Cow genome map
Conread name: | Ss1.1-rspc011_k9.5 |
Conread position: | 65-736 |
Cow position: | chr13:6668824-6668116 (view UCSC Genome Browser custom track) |
Alignm length: | 710 |
Alignm identity: | 494 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 584 |
Conread position: | 68-812 |
Cow position: | chr13:34936459-34937239 (view UCSC Genome Browser custom track) |
Alignm length: | 791 |
Alignm identity: | 566 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 25, 6 |
Conread position: | 70-504 |
Cow position: | chr13:30237485-30237942 (view UCSC Genome Browser custom track) |
Alignm length: | 468 |
Alignm identity: | 313 |
Alignm E-value: | 3e-35 |
Alignm gaps (pig, cow): | 105, 313 |
Conread position: | 76-800 |
Cow position: | chr13:30063478-30064196 (view UCSC Genome Browser custom track) |
Alignm length: | 746 |
Alignm identity: | 485 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 15 |
Conread position: | 78-413 |
Cow position: | chr13:13046485-13046142 (view UCSC Genome Browser custom track) |
Alignm length: | 350 |
Alignm identity: | 243 |
Alignm E-value: | 4.99997e-41 |
Alignm gaps (pig, cow): | 35, 73 |
Conread position: | 78-574 |
Cow position: | chr13:2232009-2232505 (view UCSC Genome Browser custom track) |
Alignm length: | 511 |
Alignm identity: | 362 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 222, 72 |
Conread position: | 78-607 |
Cow position: | chr13:48356648-48357183 (view UCSC Genome Browser custom track) |
Alignm length: | 557 |
Alignm identity: | 374 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 128 |
Conread position: | 78-626 |
Cow position: | chr13:15080854-15080317 (view UCSC Genome Browser custom track) |
Alignm length: | 559 |
Alignm identity: | 360 |
Alignm E-value: | 1.99993e-41 |
Alignm gaps (pig, cow): | 77, 66 |
Conread position: | 78-736 |
Cow position: | chr13:3276495-3277161 (view UCSC Genome Browser custom track) |
Alignm length: | 676 |
Alignm identity: | 498 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 148, 53 |
Conread position: | 78-736 |
Cow position: | chr13:9043847-9044507 (view UCSC Genome Browser custom track) |
Alignm length: | 677 |
Alignm identity: | 490 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 136, 29 |
Conread position: | 78-736 |
Cow position: | chr13:30657625-30656970 (view UCSC Genome Browser custom track) |
Alignm length: | 674 |
Alignm identity: | 492 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 142, 70 |
Conread position: | 78-736 |
Cow position: | chr13:34326344-34325668 (view UCSC Genome Browser custom track) |
Alignm length: | 680 |
Alignm identity: | 507 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 147, 267 |
Conread position: | 78-736 |
Cow position: | chr13:62328243-62327577 (view UCSC Genome Browser custom track) |
Alignm length: | 674 |
Alignm identity: | 490 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 157, 72 |
Conread position: | 79-732 |
Cow position: | chr13:33825400-33824732 (view UCSC Genome Browser custom track) |
Alignm length: | 680 |
Alignm identity: | 492 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 144, 52 |
Conread position: | 81-736 |
Cow position: | chr13:31831949-31832607 (view UCSC Genome Browser custom track) |
Alignm length: | 671 |
Alignm identity: | 505 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 26 |
Conread position: | 84-732 |
Cow position: | chr13:34143317-34142655 (view UCSC Genome Browser custom track) |
Alignm length: | 670 |
Alignm identity: | 496 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 123, 66 |
Conread position: | 84-736 |
Cow position: | chr13:2909102-2908442 (view UCSC Genome Browser custom track) |
Alignm length: | 669 |
Alignm identity: | 495 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 142, 66 |
Conread position: | 87-736 |
Cow position: | chr13:32738484-32737815 (view UCSC Genome Browser custom track) |
Alignm length: | 672 |
Alignm identity: | 481 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 80, 493 |
Conread position: | 99-813 |
Cow position: | chr13:54283931-54284658 (view UCSC Genome Browser custom track) |
Alignm length: | 747 |
Alignm identity: | 561 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 175 |
Conread position: | 102-740 |
Cow position: | chr13:31560532-31561199 (view UCSC Genome Browser custom track) |
Alignm length: | 677 |
Alignm identity: | 426 |
Alignm E-value: | 4e-39 |
Alignm gaps (pig, cow): | 34, 202 |
Conread position: | 131-722 |
Cow position: | chr13:19438335-19438926 (view UCSC Genome Browser custom track) |
Alignm length: | 604 |
Alignm identity: | 383 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 90, 142 |
Conread position: | 148-736 |
Cow position: | chr13:34042964-34042362 (view UCSC Genome Browser custom track) |
Alignm length: | 608 |
Alignm identity: | 440 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 23, 347 |
Conread position: | 150-440 |
Cow position: | chr13:3058592-3058283 (view UCSC Genome Browser custom track) |
Alignm length: | 310 |
Alignm identity: | 219 |
Alignm E-value: | 4e-39 |
Alignm gaps (pig, cow): | 14, 0 |
Conread position: | 150-723 |
Cow position: | chr13:33336918-33336348 (view UCSC Genome Browser custom track) |
Alignm length: | 591 |
Alignm identity: | 415 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 69, 12 |
Conread position: | 150-736 |
Cow position: | chr13:2389395-2388811 (view UCSC Genome Browser custom track) |
Alignm length: | 605 |
Alignm identity: | 424 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 178 |
Conread position: | 150-736 |
Cow position: | chr13:4872480-4873083 (view UCSC Genome Browser custom track) |
Alignm length: | 606 |
Alignm identity: | 437 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 477 |
Conread position: | 151-334 |
Cow position: | chr13:15542870-15543056 (view UCSC Genome Browser custom track) |
Alignm length: | 189 |
Alignm identity: | 135 |
Alignm E-value: | 7e-23 |
Alignm gaps (pig, cow): | 68, 99 |
Conread position: | 151-464 |
Cow position: | chr13:4481881-4482206 (view UCSC Genome Browser custom track) |
Alignm length: | 332 |
Alignm identity: | 235 |
Alignm E-value: | 2e-40 |
Alignm gaps (pig, cow): | 68, 227 |
Conread position: | 151-528 |
Cow position: | chr13:32544353-32544740 (view UCSC Genome Browser custom track) |
Alignm length: | 388 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 0 |
Conread position: | 151-610 |
Cow position: | chr13:30302477-30302945 (view UCSC Genome Browser custom track) |
Alignm length: | 476 |
Alignm identity: | 340 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 130 |
Conread position: | 151-732 |
Cow position: | chr13:1593750-1593152 (view UCSC Genome Browser custom track) |
Alignm length: | 601 |
Alignm identity: | 439 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 375 |
Conread position: | 151-732 |
Cow position: | chr13:33928146-33927584 (view UCSC Genome Browser custom track) |
Alignm length: | 593 |
Alignm identity: | 425 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 155, 76 |
Conread position: | 151-736 |
Cow position: | chr13:3654901-3654319 (view UCSC Genome Browser custom track) |
Alignm length: | 602 |
Alignm identity: | 428 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 84, 75 |
Conread position: | 151-736 |
Cow position: | chr13:4940491-4941095 (view UCSC Genome Browser custom track) |
Alignm length: | 605 |
Alignm identity: | 432 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 0 |
Conread position: | 151-736 |
Cow position: | chr13:15521109-15520508 (view UCSC Genome Browser custom track) |
Alignm length: | 602 |
Alignm identity: | 442 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 0 |
Conread position: | 151-736 |
Cow position: | chr13:35756636-35757248 (view UCSC Genome Browser custom track) |
Alignm length: | 613 |
Alignm identity: | 445 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 0 |
Conread position: | 154-560 |
Cow position: | chr13:34868180-34868604 (view UCSC Genome Browser custom track) |
Alignm length: | 427 |
Alignm identity: | 305 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 81, 260 |
Conread position: | 154-732 |
Cow position: | chr13:2305915-2306497 (view UCSC Genome Browser custom track) |
Alignm length: | 596 |
Alignm identity: | 377 |
Alignm E-value: | 5.99756e-43 |
Alignm gaps (pig, cow): | 78, 32 |
Conread position: | 154-736 |
Cow position: | chr13:15924975-15924377 (view UCSC Genome Browser custom track) |
Alignm length: | 601 |
Alignm identity: | 442 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 258 |
Conread position: | 154-736 |
Cow position: | chr13:21840788-21840187 (view UCSC Genome Browser custom track) |
Alignm length: | 603 |
Alignm identity: | 439 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 477 |
Conread position: | 154-736 |
Cow position: | chr13:31612927-31612329 (view UCSC Genome Browser custom track) |
Alignm length: | 602 |
Alignm identity: | 443 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 71, 460 |
Conread position: | 154-736 |
Cow position: | chr13:34187280-34186680 (view UCSC Genome Browser custom track) |
Alignm length: | 603 |
Alignm identity: | 455 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 72, 550 |
Conread position: | 154-736 |
Cow position: | chr13:34911956-34911372 (view UCSC Genome Browser custom track) |
Alignm length: | 597 |
Alignm identity: | 450 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 71, 178 |
Conread position: | 154-740 |
Cow position: | chr13:22186307-22185727 (view UCSC Genome Browser custom track) |
Alignm length: | 602 |
Alignm identity: | 383 |
Alignm E-value: | 4.99997e-41 |
Alignm gaps (pig, cow): | 56, 47 |
Conread position: | 157-736 |
Cow position: | chr13:34692574-34693172 (view UCSC Genome Browser custom track) |
Alignm length: | 601 |
Alignm identity: | 451 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 69, 109 |
Conread position: | 157-813 |
Cow position: | chr13:20542950-20542283 (view UCSC Genome Browser custom track) |
Alignm length: | 681 |
Alignm identity: | 504 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 69, 98 |
Conread position: | 157-824 |
Cow position: | chr13:60701855-60701204 (view UCSC Genome Browser custom track) |
Alignm length: | 682 |
Alignm identity: | 439 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 143, 69 |
Conread position: | 164-682 |
Cow position: | chr13:30245316-30244780 (view UCSC Genome Browser custom track) |
Alignm length: | 538 |
Alignm identity: | 381 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 39, 459 |
Conread position: | 164-724 |
Cow position: | chr13:31734654-31734090 (view UCSC Genome Browser custom track) |
Alignm length: | 578 |
Alignm identity: | 413 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 39, 62 |
Conread position: | 164-733 |
Cow position: | chr13:2297379-2296807 (view UCSC Genome Browser custom track) |
Alignm length: | 588 |
Alignm identity: | 411 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 72, 63 |
Conread position: | 164-736 |
Cow position: | chr13:17307903-17308482 (view UCSC Genome Browser custom track) |
Alignm length: | 584 |
Alignm identity: | 427 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 60, 81 |
Conread position: | 164-736 |
Cow position: | chr13:32986628-32986050 (view UCSC Genome Browser custom track) |
Alignm length: | 588 |
Alignm identity: | 420 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 39, 338 |
Conread position: | 164-736 |
Cow position: | chr13:50108884-50109469 (view UCSC Genome Browser custom track) |
Alignm length: | 588 |
Alignm identity: | 416 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 61, 241 |
Conread position: | 164-740 |
Cow position: | chr13:30140412-30141018 (view UCSC Genome Browser custom track) |
Alignm length: | 614 |
Alignm identity: | 402 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 5 |
Conread position: | 221-723 |
Cow position: | chr13:43852809-43852301 (view UCSC Genome Browser custom track) |
Alignm length: | 515 |
Alignm identity: | 309 |
Alignm E-value: | 3e-25 |
Alignm gaps (pig, cow): | 19, 67 |
Conread position: | 250-736 |
Cow position: | chr13:13324265-13324756 (view UCSC Genome Browser custom track) |
Alignm length: | 495 |
Alignm identity: | 368 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 50, 107 |
Conread position: | 299-720 |
Cow position: | chr13:23003947-23003527 (view UCSC Genome Browser custom track) |
Alignm length: | 424 |
Alignm identity: | 312 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 146, 286 |
Conread position: | 299-724 |
Cow position: | chr13:21130897-21131316 (view UCSC Genome Browser custom track) |
Alignm length: | 433 |
Alignm identity: | 287 |
Alignm E-value: | 4.99997e-41 |
Alignm gaps (pig, cow): | 94, 69 |
Conread position: | 301-736 |
Cow position: | chr13:49973253-49973691 (view UCSC Genome Browser custom track) |
Alignm length: | 440 |
Alignm identity: | 335 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 144, 314 |
Conread position: | 303-636 |
Cow position: | chr13:2583729-2583399 (view UCSC Genome Browser custom track) |
Alignm length: | 338 |
Alignm identity: | 213 |
Alignm E-value: | 3e-24 |
Alignm gaps (pig, cow): | 12, 89 |
Conread position: | 306-732 |
Cow position: | chr13:35030124-35030555 (view UCSC Genome Browser custom track) |
Alignm length: | 444 |
Alignm identity: | 283 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 128, 56 |
Conread position: | 307-736 |
Cow position: | chr13:56730705-56730280 (view UCSC Genome Browser custom track) |
Alignm length: | 433 |
Alignm identity: | 337 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 137, 89 |
Conread position: | 352-579 |
Cow position: | chr13:15451863-15451649 (view UCSC Genome Browser custom track) |
Alignm length: | 228 |
Alignm identity: | 168 |
Alignm E-value: | 7e-33 |
Alignm gaps (pig, cow): | 92, 0 |
Conread position: | 368-798 |
Cow position: | chr13:34767638-34767214 (view UCSC Genome Browser custom track) |
Alignm length: | 440 |
Alignm identity: | 305 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 76, 59 |
Conread position: | 371-730 |
Cow position: | chr13:3567425-3567795 (view UCSC Genome Browser custom track) |
Alignm length: | 373 |
Alignm identity: | 284 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 17 |
Conread position: | 435-634 |
Cow position: | chr13:10114945-10114748 (view UCSC Genome Browser custom track) |
Alignm length: | 204 |
Alignm identity: | 149 |
Alignm E-value: | 4e-28 |
Alignm gaps (pig, cow): | 70, 152 |
Conread position: | 435-761 |
Cow position: | chr13:47230280-47229957 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 243 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 0 |
Conread position: | 449-736 |
Cow position: | chr13:28672914-28672629 (view UCSC Genome Browser custom track) |
Alignm length: | 291 |
Alignm identity: | 188 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 19, 15 |
Conread position: | 459-740 |
Cow position: | chr13:16343484-16343206 (view UCSC Genome Browser custom track) |
Alignm length: | 288 |
Alignm identity: | 204 |
Alignm E-value: | 3e-36 |
Alignm gaps (pig, cow): | 66, 11 |
Conread position: | 470-788 |
Cow position: | chr13:46732479-46732161 (view UCSC Genome Browser custom track) |
Alignm length: | 329 |
Alignm identity: | 220 |
Alignm E-value: | 4e-28 |
Alignm gaps (pig, cow): | 33, 14 |
Conread position: | 497-732 |
Cow position: | chr13:4178883-4178648 (view UCSC Genome Browser custom track) |
Alignm length: | 237 |
Alignm identity: | 179 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 124, 115 |
Conread position: | 500-736 |
Cow position: | chr13:4483569-4483801 (view UCSC Genome Browser custom track) |
Alignm length: | 237 |
Alignm identity: | 175 |
Alignm E-value: | 1.99993e-41 |
Alignm gaps (pig, cow): | 52, 0 |
Conread position: | 507-699 |
Cow position: | chr13:11800004-11799811 (view UCSC Genome Browser custom track) |
Alignm length: | 201 |
Alignm identity: | 148 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 114, 7 |
Conread position: | 512-741 |
Cow position: | chr13:3338570-3338800 (view UCSC Genome Browser custom track) |
Alignm length: | 232 |
Alignm identity: | 154 |
Alignm E-value: | 8e-24 |
Alignm gaps (pig, cow): | 109, 97 |
Conread position: | 552-736 |
Cow position: | chr13:3058289-3058103 (view UCSC Genome Browser custom track) |
Alignm length: | 188 |
Alignm identity: | 147 |
Alignm E-value: | 3e-37 |
Alignm gaps (pig, cow): | 8, 61 |
Conread position: | 556-687 |
Cow position: | chr13:30237945-30238076 (view UCSC Genome Browser custom track) |
Alignm length: | 132 |
Alignm identity: | 107 |
Alignm E-value: | 1e-29 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 557-736 |
Cow position: | chr13:60466165-60466344 (view UCSC Genome Browser custom track) |
Alignm length: | 180 |
Alignm identity: | 139 |
Alignm E-value: | 3e-37 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 588-736 |
Cow position: | chr13:32544918-32545066 (view UCSC Genome Browser custom track) |
Alignm length: | 149 |
Alignm identity: | 115 |
Alignm E-value: | 4e-29 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 597-732 |
Cow position: | chr13:34868608-34868745 (view UCSC Genome Browser custom track) |
Alignm length: | 139 |
Alignm identity: | 112 |
Alignm E-value: | 1e-27 |
Alignm gaps (pig, cow): | 21, 90 |
Conread position: | 612-736 |
Cow position: | chr13:676758-676883 (view UCSC Genome Browser custom track) |
Alignm length: | 126 |
Alignm identity: | 104 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 9, 0 |
Conread position: | 638-813 |
Cow position: | chr13:15451647-15451470 (view UCSC Genome Browser custom track) |
Alignm length: | 183 |
Alignm identity: | 133 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 98, 133 |
Show alignments to all cow chromosomes.