Cow genome map


           Conread name:
           Ss1.1-rspc011_k9.5
        

               Conread position:
               68-719
               

               Cow position:
               
               

               Alignm length:
               689
               

               Alignm identity:
               492
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 161
               

               Conread position:
               69-736
               

               Cow position:
               
               

               Alignm length:
               691
               

               Alignm identity:
               500
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 9
               

               Conread position:
               69-736
               

               Cow position:
               
               

               Alignm length:
               690
               

               Alignm identity:
               492
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 28
               

               Conread position:
               69-813
               

               Cow position:
               
               

               Alignm length:
               776
               

               Alignm identity:
               517
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 18
               

               Conread position:
               78-638
               

               Cow position:
               
               

               Alignm length:
               589
               

               Alignm identity:
               420
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 328
               

               Conread position:
               78-695
               

               Cow position:
               
               

               Alignm length:
               648
               

               Alignm identity:
               452
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 337
               

               Conread position:
               78-730
               

               Cow position:
               
               

               Alignm length:
               673
               

               Alignm identity:
               502
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 53
               

               Conread position:
               78-736
               

               Cow position:
               
               

               Alignm length:
               676
               

               Alignm identity:
               506
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 72
               

               Conread position:
               78-736
               

               Cow position:
               
               

               Alignm length:
               678
               

               Alignm identity:
               506
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 72
               

               Conread position:
               78-736
               

               Cow position:
               
               

               Alignm length:
               679
               

               Alignm identity:
               494
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 34
               

               Conread position:
               80-488
               

               Cow position:
               
               

               Alignm length:
               414
               

               Alignm identity:
               235
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               87, 108
               

               Conread position:
               80-690
               

               Cow position:
               
               

               Alignm length:
               622
               

               Alignm identity:
               377
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               212, 119
               

               Conread position:
               81-736
               

               Cow position:
               
               

               Alignm length:
               678
               

               Alignm identity:
               508
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 69
               

               Conread position:
               85-717
               

               Cow position:
               
               

               Alignm length:
               650
               

               Alignm identity:
               466
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 65
               

               Conread position:
               90-736
               

               Cow position:
               
               

               Alignm length:
               667
               

               Alignm identity:
               488
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 29
               

               Conread position:
               91-472
               

               Cow position:
               
               

               Alignm length:
               403
               

               Alignm identity:
               268
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               74, 152
               

               Conread position:
               97-735
               

               Cow position:
               
               

               Alignm length:
               652
               

               Alignm identity:
               488
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 22
               

               Conread position:
               97-736
               

               Cow position:
               
               

               Alignm length:
               677
               

               Alignm identity:
               486
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 52
               

               Conread position:
               99-730
               

               Cow position:
               
               

               Alignm length:
               650
               

               Alignm identity:
               473
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 32
               

               Conread position:
               148-736
               

               Cow position:
               
               

               Alignm length:
               607
               

               Alignm identity:
               426
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 284
               

               Conread position:
               149-736
               

               Cow position:
               
               

               Alignm length:
               612
               

               Alignm identity:
               439
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 57
               

               Conread position:
               150-431
               

               Cow position:
               
               

               Alignm length:
               301
               

               Alignm identity:
               211
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               14, 227
               

               Conread position:
               150-736
               

               Cow position:
               
               

               Alignm length:
               610
               

               Alignm identity:
               441
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 56
               

               Conread position:
               150-736
               

               Cow position:
               
               

               Alignm length:
               605
               

               Alignm identity:
               459
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 259
               

               Conread position:
               151-435
               

               Cow position:
               
               

               Alignm length:
               301
               

               Alignm identity:
               216
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               151-454
               

               Cow position:
               
               

               Alignm length:
               321
               

               Alignm identity:
               229
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               601
               

               Alignm identity:
               445
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 558
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               606
               

               Alignm identity:
               423
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 190
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               604
               

               Alignm identity:
               441
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 195
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               603
               

               Alignm identity:
               437
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 60
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               606
               

               Alignm identity:
               426
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 345
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               604
               

               Alignm identity:
               447
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               603
               

               Alignm identity:
               441
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               152-732
               

               Cow position:
               
               

               Alignm length:
               603
               

               Alignm identity:
               434
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 478
               

               Conread position:
               152-736
               

               Cow position:
               
               

               Alignm length:
               597
               

               Alignm identity:
               427
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 50
               

               Conread position:
               154-435
               

               Cow position:
               
               

               Alignm length:
               300
               

               Alignm identity:
               209
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               72, 32
               

               Conread position:
               154-537
               

               Cow position:
               
               

               Alignm length:
               401
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 223
               

               Conread position:
               154-571
               

               Cow position:
               
               

               Alignm length:
               439
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 291
               

               Conread position:
               154-577
               

               Cow position:
               
               

               Alignm length:
               441
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 284
               

               Conread position:
               154-672
               

               Cow position:
               
               

               Alignm length:
               537
               

               Alignm identity:
               342
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               103, 86
               

               Conread position:
               154-731
               

               Cow position:
               
               

               Alignm length:
               591
               

               Alignm identity:
               450
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 472
               

               Conread position:
               154-736
               

               Cow position:
               
               

               Alignm length:
               608
               

               Alignm identity:
               466
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 228
               

               Conread position:
               154-740
               

               Cow position:
               
               

               Alignm length:
               604
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 47
               

               Conread position:
               156-740
               

               Cow position:
               
               

               Alignm length:
               605
               

               Alignm identity:
               393
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               51, 45
               

               Conread position:
               157-722
               

               Cow position:
               
               

               Alignm length:
               582
               

               Alignm identity:
               368
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               50, 42
               

               Conread position:
               159-736
               

               Cow position:
               
               

               Alignm length:
               600
               

               Alignm identity:
               441
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 55
               

               Conread position:
               164-732
               

               Cow position:
               
               

               Alignm length:
               584
               

               Alignm identity:
               235
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               136, 79
               

               Conread position:
               164-736
               

               Cow position:
               
               

               Alignm length:
               606
               

               Alignm identity:
               434
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 477
               

               Conread position:
               164-736
               

               Cow position:
               
               

               Alignm length:
               592
               

               Alignm identity:
               427
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 466
               

               Conread position:
               175-435
               

               Cow position:
               
               

               Alignm length:
               273
               

               Alignm identity:
               190
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               28, 195
               

               Conread position:
               175-435
               

               Cow position:
               
               

               Alignm length:
               265
               

               Alignm identity:
               186
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               28, 136
               

               Conread position:
               219-660
               

               Cow position:
               
               

               Alignm length:
               455
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 162
               

               Conread position:
               219-713
               

               Cow position:
               
               

               Alignm length:
               511
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 242
               

               Conread position:
               219-736
               

               Cow position:
               
               

               Alignm length:
               533
               

               Alignm identity:
               408
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 267
               

               Conread position:
               219-736
               

               Cow position:
               
               

               Alignm length:
               528
               

               Alignm identity:
               392
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 252
               

               Conread position:
               223-736
               

               Cow position:
               
               

               Alignm length:
               529
               

               Alignm identity:
               401
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 20
               

               Conread position:
               232-426
               

               Cow position:
               
               

               Alignm length:
               203
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               239-740
               

               Cow position:
               
               

               Alignm length:
               511
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 120
               

               Conread position:
               250-722
               

               Cow position:
               
               

               Alignm length:
               488
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 156
               

               Conread position:
               250-736
               

               Cow position:
               
               

               Alignm length:
               501
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 239
               

               Conread position:
               299-813
               

               Cow position:
               
               

               Alignm length:
               528
               

               Alignm identity:
               403
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 52
               

               Conread position:
               301-459
               

               Cow position:
               
               

               Alignm length:
               162
               

               Alignm identity:
               131
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               15, 11
               

               Conread position:
               301-736
               

               Cow position:
               
               

               Alignm length:
               440
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 310
               

               Conread position:
               301-813
               

               Cow position:
               
               

               Alignm length:
               529
               

               Alignm identity:
               398
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 314
               

               Conread position:
               302-721
               

               Cow position:
               
               

               Alignm length:
               434
               

               Alignm identity:
               264
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               35, 70
               

               Conread position:
               303-585
               

               Cow position:
               
               

               Alignm length:
               293
               

               Alignm identity:
               202
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               119, 59
               

               Conread position:
               303-735
               

               Cow position:
               
               

               Alignm length:
               435
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 93
               

               Conread position:
               344-740
               

               Cow position:
               
               

               Alignm length:
               399
               

               Alignm identity:
               254
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               56, 7
               

               Conread position:
               347-736
               

               Cow position:
               
               

               Alignm length:
               392
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 8
               

               Conread position:
               374-736
               

               Cow position:
               
               

               Alignm length:
               364
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               247, 70
               

               Conread position:
               385-735
               

               Cow position:
               
               

               Alignm length:
               353
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 100
               

               Conread position:
               424-682
               

               Cow position:
               
               

               Alignm length:
               262
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               427-736
               

               Cow position:
               
               

               Alignm length:
               314
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 187
               

               Conread position:
               431-736
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 111
               

               Conread position:
               435-736
               

               Cow position:
               
               

               Alignm length:
               303
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               187, 177
               

               Conread position:
               444-693
               

               Cow position:
               
               

               Alignm length:
               250
               

               Alignm identity:
               181
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               445-824
               

               Cow position:
               
               

               Alignm length:
               394
               

               Alignm identity:
               262
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               43, 11
               

               Conread position:
               466-824
               

               Cow position:
               
               

               Alignm length:
               380
               

               Alignm identity:
               248
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               66, 51
               

               Conread position:
               468-708
               

               Cow position:
               
               

               Alignm length:
               247
               

               Alignm identity:
               164
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               46, 30
               

               Conread position:
               470-732
               

               Cow position:
               
               

               Alignm length:
               266
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               13, 47
               

               Conread position:
               481-813
               

               Cow position:
               
               

               Alignm length:
               343
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               258, 70
               

               Conread position:
               494-717
               

               Cow position:
               
               

               Alignm length:
               224
               

               Alignm identity:
               165
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               207, 0
               

               Conread position:
               510-708
               

               Cow position:
               
               

               Alignm length:
               202
               

               Alignm identity:
               137
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               514-736
               

               Cow position:
               
               

               Alignm length:
               232
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               100, 26
               

               Conread position:
               531-813
               

               Cow position:
               
               

               Alignm length:
               295
               

               Alignm identity:
               207
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               14, 56
               

               Conread position:
               538-719
               

               Cow position:
               
               

               Alignm length:
               182
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               562-736
               

               Cow position:
               
               

               Alignm length:
               176
               

               Alignm identity:
               146
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               59, 50
               

               Conread position:
               566-748
               

               Cow position:
               
               

               Alignm length:
               183
               

               Alignm identity:
               141
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               605-811
               

               Cow position:
               
               

               Alignm length:
               214
               

               Alignm identity:
               168
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               16, 148
               
Show alignments to all cow chromosomes.