
Cow position:
               
chr29:12625798-12626008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
121-347
               

               
Cow position:
               
chr29:17297338-17297104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
121-347
               

               
Cow position:
               
chr29:20167623-20167391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
71, 39
               

               
Conread position:
               
121-347
               

               
Cow position:
               
chr29:28775266-28775491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
83, 18
               

               
Conread position:
               
121-347
               

               
Cow position:
               
chr29:39038069-39038300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
87, 217
               

               
Conread position:
               
121-347
               

               
Cow position:
               
chr29:45005433-45005658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
79, 185
               

               
Conread position:
               
121-348
               

               
Cow position:
               
chr29:1022494-1022263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
62, 100
               

               
Conread position:
               
121-348
               

               
Cow position:
               
chr29:7310863-7310643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
223, 77
               

               
Conread position:
               
121-348
               

               
Cow position:
               
chr29:23825862-23825637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
144, 73
               

               
Conread position:
               
122-254
               

               
Cow position:
               
chr29:36183707-36183578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
122-261
               

               
Cow position:
               
chr29:25669282-25669148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
122-264
               

               
Cow position:
               
chr29:41351079-41351222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
68, 32
               

               
Conread position:
               
122-265
               

               
Cow position:
               
chr29:7040669-7040822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
122-265
               

               
Cow position:
               
chr29:22018987-22019137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
122-266
               

               
Cow position:
               
chr29:24605095-24604945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
122-266
               

               
Cow position:
               
chr29:36546583-36546733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
122-298
               

               
Cow position:
               
chr29:3538486-3538659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
122-329
               

               
Cow position:
               
chr29:36531065-36530853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
122-330
               

               
Cow position:
               
chr29:5063342-5063130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
122-332
               

               
Cow position:
               
chr29:35442282-35442479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
122-333
               

               
Cow position:
               
chr29:31674829-31674615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
72, 6
               

               
Conread position:
               
122-335
               

               
Cow position:
               
chr29:26275800-26275590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
73, 149
               

               
Conread position:
               
122-336
               

               
Cow position:
               
chr29:1325645-1325422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
53, 180
               

               
Conread position:
               
122-345
               

               
Cow position:
               
chr29:19250542-19250316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
112, 92
               

               
Conread position:
               
122-345
               

               
Cow position:
               
chr29:21196453-21196681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
122-347
               

               
Cow position:
               
chr29:22162066-22162281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
122-347
               

               
Cow position:
               
chr29:22720448-22720683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
122-347
               

               
Cow position:
               
chr29:22777982-22778207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
89, 30
               

               
Conread position:
               
122-347
               

               
Cow position:
               
chr29:24187864-24188097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
122-347
               

               
Cow position:
               
chr29:24293069-24292837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
80, 50
               

               
Conread position:
               
122-348
               

               
Cow position:
               
chr29:16309920-16309709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
222, 35
               

               
Conread position:
               
123-287
               

               
Cow position:
               
chr29:6756182-6756016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
123-320
               

               
Cow position:
               
chr29:2135332-2135522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
88, 14
               

               
Conread position:
               
123-332
               

               
Cow position:
               
chr29:7290968-7290759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
14, 30
               

               
Conread position:
               
123-338
               

               
Cow position:
               
chr29:24952885-24952665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
82, 136
               

               
Conread position:
               
124-336
               

               
Cow position:
               
chr29:1011396-1011601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
76, 104
               

               
Conread position:
               
125-265
               

               
Cow position:
               
chr29:5064960-5064825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
125-277
               

               
Cow position:
               
chr29:24660873-24660723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
74, 65
               

               
Conread position:
               
125-282
               

               
Cow position:
               
chr29:33143161-33143321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
83, 6
               

               
Conread position:
               
125-314
               

               
Cow position:
               
chr29:40350885-40351074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
80, 107
               

               
Conread position:
               
125-330
               

               
Cow position:
               
chr29:34358783-34358993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
60, 16
               

               
Conread position:
               
125-337
               

               
Cow position:
               
chr29:38979884-38980096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
81, 62
               

               
Conread position:
               
125-346
               

               
Cow position:
               
chr29:13028646-13028413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
69, 180
               

               
Conread position:
               
125-348
               

               
Cow position:
               
chr29:5769990-5769760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
15, 118
               

               
Conread position:
               
126-282
               

               
Cow position:
               
chr29:13064045-13063892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
126-287
               

               
Cow position:
               
chr29:17663563-17663733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
61, 44
               

               
Conread position:
               
126-306
               

               
Cow position:
               
chr29:22991487-22991304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
17, 148
               

               
Conread position:
               
126-312
               

               
Cow position:
               
chr29:41422714-41422904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
70, 160
               

               
Conread position:
               
126-316
               

               
Cow position:
               
chr29:8634847-8634653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
62, 50
               

               
Conread position:
               
126-320
               

               
Cow position:
               
chr29:15796679-15796481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
68, 28
               

               
Conread position:
               
126-334
               

               
Cow position:
               
chr29:29324226-29324439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
61, 9
               

               
Conread position:
               
126-336
               

               
Cow position:
               
chr29:26017305-26017525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
126-336
               

               
Cow position:
               
chr29:31934571-31934358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
80, 65
               

               
Conread position:
               
126-345
               

               
Cow position:
               
chr29:5789210-5788999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
85, 57
               

               
Conread position:
               
126-346
               

               
Cow position:
               
chr29:27819400-27819188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
126-346
               

               
Cow position:
               
chr29:31929181-31928958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
73, 58
               

               
Conread position:
               
127-238
               

               
Cow position:
               
chr29:31835462-31835349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
127-255
               

               
Cow position:
               
chr29:33550979-33551105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
84, 25
               

               
Conread position:
               
127-267
               

               
Cow position:
               
chr29:8841255-8841397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
127-285
               

               
Cow position:
               
chr29:30294677-30294843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
127-297
               

               
Cow position:
               
chr29:8798818-8798997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
60, 7
               

               
Conread position:
               
127-298
               

               
Cow position:
               
chr29:23142138-23142318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
127-301
               

               
Cow position:
               
chr29:4441011-4441191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
67, 118
               

               
Conread position:
               
127-301
               

               
Cow position:
               
chr29:9622514-9622678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
127-301
               

               
Cow position:
               
chr29:26539425-26539249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
127-302
               

               
Cow position:
               
chr29:936397-936220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
80, 67
               

               
Conread position:
               
127-307
               

               
Cow position:
               
chr29:11489401-11489572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
127-308
               

               
Cow position:
               
chr29:23819190-23819383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
127-309
               

               
Cow position:
               
chr29:32215898-32215713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
67, 50
               

               
Conread position:
               
127-310
               

               
Cow position:
               
chr29:684983-685168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
108, 64
               

               
Conread position:
               
127-319
               

               
Cow position:
               
chr29:12890870-12890681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
79, 23
               

               
Conread position:
               
127-320
               

               
Cow position:
               
chr29:15798145-15797947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
67, 27
               

               
Conread position:
               
127-324
               

               
Cow position:
               
chr29:42363825-42364026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
75, 99
               

               
Conread position:
               
127-325
               

               
Cow position:
               
chr29:7954770-7954977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
61, 96
               

               
Conread position:
               
127-330
               

               
Cow position:
               
chr29:23155429-23155213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
58, 192
               

               
Conread position:
               
127-333
               

               
Cow position:
               
chr29:9378829-9378619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
127-334
               

               
Cow position:
               
chr29:19949499-19949290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
81, 155
               

               
Conread position:
               
127-335
               

               
Cow position:
               
chr29:5046847-5046633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
56, 25
               

               
Conread position:
               
127-335
               

               
Cow position:
               
chr29:23698164-23697957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
154, 25
               

               
Conread position:
               
127-335
               

               
Cow position:
               
chr29:28066674-28066471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
58, 25
               

               
Conread position:
               
127-335
               

               
Cow position:
               
chr29:31651596-31651391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
79, 90
               

               
Conread position:
               
127-336
               

               
Cow position:
               
chr29:8163633-8163848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
74, 188
               

               
Conread position:
               
127-336
               

               
Cow position:
               
chr29:32655900-32656113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
127-336
               

               
Cow position:
               
chr29:33321543-33321330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
64, 170
               

               
Conread position:
               
127-340
               

               
Cow position:
               
chr29:34832199-34832410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
57, 68
               

               
Conread position:
               
127-346
               

               
Cow position:
               
chr29:3293137-3292918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
77, 99
               

               
Conread position:
               
127-346
               

               
Cow position:
               
chr29:4121050-4120823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
127-346
               

               
Cow position:
               
chr29:5520290-5520515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
67, 218
               

               
Conread position:
               
127-346
               

               
Cow position:
               
chr29:17222610-17222382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
67, 48
               

               
Conread position:
               
127-346
               

               
Cow position:
               
chr29:40994685-40994921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
61, 170
               

               
Conread position:
               
127-347
               

               
Cow position:
               
chr29:396596-396381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
81, 67
               

               
Conread position:
               
127-347
               

               
Cow position:
               
chr29:5408948-5409173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
73, 102
               

               
Conread position:
               
127-347
               

               
Cow position:
               
chr29:5893040-5892813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
61, 25
               

               
Conread position:
               
127-347
               

               
Cow position:
               
chr29:23812854-23813072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
86, 25
               

               
Conread position:
               
127-347
               

               
Cow position:
               
chr29:34745467-34745689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
61, 20
               

               
Conread position:
               
127-348
               

               
Cow position:
               
chr29:9709887-9709661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
127-348
               

               
Cow position:
               
chr29:10153618-10153828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
127-348
               

               
Cow position:
               
chr29:28195339-28195548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
127-348
               

               
Cow position:
               
chr29:29308388-29308605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
195, 68
               

               
Conread position:
               
128-266
               

               
Cow position:
               
chr29:4484290-4484145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
128-266
               

               
Cow position:
               
chr29:22776269-22776128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
62, 75
               

               
Conread position:
               
128-285
               

               
Cow position:
               
chr29:38732348-38732183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
128-289
               

               
Cow position:
               
chr29:1959762-1959920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
128-317
               

               
Cow position:
               
chr29:629730-629536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
78, 32
               

               
Conread position:
               
128-334
               

               
Cow position:
               
chr29:12680351-12680137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
66, 161
               

               
Conread position:
               
128-336
               

               
Cow position:
               
chr29:11916014-11915806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
34, 154
               

               
Conread position:
               
128-345
               

               
Cow position:
               
chr29:7955795-7956020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
72, 129
               

               
Conread position:
               
128-345
               

               
Cow position:
               
chr29:30441132-30440904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
66, 117
               

               
Conread position:
               
128-346
               

               
Cow position:
               
chr29:36357321-36357098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
69, 148
               

               
Conread position:
               
128-346
               

               
Cow position:
               
chr29:37618501-37618273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
66, 173
               

               
Conread position:
               
128-346
               

               
Cow position:
               
chr29:40117758-40117541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
128-346
               

               
Cow position:
               
chr29:43183125-43183344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
57, 41
               

               
Conread position:
               
128-347
               

               
Cow position:
               
chr29:27524641-27524867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
66, 14
               

               
Conread position:
               
128-347
               

               
Cow position:
               
chr29:38858019-38858245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
128-348
               

               
Cow position:
               
chr29:34297378-34297601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
60, 82
               

               
Conread position:
               
129-267
               

               
Cow position:
               
chr29:23539567-23539429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
129-289
               

               
Cow position:
               
chr29:11894892-11894724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
55, 117
               

               
Conread position:
               
129-330
               

               
Cow position:
               
chr29:15947361-15947152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
129-334
               

               
Cow position:
               
chr29:29769162-29769370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
65, 154
               

               
Conread position:
               
129-334
               

               
Cow position:
               
chr29:35501473-35501673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
129-342
               

               
Cow position:
               
chr29:22895900-22895700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
129-347
               

               
Cow position:
               
chr29:22028769-22028986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
82, 70
               

               
Conread position:
               
130-317
               

               
Cow position:
               
chr29:1946724-1946910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
74, 18
               

               
Conread position:
               
130-330
               

               
Cow position:
               
chr29:41112699-41112894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
131-312
               

               
Cow position:
               
chr29:17436937-17436754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
63, 37
               

               
Conread position:
               
131-332
               

               
Cow position:
               
chr29:4367894-4367709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
131-345
               

               
Cow position:
               
chr29:21443151-21443368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
63, 21
               

               
Conread position:
               
131-347
               

               
Cow position:
               
chr29:20770534-20770315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
49, 157
               

               
Conread position:
               
132-316
               

               
Cow position:
               
chr29:31211799-31211616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
20, 43
               

               
Conread position:
               
132-336
               

               
Cow position:
               
chr29:1395761-1395577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
132-336
               

               
Cow position:
               
chr29:7285642-7285442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
49, 32
               

               
Conread position:
               
133-316
               

               
Cow position:
               
chr29:18878294-18878482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
61, 19
               

               
Conread position:
               
133-324
               

               
Cow position:
               
chr29:4053156-4053349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
133-336
               

               
Cow position:
               
chr29:4423262-4423460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
134-322
               

               
Cow position:
               
chr29:23913210-23913400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
134-330
               

               
Cow position:
               
chr29:39111137-39111326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
134-346
               

               
Cow position:
               
chr29:23389379-23389584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
44, 18
               

               
Conread position:
               
134-347
               

               
Cow position:
               
chr29:17804717-17804503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
70, 128
               

               
Conread position:
               
134-347
               

               
Cow position:
               
chr29:40791484-40791278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
135-265
               

               
Cow position:
               
chr29:7143485-7143345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
135-288
               

               
Cow position:
               
chr29:16536175-16536024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
19, 63
               

               
Conread position:
               
135-330
               

               
Cow position:
               
chr29:32197880-32197682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
135-345
               

               
Cow position:
               
chr29:16609936-16609718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
136-347
               

               
Cow position:
               
chr29:4520517-4520307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
58, 85
               

               
Conread position:
               
137-310
               

               
Cow position:
               
chr29:24365713-24365891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
50, 119
               

               
Conread position:
               
137-346
               

               
Cow position:
               
chr29:36632676-36632892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
137-346
               

               
Cow position:
               
chr29:43544421-43544633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
69, 174
               

               
Conread position:
               
138-266
               

               
Cow position:
               
chr29:415187-415065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
139-347
               

               
Cow position:
               
chr29:109863-109663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
13, 88
               

               
Conread position:
               
139-348
               

               
Cow position:
               
chr29:44684279-44684071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
72, 136
               

               
Conread position:
               
140-330
               

               
Cow position:
               
chr29:22723777-22723586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
64, 12
               

               
Conread position:
               
140-336
               

               
Cow position:
               
chr29:44988623-44988810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
108, 54
               

               
Conread position:
               
140-347
               

               
Cow position:
               
chr29:23825031-23825241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
66, 205
               

               
Conread position:
               
141-336
               

               
Cow position:
               
chr29:38582150-38581952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
58, 159
               

               
Conread position:
               
143-288
               

               
Cow position:
               
chr29:28257320-28257168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
144-310
               

               
Cow position:
               
chr29:11116486-11116656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
145-324
               

               
Cow position:
               
chr29:16672660-16672482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
56, 46
               

               
Conread position:
               
145-336
               

               
Cow position:
               
chr29:40633829-40633622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
146-336
               

               
Cow position:
               
chr29:6844462-6844653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
37, 166
               

               
Conread position:
               
152-334
               

               
Cow position:
               
chr29:29973844-29974034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
42, 83
               

               
Conread position:
               
153-332
               

               
Cow position:
               
chr29:24051210-24051398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
51, 110
               

               
Conread position:
               
154-347
               

               
Cow position:
               
chr29:13639197-13639398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
44, 6
               

               
Conread position:
               
155-335
               

               
Cow position:
               
chr29:45589434-45589609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
182-347
               

               
Cow position:
               
chr29:26416484-26416323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
121, 96
               

               
Conread position:
               
186-336
               

               
Cow position:
               
chr29:40298891-40299041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
192-321
               

               
Cow position:
               
chr29:19244337-19244465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
195-336
               

               
Cow position:
               
chr29:1220011-1220152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
195-345
               

               
Cow position:
               
chr29:1229727-1229579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
195-345
               

               
Cow position:
               
chr29:5210613-5210462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
11, 82
               

               
Conread position:
               
195-346
               

               
Cow position:
               
chr29:2262873-2263023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
9, 85
               

               
Conread position:
               
195-346
               

               
Cow position:
               
chr29:27873721-27873573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
196-334
               

               
Cow position:
               
chr29:39567801-39567667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
196-348
               

               
Cow position:
               
chr29:6286042-6286194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
197-342
               

               
Cow position:
               
chr29:11053740-11053886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
18, 92
               

               
Conread position:
               
197-348
               

               
Cow position:
               
chr29:22936389-22936239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
46, 96
               

               
Conread position:
               
201-337
               

               
Cow position:
               
chr29:13127006-13127144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
205-339
               

               
Cow position:
               
chr29:7103668-7103534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
205-339
               

               
Cow position:
               
chr29:37046591-37046725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
205-345
               

               
Cow position:
               
chr29:11042538-11042402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
205-346
               

               
Cow position:
               
chr29:8926351-8926491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
205-347
               

               
Cow position:
               
chr29:13867100-13867242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
209-347
               

               
Cow position:
               
chr29:30918655-30918517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
65, 76
               

               
Conread position:
               
217-348
               

               
Cow position:
               
chr29:5186395-5186525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
218-337
               

               
Cow position:
               
chr29:42886640-42886521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
219-342
               

               
Cow position:
               
chr29:19558923-19559046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
225-345
               

               
Cow position:
               
chr29:15940540-15940660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.