Cow genome map

Conread name: Ss1.1-rspc011_k9.5

Conread position: 57-563
Cow position: chr16:25152632-25153127 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 351
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 9, 65

Conread position: 69-722
Cow position: chr16:47562558-47563214 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 25

Conread position: 69-736
Cow position: chr16:2728456-2727751 (view UCSC Genome Browser custom track)
Alignm length: 716
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 45

Conread position: 69-736
Cow position: chr16:8817256-8816567 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 9

Conread position: 72-730
Cow position: chr16:11052033-11052691 (view UCSC Genome Browser custom track)
Alignm length: 671
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 60

Conread position: 75-388
Cow position: chr16:9776991-9777320 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 225
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 25, 33

Conread position: 75-505
Cow position: chr16:23670726-23670289 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 272
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 44, 92

Conread position: 75-729
Cow position: chr16:42051495-42050857 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 27

Conread position: 75-827
Cow position: chr16:9929423-9930179 (view UCSC Genome Browser custom track)
Alignm length: 774
Alignm identity: 542
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 18

Conread position: 78-459
Cow position: chr16:16687717-16688131 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 289
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 26, 348

Conread position: 78-461
Cow position: chr16:49236261-49235853 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 24

Conread position: 78-575
Cow position: chr16:29676438-29675934 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 72

Conread position: 78-732
Cow position: chr16:31593060-31592374 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 658

Conread position: 78-736
Cow position: chr16:14666942-14666292 (view UCSC Genome Browser custom track)
Alignm length: 665
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 106

Conread position: 78-736
Cow position: chr16:29045877-29046559 (view UCSC Genome Browser custom track)
Alignm length: 684
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 106

Conread position: 78-738
Cow position: chr16:25084486-25085160 (view UCSC Genome Browser custom track)
Alignm length: 683
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 40

Conread position: 78-813
Cow position: chr16:25157354-25156596 (view UCSC Genome Browser custom track)
Alignm length: 774
Alignm identity: 567
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 58

Conread position: 80-385
Cow position: chr16:29031780-29032100 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 226
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 35, 58

Conread position: 80-601
Cow position: chr16:54647182-54647719 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 355
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 102, 421

Conread position: 80-704
Cow position: chr16:36232744-36232110 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 118

Conread position: 80-732
Cow position: chr16:15565615-15566277 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 29

Conread position: 80-736
Cow position: chr16:20255438-20254774 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 70

Conread position: 80-813
Cow position: chr16:31376359-31375658 (view UCSC Genome Browser custom track)
Alignm length: 747
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 64

Conread position: 81-401
Cow position: chr16:19713979-19713647 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 234
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 7, 70

Conread position: 82-736
Cow position: chr16:7905513-7906156 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 69

Conread position: 83-812
Cow position: chr16:49257699-49256960 (view UCSC Genome Browser custom track)
Alignm length: 762
Alignm identity: 560
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 67

Conread position: 84-736
Cow position: chr16:6549648-6548987 (view UCSC Genome Browser custom track)
Alignm length: 672
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 65

Conread position: 85-736
Cow position: chr16:36282269-36282934 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 66

Conread position: 87-582
Cow position: chr16:18688263-18687742 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 140

Conread position: 94-813
Cow position: chr16:32935016-32935793 (view UCSC Genome Browser custom track)
Alignm length: 780
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 438

Conread position: 107-721
Cow position: chr16:51685340-51685957 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 125

Conread position: 148-736
Cow position: chr16:1568517-1567917 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 142

Conread position: 148-736
Cow position: chr16:23253570-23252970 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 102

Conread position: 150-645
Cow position: chr16:4303538-4303031 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 250

Conread position: 150-724
Cow position: chr16:6942554-6943157 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 151-430
Cow position: chr16:7676757-7676468 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 215
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 67, 35

Conread position: 151-519
Cow position: chr16:24881751-24881370 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 201

Conread position: 151-736
Cow position: chr16:408096-407494 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 278

Conread position: 151-736
Cow position: chr16:10204479-10203893 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 244

Conread position: 151-736
Cow position: chr16:10437193-10437780 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 233

Conread position: 151-736
Cow position: chr16:12538989-12538388 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 442

Conread position: 151-736
Cow position: chr16:15183742-15184340 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 187

Conread position: 151-736
Cow position: chr16:25340907-25341502 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 245

Conread position: 151-736
Cow position: chr16:25440550-25441161 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 265

Conread position: 151-736
Cow position: chr16:25458539-25457928 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 265

Conread position: 151-736
Cow position: chr16:26662689-26663286 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 52

Conread position: 151-736
Cow position: chr16:27734869-27734265 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 151-736
Cow position: chr16:28472160-28471564 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 397

Conread position: 151-736
Cow position: chr16:40297239-40296641 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 126

Conread position: 151-736
Cow position: chr16:43898332-43897734 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 35

Conread position: 151-738
Cow position: chr16:2484201-2483603 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 326

Conread position: 151-740
Cow position: chr16:23982247-23982852 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 332

Conread position: 154-598
Cow position: chr16:1430166-1430622 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 240

Conread position: 154-711
Cow position: chr16:28438832-28438275 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 359
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 122, 55

Conread position: 154-740
Cow position: chr16:24155487-24154902 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 19

Conread position: 154-813
Cow position: chr16:42740478-42739801 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 86

Conread position: 157-732
Cow position: chr16:15491649-15492242 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 337

Conread position: 157-745
Cow position: chr16:2239788-2239183 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 94

Conread position: 159-560
Cow position: chr16:52815671-52815276 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 30

Conread position: 164-736
Cow position: chr16:31708-32275 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 35

Conread position: 164-736
Cow position: chr16:5918434-5919020 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 367

Conread position: 164-736
Cow position: chr16:28171411-28170826 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 211

Conread position: 165-736
Cow position: chr16:5660817-5661387 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 78

Conread position: 168-603
Cow position: chr16:32605780-32606233 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 0

Conread position: 206-736
Cow position: chr16:2411979-2411432 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 206

Conread position: 250-732
Cow position: chr16:36362309-36361829 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 156

Conread position: 250-736
Cow position: chr16:25187680-25188179 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 373

Conread position: 253-736
Cow position: chr16:10808208-10808687 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 126

Conread position: 253-736
Cow position: chr16:56551170-56551657 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 166

Conread position: 268-736
Cow position: chr16:39820695-39821167 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 184

Conread position: 298-632
Cow position: chr16:16276406-16276074 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 98

Conread position: 299-740
Cow position: chr16:41559772-41560193 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 295
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 227, 55

Conread position: 300-824
Cow position: chr16:55111746-55111222 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 335
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 147, 32

Conread position: 301-736
Cow position: chr16:836131-836566 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 24

Conread position: 301-736
Cow position: chr16:5483423-5483860 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 0

Conread position: 302-706
Cow position: chr16:5651854-5652243 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 275
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 319, 109

Conread position: 302-736
Cow position: chr16:34529428-34529858 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 163

Conread position: 303-660
Cow position: chr16:26650538-26650889 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 35

Conread position: 303-660
Cow position: chr16:40887151-40886799 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 93

Conread position: 303-694
Cow position: chr16:11111834-11111447 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 84

Conread position: 303-812
Cow position: chr16:335405-335907 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 11

Conread position: 316-508
Cow position: chr16:4441990-4442179 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 145
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 19, 12

Conread position: 379-722
Cow position: chr16:16029966-16030307 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 232
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 69, 81

Conread position: 381-577
Cow position: chr16:29032340-29032537 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 143
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 64, 124

Conread position: 411-732
Cow position: chr16:10566069-10565749 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 206
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 93, 13

Conread position: 442-736
Cow position: chr16:9777330-9777622 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 5

Conread position: 443-736
Cow position: chr16:19713640-19713352 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 0

Conread position: 449-736
Cow position: chr16:53045603-53045891 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 180
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 109, 164

Conread position: 450-825
Cow position: chr16:6966981-6967355 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 236
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 90, 67

Conread position: 497-813
Cow position: chr16:49235848-49235526 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 34

Conread position: 504-813
Cow position: chr16:18500046-18499729 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 62

Conread position: 512-723
Cow position: chr16:41758134-41757924 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 149
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 97, 0

Conread position: 532-736
Cow position: chr16:31831964-31832169 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 122
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 92, 80

Conread position: 561-732
Cow position: chr16:23670265-23670099 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 122
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 113, 0

Conread position: 561-813
Cow position: chr16:52815125-52814867 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 187
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 61, 51

Conread position: 576-813
Cow position: chr16:29033094-29033340 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 195
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 45, 36

Show alignments to all cow chromosomes.