Cow genome map

Conread name: Ss1.1-rspc011_k9.5

Conread position: 68-719
Cow position: chr18:54172223-54171558 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 161

Conread position: 69-736
Cow position: chr18:28974264-28973580 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 9

Conread position: 69-736
Cow position: chr18:36507974-36508655 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 28

Conread position: 69-813
Cow position: chr18:37599889-37599133 (view UCSC Genome Browser custom track)
Alignm length: 776
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 18

Conread position: 78-638
Cow position: chr18:16660367-16659793 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 328

Conread position: 78-695
Cow position: chr18:54024714-54024078 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 337

Conread position: 78-730
Cow position: chr18:43147274-43146609 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 53

Conread position: 78-736
Cow position: chr18:23944720-23944052 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 72

Conread position: 78-736
Cow position: chr18:33358516-33359188 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 72

Conread position: 78-736
Cow position: chr18:35335139-35335802 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 34

Conread position: 80-488
Cow position: chr18:29763123-29763530 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 235
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 87, 108

Conread position: 80-690
Cow position: chr18:16863735-16864338 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 377
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 212, 119

Conread position: 81-736
Cow position: chr18:48221532-48222201 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 69

Conread position: 85-717
Cow position: chr18:32293434-32294067 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 65

Conread position: 90-736
Cow position: chr18:47719906-47719261 (view UCSC Genome Browser custom track)
Alignm length: 667
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 29

Conread position: 91-472
Cow position: chr18:45958346-45958742 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 268
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 74, 152

Conread position: 97-735
Cow position: chr18:2020011-2019363 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 22

Conread position: 97-736
Cow position: chr18:1520798-1521468 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 52

Conread position: 99-730
Cow position: chr18:33268516-33269142 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 32

Conread position: 148-736
Cow position: chr18:27838587-27837994 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 284

Conread position: 149-736
Cow position: chr18:33953852-33953252 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 57

Conread position: 150-431
Cow position: chr18:37585947-37585648 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 211
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 14, 227

Conread position: 150-736
Cow position: chr18:22602203-22602810 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 56

Conread position: 150-736
Cow position: chr18:39748300-39748900 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 259

Conread position: 151-435
Cow position: chr18:25349759-25350059 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 216
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 68, 0

Conread position: 151-454
Cow position: chr18:32651716-32652036 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 229
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 68, 0

Conread position: 151-736
Cow position: chr18:14415699-14416298 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 558

Conread position: 151-736
Cow position: chr18:16176886-16176295 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 190

Conread position: 151-736
Cow position: chr18:23797371-23797970 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 195

Conread position: 151-736
Cow position: chr18:37504786-37505386 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 60

Conread position: 151-736
Cow position: chr18:40478105-40478705 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 345

Conread position: 151-736
Cow position: chr18:41841105-41840502 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 151-736
Cow position: chr18:51480560-51481162 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 152-732
Cow position: chr18:47741736-47742337 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 478

Conread position: 152-736
Cow position: chr18:11275370-11274783 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 50

Conread position: 154-435
Cow position: chr18:19540147-19539855 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 209
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 72, 32

Conread position: 154-537
Cow position: chr18:27986752-27987151 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 223

Conread position: 154-571
Cow position: chr18:44621480-44621917 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 291

Conread position: 154-577
Cow position: chr18:17992838-17992401 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 284

Conread position: 154-672
Cow position: chr18:18897235-18897754 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 342
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 103, 86

Conread position: 154-731
Cow position: chr18:33335595-33336180 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 472

Conread position: 154-736
Cow position: chr18:51257706-51258306 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 228

Conread position: 154-740
Cow position: chr18:9187039-9186447 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 47

Conread position: 156-740
Cow position: chr18:46878246-46877681 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 393
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 51, 45

Conread position: 157-722
Cow position: chr18:44601269-44601828 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 368
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 50, 42

Conread position: 159-736
Cow position: chr18:51310315-51310906 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 55

Conread position: 164-732
Cow position: chr18:51660157-51660736 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 235
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 136, 79

Conread position: 164-736
Cow position: chr18:16078436-16079040 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 477

Conread position: 164-736
Cow position: chr18:55089192-55088602 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 466

Conread position: 175-435
Cow position: chr18:51464727-51464457 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 190
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 28, 195

Conread position: 175-435
Cow position: chr18:51610750-51611009 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 186
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 28, 136

Conread position: 219-660
Cow position: chr18:43200857-43201301 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 162

Conread position: 219-713
Cow position: chr18:16393849-16393347 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 242

Conread position: 219-736
Cow position: chr18:6869465-6868936 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 267

Conread position: 219-736
Cow position: chr18:16533776-16534301 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 252

Conread position: 223-736
Cow position: chr18:19352185-19352708 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 20

Conread position: 232-426
Cow position: chr18:54269275-54269477 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 140
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 66, 0

Conread position: 239-740
Cow position: chr18:16877298-16877796 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 120

Conread position: 250-722
Cow position: chr18:53785664-53786148 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 156

Conread position: 250-736
Cow position: chr18:51689450-51689947 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 239

Conread position: 299-813
Cow position: chr18:29236702-29237218 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 52

Conread position: 301-459
Cow position: chr18:22869641-22869801 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 131
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 15, 11

Conread position: 301-736
Cow position: chr18:51341572-51342009 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 310

Conread position: 301-813
Cow position: chr18:2887136-2886611 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 314

Conread position: 302-721
Cow position: chr18:29048688-29048258 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 264
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 35, 70

Conread position: 303-585
Cow position: chr18:35288420-35288710 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 202
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 119, 59

Conread position: 303-735
Cow position: chr18:54044813-54044401 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 93

Conread position: 344-740
Cow position: chr18:5980372-5980757 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 254
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 56, 7

Conread position: 347-736
Cow position: chr18:14130322-14130707 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 8

Conread position: 374-736
Cow position: chr18:52650890-52651242 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 70

Conread position: 385-735
Cow position: chr18:114364-114711 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 100

Conread position: 424-682
Cow position: chr18:25350673-25350934 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 183
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 22, 0

Conread position: 427-736
Cow position: chr18:24040721-24040409 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 187

Conread position: 431-736
Cow position: chr18:51463059-51462756 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 111

Conread position: 435-736
Cow position: chr18:19539558-19539262 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 177

Conread position: 444-693
Cow position: chr18:32652251-32652499 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 181
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 46, 0

Conread position: 445-824
Cow position: chr18:54269618-54269998 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 262
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 43, 11

Conread position: 466-824
Cow position: chr18:36258310-36257935 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 248
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 66, 51

Conread position: 468-708
Cow position: chr18:16722688-16722445 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 164
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 46, 30

Conread position: 470-732
Cow position: chr18:36211062-36210800 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 172
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 13, 47

Conread position: 481-813
Cow position: chr18:16843268-16842931 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 70

Conread position: 494-717
Cow position: chr18:18089392-18089172 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 165
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 207, 0

Conread position: 510-708
Cow position: chr18:19407279-19407078 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 137
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 86, 0

Conread position: 514-736
Cow position: chr18:54003618-54003843 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 175
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 100, 26

Conread position: 531-813
Cow position: chr18:29763490-29763773 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 207
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 14, 56

Conread position: 538-719
Cow position: chr18:27987185-27987366 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 139
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 562-736
Cow position: chr18:17992272-17992098 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 146
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 59, 50

Conread position: 566-748
Cow position: chr18:45958871-45959051 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 141
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 46, 0

Conread position: 605-811
Cow position: chr18:56462712-56462501 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 168
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 16, 148

Show alignments to all cow chromosomes.