Cow genome map
| Conread name: | Ss1.1-rspc011_k9.5 |
| Conread position: | 69-488 |
| Cow position: | chr17:2578990-2579425 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 9 |
| Conread position: | 69-732 |
| Cow position: | chr17:3643402-3642725 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 73-736 |
| Cow position: | chr17:25737079-25737778 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 76-736 |
| Cow position: | chr17:13857344-13856654 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 51 |
| Conread position: | 78-570 |
| Cow position: | chr17:1284313-1283841 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 72 |
| Conread position: | 78-797 |
| Cow position: | chr17:2146643-2147358 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 36 |
| Conread position: | 78-813 |
| Cow position: | chr17:4081073-4081837 (view UCSC Genome Browser custom track) |
| Alignm length: | 787 |
| Alignm identity: | 552 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 298 |
| Conread position: | 78-815 |
| Cow position: | chr17:4294819-4295546 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 143 |
| Conread position: | 80-340 |
| Cow position: | chr17:32024748-32024479 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 146, 26 |
| Conread position: | 81-736 |
| Cow position: | chr17:23857605-23856919 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 344 |
| Conread position: | 81-813 |
| Cow position: | chr17:15370529-15371249 (view UCSC Genome Browser custom track) |
| Alignm length: | 757 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 10 |
| Conread position: | 84-314 |
| Cow position: | chr17:2286826-2287056 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 137, 66 |
| Conread position: | 84-736 |
| Cow position: | chr17:16889580-16890239 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 35 |
| Conread position: | 84-736 |
| Cow position: | chr17:27345257-27345913 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 66 |
| Conread position: | 87-815 |
| Cow position: | chr17:42263988-42264703 (view UCSC Genome Browser custom track) |
| Alignm length: | 749 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 94 |
| Conread position: | 88-536 |
| Cow position: | chr17:28109550-28110002 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 24 |
| Conread position: | 110-729 |
| Cow position: | chr17:249398-250047 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 124 |
| Conread position: | 148-736 |
| Cow position: | chr17:19269855-19269251 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 148-736 |
| Cow position: | chr17:44853419-44852818 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 181 |
| Conread position: | 150-736 |
| Cow position: | chr17:228781-228193 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 7 |
| Conread position: | 150-736 |
| Cow position: | chr17:20666218-20665611 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 483 |
| Conread position: | 150-736 |
| Cow position: | chr17:24633465-24634069 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 56 |
| Conread position: | 151-475 |
| Cow position: | chr17:11782880-11783223 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 151-490 |
| Cow position: | chr17:40803918-40804262 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 75 |
| Conread position: | 151-598 |
| Cow position: | chr17:15322343-15322786 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 192 |
| Conread position: | 151-736 |
| Cow position: | chr17:11088208-11087609 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 151-736 |
| Cow position: | chr17:13929186-13929783 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 52 |
| Conread position: | 151-736 |
| Cow position: | chr17:18104168-18103570 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 561 |
| Conread position: | 152-736 |
| Cow position: | chr17:14893668-14894268 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 149 |
| Conread position: | 152-736 |
| Cow position: | chr17:15143850-15143252 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 474 |
| Conread position: | 154-721 |
| Cow position: | chr17:2261632-2262206 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 89 |
| Conread position: | 154-736 |
| Cow position: | chr17:35591739-35592329 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 61 |
| Conread position: | 154-813 |
| Cow position: | chr17:14325978-14325312 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 257 |
| Conread position: | 157-372 |
| Cow position: | chr17:19609379-19609159 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 157-736 |
| Cow position: | chr17:4059625-4060214 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 94 |
| Conread position: | 158-736 |
| Cow position: | chr17:2173401-2173993 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 76 |
| Conread position: | 158-787 |
| Cow position: | chr17:152937-152300 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 44 |
| Conread position: | 163-728 |
| Cow position: | chr17:22429957-22429387 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 317 |
| Conread position: | 164-646 |
| Cow position: | chr17:22160441-22160941 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 463 |
| Conread position: | 164-682 |
| Cow position: | chr17:24780573-24781109 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 463 |
| Conread position: | 164-732 |
| Cow position: | chr17:8208636-8209217 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 381 |
| Conread position: | 164-732 |
| Cow position: | chr17:15157427-15156853 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 79 |
| Conread position: | 164-736 |
| Cow position: | chr17:1383286-1382699 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 463 |
| Conread position: | 164-736 |
| Cow position: | chr17:2249056-2248469 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 320 |
| Conread position: | 164-736 |
| Cow position: | chr17:6089636-6089046 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 466 |
| Conread position: | 164-736 |
| Cow position: | chr17:9653924-9653341 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 459 |
| Conread position: | 164-736 |
| Cow position: | chr17:14217499-14216908 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 164-736 |
| Cow position: | chr17:15435320-15435906 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 459 |
| Conread position: | 165-439 |
| Cow position: | chr17:2737905-2738194 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 208 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 167-704 |
| Cow position: | chr17:39933216-39933738 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 51 |
| Conread position: | 168-736 |
| Cow position: | chr17:15849930-15850512 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 18 |
| Conread position: | 170-736 |
| Cow position: | chr17:1879623-1880209 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 437 |
| Conread position: | 219-730 |
| Cow position: | chr17:4286680-4287187 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 233 |
| Conread position: | 219-736 |
| Cow position: | chr17:16859974-16859453 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 391 |
| Conread position: | 219-736 |
| Cow position: | chr17:43988122-43988648 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 388 |
| Conread position: | 224-732 |
| Cow position: | chr17:20183639-20183120 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 185 |
| Conread position: | 228-813 |
| Cow position: | chr17:20401275-20401861 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 137 |
| Conread position: | 233-813 |
| Cow position: | chr17:1658959-1658364 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 141 |
| Conread position: | 249-730 |
| Cow position: | chr17:18185910-18185426 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 191 |
| Conread position: | 250-736 |
| Cow position: | chr17:1946591-1947084 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 231 |
| Conread position: | 250-736 |
| Cow position: | chr17:23324826-23324339 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 125 |
| Conread position: | 297-735 |
| Cow position: | chr17:2287063-2287500 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 115 |
| Conread position: | 300-634 |
| Cow position: | chr17:4671873-4672201 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 198, 59 |
| Conread position: | 301-730 |
| Cow position: | chr17:22131912-22132337 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 93 |
| Conread position: | 301-736 |
| Cow position: | chr17:6259523-6259959 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 385 |
| Conread position: | 301-736 |
| Cow position: | chr17:20088052-20087632 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 114 |
| Conread position: | 303-740 |
| Cow position: | chr17:2588014-2588423 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 35 |
| Conread position: | 303-740 |
| Cow position: | chr17:6002332-6001898 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 145 |
| Conread position: | 305-663 |
| Cow position: | chr17:14308620-14308271 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 234 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 199, 121 |
| Conread position: | 353-736 |
| Cow position: | chr17:18027027-18026642 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 261 |
| Conread position: | 364-761 |
| Cow position: | chr17:2555864-2556262 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 247 |
| Conread position: | 398-648 |
| Cow position: | chr17:12670672-12670427 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 53, 109 |
| Conread position: | 447-736 |
| Cow position: | chr17:2579458-2579730 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 209 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 449-736 |
| Cow position: | chr17:181191-181478 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 163 |
| Conread position: | 468-798 |
| Cow position: | chr17:31199796-31199477 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 21, 110 |
| Conread position: | 495-732 |
| Cow position: | chr17:40804690-40804927 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 522-736 |
| Cow position: | chr17:602523-602323 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 540-718 |
| Cow position: | chr17:26205888-26205710 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 81, 72 |
| Conread position: | 553-736 |
| Cow position: | chr17:1283773-1283590 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 145 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 590-732 |
| Cow position: | chr17:15323215-15323356 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 590-736 |
| Cow position: | chr17:43952593-43952448 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 31, 22 |
| Conread position: | 591-736 |
| Cow position: | chr17:31768069-31767924 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 30, 21 |
| Conread position: | 593-813 |
| Cow position: | chr17:22557593-22557801 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 8, 78 |
| Conread position: | 604-735 |
| Cow position: | chr17:36987689-36987557 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 611-736 |
| Cow position: | chr17:34156117-34156243 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 632-736 |
| Cow position: | chr17:602694-602798 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 86 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.