Cow genome map


           Conread name:
           Ss1.1-rspc011_k9.5
        

               Conread position:
               69-488
               

               Cow position:
               
               

               Alignm length:
               442
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 9
               

               Conread position:
               69-732
               

               Cow position:
               
               

               Alignm length:
               686
               

               Alignm identity:
               486
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 28
               

               Conread position:
               73-736
               

               Cow position:
               
               

               Alignm length:
               700
               

               Alignm identity:
               501
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               76-736
               

               Cow position:
               
               

               Alignm length:
               692
               

               Alignm identity:
               483
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 51
               

               Conread position:
               78-570
               

               Cow position:
               
               

               Alignm length:
               507
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               145, 72
               

               Conread position:
               78-797
               

               Cow position:
               
               

               Alignm length:
               754
               

               Alignm identity:
               498
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 36
               

               Conread position:
               78-813
               

               Cow position:
               
               

               Alignm length:
               787
               

               Alignm identity:
               552
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 298
               

               Conread position:
               78-815
               

               Cow position:
               
               

               Alignm length:
               754
               

               Alignm identity:
               530
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 143
               

               Conread position:
               80-340
               

               Cow position:
               
               

               Alignm length:
               276
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               146, 26
               

               Conread position:
               81-736
               

               Cow position:
               
               

               Alignm length:
               690
               

               Alignm identity:
               501
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 344
               

               Conread position:
               81-813
               

               Cow position:
               
               

               Alignm length:
               757
               

               Alignm identity:
               508
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               139, 10
               

               Conread position:
               84-314
               

               Cow position:
               
               

               Alignm length:
               235
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               137, 66
               

               Conread position:
               84-736
               

               Cow position:
               
               

               Alignm length:
               675
               

               Alignm identity:
               491
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 35
               

               Conread position:
               84-736
               

               Cow position:
               
               

               Alignm length:
               672
               

               Alignm identity:
               487
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               142, 66
               

               Conread position:
               87-815
               

               Cow position:
               
               

               Alignm length:
               749
               

               Alignm identity:
               494
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               219, 94
               

               Conread position:
               88-536
               

               Cow position:
               
               

               Alignm length:
               466
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               212, 24
               

               Conread position:
               110-729
               

               Cow position:
               
               

               Alignm length:
               656
               

               Alignm identity:
               451
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 124
               

               Conread position:
               148-736
               

               Cow position:
               
               

               Alignm length:
               605
               

               Alignm identity:
               446
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               148-736
               

               Cow position:
               
               

               Alignm length:
               605
               

               Alignm identity:
               424
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 181
               

               Conread position:
               150-736
               

               Cow position:
               
               

               Alignm length:
               603
               

               Alignm identity:
               433
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 7
               

               Conread position:
               150-736
               

               Cow position:
               
               

               Alignm length:
               609
               

               Alignm identity:
               439
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 483
               

               Conread position:
               150-736
               

               Cow position:
               
               

               Alignm length:
               610
               

               Alignm identity:
               440
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 56
               

               Conread position:
               151-475
               

               Cow position:
               
               

               Alignm length:
               344
               

               Alignm identity:
               204
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               151-490
               

               Cow position:
               
               

               Alignm length:
               355
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 75
               

               Conread position:
               151-598
               

               Cow position:
               
               

               Alignm length:
               459
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 192
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               600
               

               Alignm identity:
               442
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               602
               

               Alignm identity:
               435
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 52
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               604
               

               Alignm identity:
               438
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 561
               

               Conread position:
               152-736
               

               Cow position:
               
               

               Alignm length:
               610
               

               Alignm identity:
               434
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 149
               

               Conread position:
               152-736
               

               Cow position:
               
               

               Alignm length:
               600
               

               Alignm identity:
               419
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 474
               

               Conread position:
               154-721
               

               Cow position:
               
               

               Alignm length:
               584
               

               Alignm identity:
               424
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 89
               

               Conread position:
               154-736
               

               Cow position:
               
               

               Alignm length:
               599
               

               Alignm identity:
               443
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 61
               

               Conread position:
               154-813
               

               Cow position:
               
               

               Alignm length:
               689
               

               Alignm identity:
               507
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 257
               

               Conread position:
               157-372
               

               Cow position:
               
               

               Alignm length:
               221
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               157-736
               

               Cow position:
               
               

               Alignm length:
               600
               

               Alignm identity:
               434
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 94
               

               Conread position:
               158-736
               

               Cow position:
               
               

               Alignm length:
               599
               

               Alignm identity:
               419
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 76
               

               Conread position:
               158-787
               

               Cow position:
               
               

               Alignm length:
               662
               

               Alignm identity:
               460
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 44
               

               Conread position:
               163-728
               

               Cow position:
               
               

               Alignm length:
               583
               

               Alignm identity:
               430
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 317
               

               Conread position:
               164-646
               

               Cow position:
               
               

               Alignm length:
               502
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 463
               

               Conread position:
               164-682
               

               Cow position:
               
               

               Alignm length:
               538
               

               Alignm identity:
               391
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 463
               

               Conread position:
               164-732
               

               Cow position:
               
               

               Alignm length:
               584
               

               Alignm identity:
               425
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 381
               

               Conread position:
               164-732
               

               Cow position:
               
               

               Alignm length:
               581
               

               Alignm identity:
               421
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 79
               

               Conread position:
               164-736
               

               Cow position:
               
               

               Alignm length:
               589
               

               Alignm identity:
               430
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 463
               

               Conread position:
               164-736
               

               Cow position:
               
               

               Alignm length:
               592
               

               Alignm identity:
               420
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 320
               

               Conread position:
               164-736
               

               Cow position:
               
               

               Alignm length:
               592
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 466
               

               Conread position:
               164-736
               

               Cow position:
               
               

               Alignm length:
               585
               

               Alignm identity:
               429
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 459
               

               Conread position:
               164-736
               

               Cow position:
               
               

               Alignm length:
               592
               

               Alignm identity:
               423
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               164-736
               

               Cow position:
               
               

               Alignm length:
               588
               

               Alignm identity:
               425
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 459
               

               Conread position:
               165-439
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               208
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               167-704
               

               Cow position:
               
               

               Alignm length:
               553
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 51
               

               Conread position:
               168-736
               

               Cow position:
               
               

               Alignm length:
               590
               

               Alignm identity:
               418
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 18
               

               Conread position:
               170-736
               

               Cow position:
               
               

               Alignm length:
               588
               

               Alignm identity:
               414
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 437
               

               Conread position:
               219-730
               

               Cow position:
               
               

               Alignm length:
               522
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 233
               

               Conread position:
               219-736
               

               Cow position:
               
               

               Alignm length:
               535
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 391
               

               Conread position:
               219-736
               

               Cow position:
               
               

               Alignm length:
               532
               

               Alignm identity:
               385
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 388
               

               Conread position:
               224-732
               

               Cow position:
               
               

               Alignm length:
               524
               

               Alignm identity:
               400
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 185
               

               Conread position:
               228-813
               

               Cow position:
               
               

               Alignm length:
               612
               

               Alignm identity:
               412
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 137
               

               Conread position:
               233-813
               

               Cow position:
               
               

               Alignm length:
               606
               

               Alignm identity:
               393
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               214, 141
               

               Conread position:
               249-730
               

               Cow position:
               
               

               Alignm length:
               495
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 191
               

               Conread position:
               250-736
               

               Cow position:
               
               

               Alignm length:
               503
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 231
               

               Conread position:
               250-736
               

               Cow position:
               
               

               Alignm length:
               493
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 125
               

               Conread position:
               297-735
               

               Cow position:
               
               

               Alignm length:
               442
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 115
               

               Conread position:
               300-634
               

               Cow position:
               
               

               Alignm length:
               336
               

               Alignm identity:
               217
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               198, 59
               

               Conread position:
               301-730
               

               Cow position:
               
               

               Alignm length:
               432
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               139, 93
               

               Conread position:
               301-736
               

               Cow position:
               
               

               Alignm length:
               438
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 385
               

               Conread position:
               301-736
               

               Cow position:
               
               

               Alignm length:
               438
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 114
               

               Conread position:
               303-740
               

               Cow position:
               
               

               Alignm length:
               442
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 35
               

               Conread position:
               303-740
               

               Cow position:
               
               

               Alignm length:
               443
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 145
               

               Conread position:
               305-663
               

               Cow position:
               
               

               Alignm length:
               360
               

               Alignm identity:
               234
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               199, 121
               

               Conread position:
               353-736
               

               Cow position:
               
               

               Alignm length:
               387
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 261
               

               Conread position:
               364-761
               

               Cow position:
               
               

               Alignm length:
               401
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 247
               

               Conread position:
               398-648
               

               Cow position:
               
               

               Alignm length:
               254
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               53, 109
               

               Conread position:
               447-736
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               209
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               449-736
               

               Cow position:
               
               

               Alignm length:
               289
               

               Alignm identity:
               181
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               172, 163
               

               Conread position:
               468-798
               

               Cow position:
               
               

               Alignm length:
               333
               

               Alignm identity:
               228
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               21, 110
               

               Conread position:
               495-732
               

               Cow position:
               
               

               Alignm length:
               238
               

               Alignm identity:
               180
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               522-736
               

               Cow position:
               
               

               Alignm length:
               215
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               540-718
               

               Cow position:
               
               

               Alignm length:
               180
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               81, 72
               

               Conread position:
               553-736
               

               Cow position:
               
               

               Alignm length:
               184
               

               Alignm identity:
               145
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               590-732
               

               Cow position:
               
               

               Alignm length:
               143
               

               Alignm identity:
               110
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               590-736
               

               Cow position:
               
               

               Alignm length:
               148
               

               Alignm identity:
               113
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               31, 22
               

               Conread position:
               591-736
               

               Cow position:
               
               

               Alignm length:
               147
               

               Alignm identity:
               113
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               30, 21
               

               Conread position:
               593-813
               

               Cow position:
               
               

               Alignm length:
               225
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               8, 78
               

               Conread position:
               604-735
               

               Cow position:
               
               

               Alignm length:
               133
               

               Alignm identity:
               113
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               611-736
               

               Cow position:
               
               

               Alignm length:
               127
               

               Alignm identity:
               103
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               632-736
               

               Cow position:
               
               

               Alignm length:
               105
               

               Alignm identity:
               86
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               0, 0
               
Show alignments to all cow chromosomes.