Cow genome map


           Conread name:
           Ss1.1-rspc011_k9.5
        

               Conread position:
               49-684
               

               Cow position:
               
               

               Alignm length:
               657
               

               Alignm identity:
               427
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 29
               

               Conread position:
               63-736
               

               Cow position:
               
               

               Alignm length:
               688
               

               Alignm identity:
               485
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 59
               

               Conread position:
               69-736
               

               Cow position:
               
               

               Alignm length:
               687
               

               Alignm identity:
               482
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 9
               

               Conread position:
               69-736
               

               Cow position:
               
               

               Alignm length:
               690
               

               Alignm identity:
               490
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 28
               

               Conread position:
               69-736
               

               Cow position:
               
               

               Alignm length:
               690
               

               Alignm identity:
               469
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 75
               

               Conread position:
               72-551
               

               Cow position:
               
               

               Alignm length:
               498
               

               Alignm identity:
               336
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               12, 32
               

               Conread position:
               74-813
               

               Cow position:
               
               

               Alignm length:
               779
               

               Alignm identity:
               551
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 336
               

               Conread position:
               75-741
               

               Cow position:
               
               

               Alignm length:
               687
               

               Alignm identity:
               445
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 105
               

               Conread position:
               75-791
               

               Cow position:
               
               

               Alignm length:
               755
               

               Alignm identity:
               491
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 307
               

               Conread position:
               75-813
               

               Cow position:
               
               

               Alignm length:
               759
               

               Alignm identity:
               485
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 37
               

               Conread position:
               78-338
               

               Cow position:
               
               

               Alignm length:
               273
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               147, 72
               

               Conread position:
               78-508
               

               Cow position:
               
               

               Alignm length:
               449
               

               Alignm identity:
               296
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               75, 34
               

               Conread position:
               78-714
               

               Cow position:
               
               

               Alignm length:
               657
               

               Alignm identity:
               423
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               81, 144
               

               Conread position:
               78-720
               

               Cow position:
               
               

               Alignm length:
               666
               

               Alignm identity:
               486
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 28
               

               Conread position:
               78-732
               

               Cow position:
               
               

               Alignm length:
               679
               

               Alignm identity:
               464
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 313
               

               Conread position:
               78-736
               

               Cow position:
               
               

               Alignm length:
               683
               

               Alignm identity:
               466
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 57
               

               Conread position:
               78-736
               

               Cow position:
               
               

               Alignm length:
               686
               

               Alignm identity:
               491
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 611
               

               Conread position:
               78-736
               

               Cow position:
               
               

               Alignm length:
               680
               

               Alignm identity:
               494
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 72
               

               Conread position:
               78-736
               

               Cow position:
               
               

               Alignm length:
               696
               

               Alignm identity:
               491
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 463
               

               Conread position:
               78-736
               

               Cow position:
               
               

               Alignm length:
               697
               

               Alignm identity:
               470
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 170
               

               Conread position:
               78-737
               

               Cow position:
               
               

               Alignm length:
               691
               

               Alignm identity:
               473
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 27
               

               Conread position:
               78-813
               

               Cow position:
               
               

               Alignm length:
               782
               

               Alignm identity:
               552
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 334
               

               Conread position:
               78-813
               

               Cow position:
               
               

               Alignm length:
               772
               

               Alignm identity:
               534
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 34
               

               Conread position:
               81-736
               

               Cow position:
               
               

               Alignm length:
               670
               

               Alignm identity:
               488
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 70
               

               Conread position:
               82-732
               

               Cow position:
               
               

               Alignm length:
               670
               

               Alignm identity:
               501
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 16
               

               Conread position:
               84-696
               

               Cow position:
               
               

               Alignm length:
               634
               

               Alignm identity:
               409
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 116
               

               Conread position:
               84-736
               

               Cow position:
               
               

               Alignm length:
               668
               

               Alignm identity:
               483
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 38
               

               Conread position:
               87-732
               

               Cow position:
               
               

               Alignm length:
               665
               

               Alignm identity:
               426
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 119
               

               Conread position:
               90-736
               

               Cow position:
               
               

               Alignm length:
               669
               

               Alignm identity:
               495
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 42
               

               Conread position:
               109-736
               

               Cow position:
               
               

               Alignm length:
               652
               

               Alignm identity:
               483
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 29
               

               Conread position:
               146-616
               

               Cow position:
               
               

               Alignm length:
               493
               

               Alignm identity:
               325
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               9, 290
               

               Conread position:
               150-736
               

               Cow position:
               
               

               Alignm length:
               606
               

               Alignm identity:
               448
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 370
               

               Conread position:
               151-721
               

               Cow position:
               
               

               Alignm length:
               589
               

               Alignm identity:
               414
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 236
               

               Conread position:
               151-732
               

               Cow position:
               
               

               Alignm length:
               601
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 567
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               598
               

               Alignm identity:
               438
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               603
               

               Alignm identity:
               434
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 236
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               604
               

               Alignm identity:
               436
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 190
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               601
               

               Alignm identity:
               437
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 233
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               601
               

               Alignm identity:
               443
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               603
               

               Alignm identity:
               443
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 75
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               604
               

               Alignm identity:
               446
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               617
               

               Alignm identity:
               423
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 264
               

               Conread position:
               152-691
               

               Cow position:
               
               

               Alignm length:
               547
               

               Alignm identity:
               366
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 114
               

               Conread position:
               152-732
               

               Cow position:
               
               

               Alignm length:
               602
               

               Alignm identity:
               433
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 98
               

               Conread position:
               153-590
               

               Cow position:
               
               

               Alignm length:
               456
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 46
               

               Conread position:
               154-703
               

               Cow position:
               
               

               Alignm length:
               574
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 38
               

               Conread position:
               154-720
               

               Cow position:
               
               

               Alignm length:
               582
               

               Alignm identity:
               425
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 41
               

               Conread position:
               154-732
               

               Cow position:
               
               

               Alignm length:
               599
               

               Alignm identity:
               439
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 196
               

               Conread position:
               154-736
               

               Cow position:
               
               

               Alignm length:
               608
               

               Alignm identity:
               441
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 119
               

               Conread position:
               157-740
               

               Cow position:
               
               

               Alignm length:
               597
               

               Alignm identity:
               382
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               50, 42
               

               Conread position:
               159-815
               

               Cow position:
               
               

               Alignm length:
               685
               

               Alignm identity:
               464
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 93
               

               Conread position:
               163-729
               

               Cow position:
               
               

               Alignm length:
               589
               

               Alignm identity:
               411
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 190
               

               Conread position:
               164-736
               

               Cow position:
               
               

               Alignm length:
               588
               

               Alignm identity:
               421
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 79
               

               Conread position:
               164-736
               

               Cow position:
               
               

               Alignm length:
               593
               

               Alignm identity:
               430
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 386
               

               Conread position:
               164-736
               

               Cow position:
               
               

               Alignm length:
               589
               

               Alignm identity:
               424
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 80
               

               Conread position:
               164-736
               

               Cow position:
               
               

               Alignm length:
               594
               

               Alignm identity:
               425
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 330
               

               Conread position:
               164-736
               

               Cow position:
               
               

               Alignm length:
               592
               

               Alignm identity:
               425
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 182
               

               Conread position:
               164-736
               

               Cow position:
               
               

               Alignm length:
               590
               

               Alignm identity:
               444
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 209
               

               Conread position:
               164-736
               

               Cow position:
               
               

               Alignm length:
               595
               

               Alignm identity:
               426
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 424
               

               Conread position:
               164-736
               

               Cow position:
               
               

               Alignm length:
               590
               

               Alignm identity:
               421
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 464
               

               Conread position:
               166-736
               

               Cow position:
               
               

               Alignm length:
               582
               

               Alignm identity:
               411
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 129
               

               Conread position:
               170-736
               

               Cow position:
               
               

               Alignm length:
               585
               

               Alignm identity:
               446
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 17
               

               Conread position:
               173-424
               

               Cow position:
               
               

               Alignm length:
               263
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               51, 122
               

               Conread position:
               176-736
               

               Cow position:
               
               

               Alignm length:
               575
               

               Alignm identity:
               394
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 232
               

               Conread position:
               190-813
               

               Cow position:
               
               

               Alignm length:
               647
               

               Alignm identity:
               429
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 50
               

               Conread position:
               219-736
               

               Cow position:
               
               

               Alignm length:
               531
               

               Alignm identity:
               391
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 175
               

               Conread position:
               219-736
               

               Cow position:
               
               

               Alignm length:
               532
               

               Alignm identity:
               395
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 22
               

               Conread position:
               250-548
               

               Cow position:
               
               

               Alignm length:
               314
               

               Alignm identity:
               219
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               50, 12
               

               Conread position:
               299-737
               

               Cow position:
               
               

               Alignm length:
               450
               

               Alignm identity:
               291
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               77, 20
               

               Conread position:
               300-736
               

               Cow position:
               
               

               Alignm length:
               440
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               145, 6
               

               Conread position:
               301-484
               

               Cow position:
               
               

               Alignm length:
               184
               

               Alignm identity:
               140
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               164, 0
               

               Conread position:
               301-493
               

               Cow position:
               
               

               Alignm length:
               197
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               49, 87
               

               Conread position:
               301-736
               

               Cow position:
               
               

               Alignm length:
               439
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 204
               

               Conread position:
               301-736
               

               Cow position:
               
               

               Alignm length:
               438
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               139, 95
               

               Conread position:
               301-736
               

               Cow position:
               
               

               Alignm length:
               439
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 313
               

               Conread position:
               301-736
               

               Cow position:
               
               

               Alignm length:
               447
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 76
               

               Conread position:
               301-738
               

               Cow position:
               
               

               Alignm length:
               443
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 300
               

               Conread position:
               301-740
               

               Cow position:
               
               

               Alignm length:
               448
               

               Alignm identity:
               282
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               14, 6
               

               Conread position:
               302-809
               

               Cow position:
               
               

               Alignm length:
               521
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 154
               

               Conread position:
               303-740
               

               Cow position:
               
               

               Alignm length:
               441
               

               Alignm identity:
               278
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               10, 15
               

               Conread position:
               303-740
               

               Cow position:
               
               

               Alignm length:
               444
               

               Alignm identity:
               282
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               139, 89
               

               Conread position:
               304-693
               

               Cow position:
               
               

               Alignm length:
               393
               

               Alignm identity:
               255
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               141, 208
               

               Conread position:
               305-812
               

               Cow position:
               
               

               Alignm length:
               521
               

               Alignm identity:
               344
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               58, 68
               

               Conread position:
               337-736
               

               Cow position:
               
               

               Alignm length:
               403
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 11
               

               Conread position:
               341-736
               

               Cow position:
               
               

               Alignm length:
               402
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 270
               

               Conread position:
               355-736
               

               Cow position:
               
               

               Alignm length:
               385
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 16
               

               Conread position:
               395-736
               

               Cow position:
               
               

               Alignm length:
               344
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               403-740
               

               Cow position:
               
               

               Alignm length:
               342
               

               Alignm identity:
               232
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               140, 44
               

               Conread position:
               403-813
               

               Cow position:
               
               

               Alignm length:
               417
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 271
               

               Conread position:
               412-731
               

               Cow position:
               
               

               Alignm length:
               323
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 55
               

               Conread position:
               435-736
               

               Cow position:
               
               

               Alignm length:
               303
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               186, 30
               

               Conread position:
               438-730
               

               Cow position:
               
               

               Alignm length:
               297
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 67
               

               Conread position:
               466-724
               

               Cow position:
               
               

               Alignm length:
               261
               

               Alignm identity:
               175
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               91, 48
               

               Conread position:
               466-736
               

               Cow position:
               
               

               Alignm length:
               272
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 53
               

               Conread position:
               476-736
               

               Cow position:
               
               

               Alignm length:
               261
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               492-671
               

               Cow position:
               
               

               Alignm length:
               181
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               169, 78
               

               Conread position:
               504-724
               

               Cow position:
               
               

               Alignm length:
               223
               

               Alignm identity:
               170
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               529-736
               

               Cow position:
               
               

               Alignm length:
               210
               

               Alignm identity:
               166
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               10, 69
               

               Conread position:
               537-736
               

               Cow position:
               
               

               Alignm length:
               201
               

               Alignm identity:
               162
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 75
               

               Conread position:
               537-813
               

               Cow position:
               
               

               Alignm length:
               284
               

               Alignm identity:
               196
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               187, 16
               

               Conread position:
               545-736
               

               Cow position:
               
               

               Alignm length:
               193
               

               Alignm identity:
               158
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 67
               

               Conread position:
               563-813
               

               Cow position:
               
               

               Alignm length:
               262
               

               Alignm identity:
               183
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               573-732
               

               Cow position:
               
               

               Alignm length:
               161
               

               Alignm identity:
               122
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               586-736
               

               Cow position:
               
               

               Alignm length:
               151
               

               Alignm identity:
               122
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               588-736
               

               Cow position:
               
               

               Alignm length:
               149
               

               Alignm identity:
               114
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               0, 0
               
Show alignments to all cow chromosomes.