Cow genome map
| Conread name: | Ss1.1-rspc011_k9.5 |
| Conread position: | 69-736 |
| Cow position: | chr12:1402040-1402718 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 74-813 |
| Cow position: | chr12:15951697-15950956 (view UCSC Genome Browser custom track) |
| Alignm length: | 762 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 65 |
| Conread position: | 78-730 |
| Cow position: | chr12:22332176-22332846 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 53 |
| Conread position: | 78-736 |
| Cow position: | chr12:21255113-21254428 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 65 |
| Conread position: | 79-430 |
| Cow position: | chr12:21197369-21197747 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 79-736 |
| Cow position: | chr12:6407105-6406423 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 131 |
| Conread position: | 88-736 |
| Cow position: | chr12:21901520-21902167 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 62 |
| Conread position: | 91-713 |
| Cow position: | chr12:1137145-1137778 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 413 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 61, 34 |
| Conread position: | 91-736 |
| Cow position: | chr12:8310754-8311409 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 58 |
| Conread position: | 99-736 |
| Cow position: | chr12:2376-3028 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 51 |
| Conread position: | 108-490 |
| Cow position: | chr12:48404637-48405026 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 268 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 117, 42 |
| Conread position: | 113-821 |
| Cow position: | chr12:21499713-21500422 (view UCSC Genome Browser custom track) |
| Alignm length: | 734 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 104 |
| Conread position: | 148-736 |
| Cow position: | chr12:252437-251830 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 252 |
| Conread position: | 150-677 |
| Cow position: | chr12:26141435-26141981 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 56 |
| Conread position: | 151-724 |
| Cow position: | chr12:21941405-21941981 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 312 |
| Conread position: | 151-736 |
| Cow position: | chr12:11097867-11098470 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 561 |
| Conread position: | 151-736 |
| Cow position: | chr12:22206119-22205520 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 441 |
| Conread position: | 151-736 |
| Cow position: | chr12:25101438-25100833 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 41 |
| Conread position: | 151-736 |
| Cow position: | chr12:27933320-27932717 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 151-736 |
| Cow position: | chr12:42860189-42859599 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 243 |
| Conread position: | 152-738 |
| Cow position: | chr12:20998497-20997903 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 264 |
| Conread position: | 154-736 |
| Cow position: | chr12:2282177-2282774 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 23 |
| Conread position: | 154-736 |
| Cow position: | chr12:21426332-21426922 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 89 |
| Conread position: | 157-474 |
| Cow position: | chr12:22026390-22026718 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 157-678 |
| Cow position: | chr12:17128681-17128154 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 328 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 9, 214 |
| Conread position: | 157-736 |
| Cow position: | chr12:8678487-8677893 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 211 |
| Conread position: | 157-736 |
| Cow position: | chr12:28766384-28765791 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 236 |
| Conread position: | 158-739 |
| Cow position: | chr12:14662977-14662402 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 182 |
| Conread position: | 164-682 |
| Cow position: | chr12:21207336-21207868 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 376 |
| Conread position: | 164-735 |
| Cow position: | chr12:43031737-43031158 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 79 |
| Conread position: | 164-736 |
| Cow position: | chr12:3360552-3361132 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 308 |
| Conread position: | 164-736 |
| Cow position: | chr12:32653186-32653772 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 340 |
| Conread position: | 164-736 |
| Cow position: | chr12:37558198-37558784 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 254-645 |
| Cow position: | chr12:8982680-8982287 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 224 |
| Conread position: | 300-736 |
| Cow position: | chr12:45261405-45261851 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 175 |
| Conread position: | 301-722 |
| Cow position: | chr12:17975343-17975751 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 276 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 262, 6 |
| Conread position: | 301-740 |
| Cow position: | chr12:21227660-21227217 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 283 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 10, 35 |
| Conread position: | 303-454 |
| Cow position: | chr12:42420327-42420176 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 303-732 |
| Cow position: | chr12:26947187-26946761 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 143 |
| Conread position: | 400-813 |
| Cow position: | chr12:18500941-18501340 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 286 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 349, 27 |
| Conread position: | 459-796 |
| Cow position: | chr12:2838903-2838564 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 15 |
| Conread position: | 470-813 |
| Cow position: | chr12:48405233-48405562 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 68, 62 |
| Conread position: | 470-824 |
| Cow position: | chr12:34854833-34854481 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 254, 48 |
| Conread position: | 485-736 |
| Cow position: | chr12:21197935-21198188 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 186 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 36, 47 |
| Conread position: | 504-736 |
| Cow position: | chr12:33986158-33986390 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 108 |
| Conread position: | 563-736 |
| Cow position: | chr12:5861209-5861382 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 58, 46 |
| Conread position: | 569-736 |
| Cow position: | chr12:23240065-23240231 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 53, 43 |
Show alignments to all cow chromosomes.