Cow genome map
Conread name: | Ss1.1-rspc011_k9.5 |
Conread position: | 68-719 |
Cow position: | chr18:54172223-54171558 (view UCSC Genome Browser custom track) |
Alignm length: | 689 |
Alignm identity: | 492 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 61, 161 |
Conread position: | 69-736 |
Cow position: | chr18:28974264-28973580 (view UCSC Genome Browser custom track) |
Alignm length: | 691 |
Alignm identity: | 500 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 9 |
Conread position: | 69-736 |
Cow position: | chr18:36507974-36508655 (view UCSC Genome Browser custom track) |
Alignm length: | 690 |
Alignm identity: | 492 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 28 |
Conread position: | 69-813 |
Cow position: | chr18:37599889-37599133 (view UCSC Genome Browser custom track) |
Alignm length: | 776 |
Alignm identity: | 517 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 18 |
Conread position: | 78-638 |
Cow position: | chr18:16660367-16659793 (view UCSC Genome Browser custom track) |
Alignm length: | 589 |
Alignm identity: | 420 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 59, 328 |
Conread position: | 78-695 |
Cow position: | chr18:54024714-54024078 (view UCSC Genome Browser custom track) |
Alignm length: | 648 |
Alignm identity: | 452 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 337 |
Conread position: | 78-730 |
Cow position: | chr18:43147274-43146609 (view UCSC Genome Browser custom track) |
Alignm length: | 673 |
Alignm identity: | 502 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 149, 53 |
Conread position: | 78-736 |
Cow position: | chr18:23944720-23944052 (view UCSC Genome Browser custom track) |
Alignm length: | 676 |
Alignm identity: | 506 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 148, 72 |
Conread position: | 78-736 |
Cow position: | chr18:33358516-33359188 (view UCSC Genome Browser custom track) |
Alignm length: | 678 |
Alignm identity: | 506 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 81, 72 |
Conread position: | 78-736 |
Cow position: | chr18:35335139-35335802 (view UCSC Genome Browser custom track) |
Alignm length: | 679 |
Alignm identity: | 494 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 146, 34 |
Conread position: | 80-488 |
Cow position: | chr18:29763123-29763530 (view UCSC Genome Browser custom track) |
Alignm length: | 414 |
Alignm identity: | 235 |
Alignm E-value: | 5e-32 |
Alignm gaps (pig, cow): | 87, 108 |
Conread position: | 80-690 |
Cow position: | chr18:16863735-16864338 (view UCSC Genome Browser custom track) |
Alignm length: | 622 |
Alignm identity: | 377 |
Alignm E-value: | 5e-32 |
Alignm gaps (pig, cow): | 212, 119 |
Conread position: | 81-736 |
Cow position: | chr18:48221532-48222201 (view UCSC Genome Browser custom track) |
Alignm length: | 678 |
Alignm identity: | 508 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 69 |
Conread position: | 85-717 |
Cow position: | chr18:32293434-32294067 (view UCSC Genome Browser custom track) |
Alignm length: | 650 |
Alignm identity: | 466 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 65 |
Conread position: | 90-736 |
Cow position: | chr18:47719906-47719261 (view UCSC Genome Browser custom track) |
Alignm length: | 667 |
Alignm identity: | 488 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 29 |
Conread position: | 91-472 |
Cow position: | chr18:45958346-45958742 (view UCSC Genome Browser custom track) |
Alignm length: | 403 |
Alignm identity: | 268 |
Alignm E-value: | 8e-36 |
Alignm gaps (pig, cow): | 74, 152 |
Conread position: | 97-735 |
Cow position: | chr18:2020011-2019363 (view UCSC Genome Browser custom track) |
Alignm length: | 652 |
Alignm identity: | 488 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 62, 22 |
Conread position: | 97-736 |
Cow position: | chr18:1520798-1521468 (view UCSC Genome Browser custom track) |
Alignm length: | 677 |
Alignm identity: | 486 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 128, 52 |
Conread position: | 99-730 |
Cow position: | chr18:33268516-33269142 (view UCSC Genome Browser custom track) |
Alignm length: | 650 |
Alignm identity: | 473 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 126, 32 |
Conread position: | 148-736 |
Cow position: | chr18:27838587-27837994 (view UCSC Genome Browser custom track) |
Alignm length: | 607 |
Alignm identity: | 426 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 284 |
Conread position: | 149-736 |
Cow position: | chr18:33953852-33953252 (view UCSC Genome Browser custom track) |
Alignm length: | 612 |
Alignm identity: | 439 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 57 |
Conread position: | 150-431 |
Cow position: | chr18:37585947-37585648 (view UCSC Genome Browser custom track) |
Alignm length: | 301 |
Alignm identity: | 211 |
Alignm E-value: | 7e-34 |
Alignm gaps (pig, cow): | 14, 227 |
Conread position: | 150-736 |
Cow position: | chr18:22602203-22602810 (view UCSC Genome Browser custom track) |
Alignm length: | 610 |
Alignm identity: | 441 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 56 |
Conread position: | 150-736 |
Cow position: | chr18:39748300-39748900 (view UCSC Genome Browser custom track) |
Alignm length: | 605 |
Alignm identity: | 459 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 5, 259 |
Conread position: | 151-435 |
Cow position: | chr18:25349759-25350059 (view UCSC Genome Browser custom track) |
Alignm length: | 301 |
Alignm identity: | 216 |
Alignm E-value: | 2.00386e-43 |
Alignm gaps (pig, cow): | 68, 0 |
Conread position: | 151-454 |
Cow position: | chr18:32651716-32652036 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 229 |
Alignm E-value: | 2.00386e-43 |
Alignm gaps (pig, cow): | 68, 0 |
Conread position: | 151-736 |
Cow position: | chr18:14415699-14416298 (view UCSC Genome Browser custom track) |
Alignm length: | 601 |
Alignm identity: | 445 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 558 |
Conread position: | 151-736 |
Cow position: | chr18:16176886-16176295 (view UCSC Genome Browser custom track) |
Alignm length: | 606 |
Alignm identity: | 423 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 190 |
Conread position: | 151-736 |
Cow position: | chr18:23797371-23797970 (view UCSC Genome Browser custom track) |
Alignm length: | 604 |
Alignm identity: | 441 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 195 |
Conread position: | 151-736 |
Cow position: | chr18:37504786-37505386 (view UCSC Genome Browser custom track) |
Alignm length: | 603 |
Alignm identity: | 437 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 60 |
Conread position: | 151-736 |
Cow position: | chr18:40478105-40478705 (view UCSC Genome Browser custom track) |
Alignm length: | 606 |
Alignm identity: | 426 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 35, 345 |
Conread position: | 151-736 |
Cow position: | chr18:41841105-41840502 (view UCSC Genome Browser custom track) |
Alignm length: | 604 |
Alignm identity: | 447 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 0 |
Conread position: | 151-736 |
Cow position: | chr18:51480560-51481162 (view UCSC Genome Browser custom track) |
Alignm length: | 603 |
Alignm identity: | 441 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 0 |
Conread position: | 152-732 |
Cow position: | chr18:47741736-47742337 (view UCSC Genome Browser custom track) |
Alignm length: | 603 |
Alignm identity: | 434 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 12, 478 |
Conread position: | 152-736 |
Cow position: | chr18:11275370-11274783 (view UCSC Genome Browser custom track) |
Alignm length: | 597 |
Alignm identity: | 427 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 12, 50 |
Conread position: | 154-435 |
Cow position: | chr18:19540147-19539855 (view UCSC Genome Browser custom track) |
Alignm length: | 300 |
Alignm identity: | 209 |
Alignm E-value: | 4e-30 |
Alignm gaps (pig, cow): | 72, 32 |
Conread position: | 154-537 |
Cow position: | chr18:27986752-27987151 (view UCSC Genome Browser custom track) |
Alignm length: | 401 |
Alignm identity: | 291 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 223 |
Conread position: | 154-571 |
Cow position: | chr18:44621480-44621917 (view UCSC Genome Browser custom track) |
Alignm length: | 439 |
Alignm identity: | 312 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 291 |
Conread position: | 154-577 |
Cow position: | chr18:17992838-17992401 (view UCSC Genome Browser custom track) |
Alignm length: | 441 |
Alignm identity: | 311 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 72, 284 |
Conread position: | 154-672 |
Cow position: | chr18:18897235-18897754 (view UCSC Genome Browser custom track) |
Alignm length: | 537 |
Alignm identity: | 342 |
Alignm E-value: | 2e-35 |
Alignm gaps (pig, cow): | 103, 86 |
Conread position: | 154-731 |
Cow position: | chr18:33335595-33336180 (view UCSC Genome Browser custom track) |
Alignm length: | 591 |
Alignm identity: | 450 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 472 |
Conread position: | 154-736 |
Cow position: | chr18:51257706-51258306 (view UCSC Genome Browser custom track) |
Alignm length: | 608 |
Alignm identity: | 466 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 72, 228 |
Conread position: | 154-740 |
Cow position: | chr18:9187039-9186447 (view UCSC Genome Browser custom track) |
Alignm length: | 604 |
Alignm identity: | 386 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 47 |
Conread position: | 156-740 |
Cow position: | chr18:46878246-46877681 (view UCSC Genome Browser custom track) |
Alignm length: | 605 |
Alignm identity: | 393 |
Alignm E-value: | 3e-37 |
Alignm gaps (pig, cow): | 51, 45 |
Conread position: | 157-722 |
Cow position: | chr18:44601269-44601828 (view UCSC Genome Browser custom track) |
Alignm length: | 582 |
Alignm identity: | 368 |
Alignm E-value: | 2e-35 |
Alignm gaps (pig, cow): | 50, 42 |
Conread position: | 159-736 |
Cow position: | chr18:51310315-51310906 (view UCSC Genome Browser custom track) |
Alignm length: | 600 |
Alignm identity: | 441 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 75, 55 |
Conread position: | 164-732 |
Cow position: | chr18:51660157-51660736 (view UCSC Genome Browser custom track) |
Alignm length: | 584 |
Alignm identity: | 235 |
Alignm E-value: | 1.96182e-44 |
Alignm gaps (pig, cow): | 136, 79 |
Conread position: | 164-736 |
Cow position: | chr18:16078436-16079040 (view UCSC Genome Browser custom track) |
Alignm length: | 606 |
Alignm identity: | 434 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 39, 477 |
Conread position: | 164-736 |
Cow position: | chr18:55089192-55088602 (view UCSC Genome Browser custom track) |
Alignm length: | 592 |
Alignm identity: | 427 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 39, 466 |
Conread position: | 175-435 |
Cow position: | chr18:51464727-51464457 (view UCSC Genome Browser custom track) |
Alignm length: | 273 |
Alignm identity: | 190 |
Alignm E-value: | 5e-31 |
Alignm gaps (pig, cow): | 28, 195 |
Conread position: | 175-435 |
Cow position: | chr18:51610750-51611009 (view UCSC Genome Browser custom track) |
Alignm length: | 265 |
Alignm identity: | 186 |
Alignm E-value: | 7e-35 |
Alignm gaps (pig, cow): | 28, 136 |
Conread position: | 219-660 |
Cow position: | chr18:43200857-43201301 (view UCSC Genome Browser custom track) |
Alignm length: | 455 |
Alignm identity: | 331 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 162 |
Conread position: | 219-713 |
Cow position: | chr18:16393849-16393347 (view UCSC Genome Browser custom track) |
Alignm length: | 511 |
Alignm identity: | 335 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 79, 242 |
Conread position: | 219-736 |
Cow position: | chr18:6869465-6868936 (view UCSC Genome Browser custom track) |
Alignm length: | 533 |
Alignm identity: | 408 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 267 |
Conread position: | 219-736 |
Cow position: | chr18:16533776-16534301 (view UCSC Genome Browser custom track) |
Alignm length: | 528 |
Alignm identity: | 392 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 82, 252 |
Conread position: | 223-736 |
Cow position: | chr18:19352185-19352708 (view UCSC Genome Browser custom track) |
Alignm length: | 529 |
Alignm identity: | 401 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 72, 20 |
Conread position: | 232-426 |
Cow position: | chr18:54269275-54269477 (view UCSC Genome Browser custom track) |
Alignm length: | 203 |
Alignm identity: | 140 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 66, 0 |
Conread position: | 239-740 |
Cow position: | chr18:16877298-16877796 (view UCSC Genome Browser custom track) |
Alignm length: | 511 |
Alignm identity: | 333 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 67, 120 |
Conread position: | 250-722 |
Cow position: | chr18:53785664-53786148 (view UCSC Genome Browser custom track) |
Alignm length: | 488 |
Alignm identity: | 373 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 156 |
Conread position: | 250-736 |
Cow position: | chr18:51689450-51689947 (view UCSC Genome Browser custom track) |
Alignm length: | 501 |
Alignm identity: | 375 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 50, 239 |
Conread position: | 299-813 |
Cow position: | chr18:29236702-29237218 (view UCSC Genome Browser custom track) |
Alignm length: | 528 |
Alignm identity: | 403 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 146, 52 |
Conread position: | 301-459 |
Cow position: | chr18:22869641-22869801 (view UCSC Genome Browser custom track) |
Alignm length: | 162 |
Alignm identity: | 131 |
Alignm E-value: | 7e-35 |
Alignm gaps (pig, cow): | 15, 11 |
Conread position: | 301-736 |
Cow position: | chr18:51341572-51342009 (view UCSC Genome Browser custom track) |
Alignm length: | 440 |
Alignm identity: | 334 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 144, 310 |
Conread position: | 301-813 |
Cow position: | chr18:2887136-2886611 (view UCSC Genome Browser custom track) |
Alignm length: | 529 |
Alignm identity: | 398 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 314 |
Conread position: | 302-721 |
Cow position: | chr18:29048688-29048258 (view UCSC Genome Browser custom track) |
Alignm length: | 434 |
Alignm identity: | 264 |
Alignm E-value: | 6e-22 |
Alignm gaps (pig, cow): | 35, 70 |
Conread position: | 303-585 |
Cow position: | chr18:35288420-35288710 (view UCSC Genome Browser custom track) |
Alignm length: | 293 |
Alignm identity: | 202 |
Alignm E-value: | 7e-34 |
Alignm gaps (pig, cow): | 119, 59 |
Conread position: | 303-735 |
Cow position: | chr18:54044813-54044401 (view UCSC Genome Browser custom track) |
Alignm length: | 435 |
Alignm identity: | 329 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 136, 93 |
Conread position: | 344-740 |
Cow position: | chr18:5980372-5980757 (view UCSC Genome Browser custom track) |
Alignm length: | 399 |
Alignm identity: | 254 |
Alignm E-value: | 1e-29 |
Alignm gaps (pig, cow): | 56, 7 |
Conread position: | 347-736 |
Cow position: | chr18:14130322-14130707 (view UCSC Genome Browser custom track) |
Alignm length: | 392 |
Alignm identity: | 293 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 98, 8 |
Conread position: | 374-736 |
Cow position: | chr18:52650890-52651242 (view UCSC Genome Browser custom track) |
Alignm length: | 364 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 247, 70 |
Conread position: | 385-735 |
Cow position: | chr18:114364-114711 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 100 |
Conread position: | 424-682 |
Cow position: | chr18:25350673-25350934 (view UCSC Genome Browser custom track) |
Alignm length: | 262 |
Alignm identity: | 183 |
Alignm E-value: | 1e-37 |
Alignm gaps (pig, cow): | 22, 0 |
Conread position: | 427-736 |
Cow position: | chr18:24040721-24040409 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 237 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 187 |
Conread position: | 431-736 |
Cow position: | chr18:51463059-51462756 (view UCSC Genome Browser custom track) |
Alignm length: | 309 |
Alignm identity: | 225 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 111 |
Conread position: | 435-736 |
Cow position: | chr18:19539558-19539262 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 225 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 187, 177 |
Conread position: | 444-693 |
Cow position: | chr18:32652251-32652499 (view UCSC Genome Browser custom track) |
Alignm length: | 250 |
Alignm identity: | 181 |
Alignm E-value: | 5.99756e-43 |
Alignm gaps (pig, cow): | 46, 0 |
Conread position: | 445-824 |
Cow position: | chr18:54269618-54269998 (view UCSC Genome Browser custom track) |
Alignm length: | 394 |
Alignm identity: | 262 |
Alignm E-value: | 1e-30 |
Alignm gaps (pig, cow): | 43, 11 |
Conread position: | 466-824 |
Cow position: | chr18:36258310-36257935 (view UCSC Genome Browser custom track) |
Alignm length: | 380 |
Alignm identity: | 248 |
Alignm E-value: | 1e-27 |
Alignm gaps (pig, cow): | 66, 51 |
Conread position: | 468-708 |
Cow position: | chr18:16722688-16722445 (view UCSC Genome Browser custom track) |
Alignm length: | 247 |
Alignm identity: | 164 |
Alignm E-value: | 5e-21 |
Alignm gaps (pig, cow): | 46, 30 |
Conread position: | 470-732 |
Cow position: | chr18:36211062-36210800 (view UCSC Genome Browser custom track) |
Alignm length: | 266 |
Alignm identity: | 172 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 13, 47 |
Conread position: | 481-813 |
Cow position: | chr18:16843268-16842931 (view UCSC Genome Browser custom track) |
Alignm length: | 343 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 258, 70 |
Conread position: | 494-717 |
Cow position: | chr18:18089392-18089172 (view UCSC Genome Browser custom track) |
Alignm length: | 224 |
Alignm identity: | 165 |
Alignm E-value: | 4e-39 |
Alignm gaps (pig, cow): | 207, 0 |
Conread position: | 510-708 |
Cow position: | chr18:19407279-19407078 (view UCSC Genome Browser custom track) |
Alignm length: | 202 |
Alignm identity: | 137 |
Alignm E-value: | 6e-22 |
Alignm gaps (pig, cow): | 86, 0 |
Conread position: | 514-736 |
Cow position: | chr18:54003618-54003843 (view UCSC Genome Browser custom track) |
Alignm length: | 232 |
Alignm identity: | 175 |
Alignm E-value: | 3e-36 |
Alignm gaps (pig, cow): | 100, 26 |
Conread position: | 531-813 |
Cow position: | chr18:29763490-29763773 (view UCSC Genome Browser custom track) |
Alignm length: | 295 |
Alignm identity: | 207 |
Alignm E-value: | 5e-31 |
Alignm gaps (pig, cow): | 14, 56 |
Conread position: | 538-719 |
Cow position: | chr18:27987185-27987366 (view UCSC Genome Browser custom track) |
Alignm length: | 182 |
Alignm identity: | 139 |
Alignm E-value: | 3e-36 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 562-736 |
Cow position: | chr18:17992272-17992098 (view UCSC Genome Browser custom track) |
Alignm length: | 176 |
Alignm identity: | 146 |
Alignm E-value: | 6.02558e-44 |
Alignm gaps (pig, cow): | 59, 50 |
Conread position: | 566-748 |
Cow position: | chr18:45958871-45959051 (view UCSC Genome Browser custom track) |
Alignm length: | 183 |
Alignm identity: | 141 |
Alignm E-value: | 8e-36 |
Alignm gaps (pig, cow): | 46, 0 |
Conread position: | 605-811 |
Cow position: | chr18:56462712-56462501 (view UCSC Genome Browser custom track) |
Alignm length: | 214 |
Alignm identity: | 168 |
Alignm E-value: | 4.99983e-42 |
Alignm gaps (pig, cow): | 16, 148 |
Show alignments to all cow chromosomes.