Cow genome map

Conread name: Ss1.1-rspc011_k9.5

Conread position: 65-736
Cow position: chr13:6668824-6668116 (view UCSC Genome Browser custom track)
Alignm length: 710
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 584

Conread position: 68-812
Cow position: chr13:34936459-34937239 (view UCSC Genome Browser custom track)
Alignm length: 791
Alignm identity: 566
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 6

Conread position: 70-504
Cow position: chr13:30237485-30237942 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 313
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 105, 313

Conread position: 76-800
Cow position: chr13:30063478-30064196 (view UCSC Genome Browser custom track)
Alignm length: 746
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 15

Conread position: 78-413
Cow position: chr13:13046485-13046142 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 243
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 35, 73

Conread position: 78-574
Cow position: chr13:2232009-2232505 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 72

Conread position: 78-607
Cow position: chr13:48356648-48357183 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 128

Conread position: 78-626
Cow position: chr13:15080854-15080317 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 360
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 77, 66

Conread position: 78-736
Cow position: chr13:3276495-3277161 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 53

Conread position: 78-736
Cow position: chr13:9043847-9044507 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 29

Conread position: 78-736
Cow position: chr13:30657625-30656970 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 70

Conread position: 78-736
Cow position: chr13:34326344-34325668 (view UCSC Genome Browser custom track)
Alignm length: 680
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 267

Conread position: 78-736
Cow position: chr13:62328243-62327577 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 72

Conread position: 79-732
Cow position: chr13:33825400-33824732 (view UCSC Genome Browser custom track)
Alignm length: 680
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 52

Conread position: 81-736
Cow position: chr13:31831949-31832607 (view UCSC Genome Browser custom track)
Alignm length: 671
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 26

Conread position: 84-732
Cow position: chr13:34143317-34142655 (view UCSC Genome Browser custom track)
Alignm length: 670
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 66

Conread position: 84-736
Cow position: chr13:2909102-2908442 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 66

Conread position: 87-736
Cow position: chr13:32738484-32737815 (view UCSC Genome Browser custom track)
Alignm length: 672
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 493

Conread position: 99-813
Cow position: chr13:54283931-54284658 (view UCSC Genome Browser custom track)
Alignm length: 747
Alignm identity: 561
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 175

Conread position: 102-740
Cow position: chr13:31560532-31561199 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 426
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 34, 202

Conread position: 131-722
Cow position: chr13:19438335-19438926 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 142

Conread position: 148-736
Cow position: chr13:34042964-34042362 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 347

Conread position: 150-440
Cow position: chr13:3058592-3058283 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 219
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 14, 0

Conread position: 150-723
Cow position: chr13:33336918-33336348 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 12

Conread position: 150-736
Cow position: chr13:2389395-2388811 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 178

Conread position: 150-736
Cow position: chr13:4872480-4873083 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 477

Conread position: 151-334
Cow position: chr13:15542870-15543056 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 135
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 68, 99

Conread position: 151-464
Cow position: chr13:4481881-4482206 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 235
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 68, 227

Conread position: 151-528
Cow position: chr13:32544353-32544740 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 151-610
Cow position: chr13:30302477-30302945 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 130

Conread position: 151-732
Cow position: chr13:1593750-1593152 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 375

Conread position: 151-732
Cow position: chr13:33928146-33927584 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 76

Conread position: 151-736
Cow position: chr13:3654901-3654319 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 75

Conread position: 151-736
Cow position: chr13:4940491-4941095 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 151-736
Cow position: chr13:15521109-15520508 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 151-736
Cow position: chr13:35756636-35757248 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 154-560
Cow position: chr13:34868180-34868604 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 260

Conread position: 154-732
Cow position: chr13:2305915-2306497 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 377
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 78, 32

Conread position: 154-736
Cow position: chr13:15924975-15924377 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 258

Conread position: 154-736
Cow position: chr13:21840788-21840187 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 477

Conread position: 154-736
Cow position: chr13:31612927-31612329 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 460

Conread position: 154-736
Cow position: chr13:34187280-34186680 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 550

Conread position: 154-736
Cow position: chr13:34911956-34911372 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 178

Conread position: 154-740
Cow position: chr13:22186307-22185727 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 383
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 56, 47

Conread position: 157-736
Cow position: chr13:34692574-34693172 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 109

Conread position: 157-813
Cow position: chr13:20542950-20542283 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 98

Conread position: 157-824
Cow position: chr13:60701855-60701204 (view UCSC Genome Browser custom track)
Alignm length: 682
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 69

Conread position: 164-682
Cow position: chr13:30245316-30244780 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 459

Conread position: 164-724
Cow position: chr13:31734654-31734090 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 62

Conread position: 164-733
Cow position: chr13:2297379-2296807 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 63

Conread position: 164-736
Cow position: chr13:17307903-17308482 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 81

Conread position: 164-736
Cow position: chr13:32986628-32986050 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 338

Conread position: 164-736
Cow position: chr13:50108884-50109469 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 241

Conread position: 164-740
Cow position: chr13:30140412-30141018 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 5

Conread position: 221-723
Cow position: chr13:43852809-43852301 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 309
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 19, 67

Conread position: 250-736
Cow position: chr13:13324265-13324756 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 107

Conread position: 299-720
Cow position: chr13:23003947-23003527 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 286

Conread position: 299-724
Cow position: chr13:21130897-21131316 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 287
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 94, 69

Conread position: 301-736
Cow position: chr13:49973253-49973691 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 314

Conread position: 303-636
Cow position: chr13:2583729-2583399 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 213
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 12, 89

Conread position: 306-732
Cow position: chr13:35030124-35030555 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 56

Conread position: 307-736
Cow position: chr13:56730705-56730280 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 89

Conread position: 352-579
Cow position: chr13:15451863-15451649 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 168
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 92, 0

Conread position: 368-798
Cow position: chr13:34767638-34767214 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 59

Conread position: 371-730
Cow position: chr13:3567425-3567795 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 17

Conread position: 435-634
Cow position: chr13:10114945-10114748 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 149
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 70, 152

Conread position: 435-761
Cow position: chr13:47230280-47229957 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 449-736
Cow position: chr13:28672914-28672629 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 188
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 19, 15

Conread position: 459-740
Cow position: chr13:16343484-16343206 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 204
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 66, 11

Conread position: 470-788
Cow position: chr13:46732479-46732161 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 220
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 33, 14

Conread position: 497-732
Cow position: chr13:4178883-4178648 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 115

Conread position: 500-736
Cow position: chr13:4483569-4483801 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 175
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 52, 0

Conread position: 507-699
Cow position: chr13:11800004-11799811 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 148
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 114, 7

Conread position: 512-741
Cow position: chr13:3338570-3338800 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 154
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 109, 97

Conread position: 552-736
Cow position: chr13:3058289-3058103 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 147
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 8, 61

Conread position: 556-687
Cow position: chr13:30237945-30238076 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 107
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 557-736
Cow position: chr13:60466165-60466344 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 139
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 588-736
Cow position: chr13:32544918-32545066 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 597-732
Cow position: chr13:34868608-34868745 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 112
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 21, 90

Conread position: 612-736
Cow position: chr13:676758-676883 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 104
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 9, 0

Conread position: 638-813
Cow position: chr13:15451647-15451470 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 133
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 98, 133

Show alignments to all cow chromosomes.