Cow genome map
| Conread name: | Ss1.1-rspc011_k9.5 |
| Conread position: | 58-671 |
| Cow position: | chr19:31341357-31341984 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 75 |
| Conread position: | 69-701 |
| Cow position: | chr19:4385125-4385773 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 9 |
| Conread position: | 69-736 |
| Cow position: | chr19:39390164-39390835 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 9 |
| Conread position: | 75-736 |
| Cow position: | chr19:171842-172538 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 554 |
| Conread position: | 76-485 |
| Cow position: | chr19:4252704-4252285 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 73 |
| Conread position: | 78-424 |
| Cow position: | chr19:35376200-35376572 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 255 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 57, 300 |
| Conread position: | 78-568 |
| Cow position: | chr19:32193218-32193741 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 31 |
| Conread position: | 78-571 |
| Cow position: | chr19:29209222-29209721 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 53 |
| Conread position: | 78-758 |
| Cow position: | chr19:39546294-39546972 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 39 |
| Conread position: | 78-811 |
| Cow position: | chr19:32223774-32223037 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 548 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 27 |
| Conread position: | 80-810 |
| Cow position: | chr19:30754813-30755580 (view UCSC Genome Browser custom track) |
| Alignm length: | 776 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 44 |
| Conread position: | 81-736 |
| Cow position: | chr19:32665190-32665852 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 70 |
| Conread position: | 84-638 |
| Cow position: | chr19:20125275-20125837 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 18 |
| Conread position: | 84-646 |
| Cow position: | chr19:30371937-30372511 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 66 |
| Conread position: | 84-736 |
| Cow position: | chr19:416310-416988 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 38 |
| Conread position: | 87-440 |
| Cow position: | chr19:1031778-1032131 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 242 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 213, 63 |
| Conread position: | 89-633 |
| Cow position: | chr19:34089-34640 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 62 |
| Conread position: | 97-524 |
| Cow position: | chr19:4533069-4532639 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 51 |
| Conread position: | 127-727 |
| Cow position: | chr19:32244379-32245002 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 16 |
| Conread position: | 148-736 |
| Cow position: | chr19:28581920-28581332 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 78 |
| Conread position: | 151-626 |
| Cow position: | chr19:55078470-55078963 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 151-736 |
| Cow position: | chr19:439922-439330 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 423 |
| Conread position: | 151-736 |
| Cow position: | chr19:7488037-7488640 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 237 |
| Conread position: | 151-736 |
| Cow position: | chr19:10672582-10671979 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 259 |
| Conread position: | 151-736 |
| Cow position: | chr19:33941336-33941937 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 429 |
| Conread position: | 152-732 |
| Cow position: | chr19:203685-204284 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 257 |
| Conread position: | 154-645 |
| Cow position: | chr19:7405703-7405240 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 326 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 53, 45 |
| Conread position: | 154-694 |
| Cow position: | chr19:261167-261728 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 106 |
| Conread position: | 154-714 |
| Cow position: | chr19:40887918-40887352 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 23 |
| Conread position: | 154-723 |
| Cow position: | chr19:7450270-7449711 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 43 |
| Conread position: | 154-729 |
| Cow position: | chr19:39688277-39688847 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 58 |
| Conread position: | 154-736 |
| Cow position: | chr19:76505-75942 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 55 |
| Conread position: | 154-740 |
| Cow position: | chr19:40852703-40852106 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 306 |
| Conread position: | 154-797 |
| Cow position: | chr19:20111497-20110870 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 410 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 69, 258 |
| Conread position: | 154-803 |
| Cow position: | chr19:15953604-15954237 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 47 |
| Conread position: | 159-811 |
| Cow position: | chr19:378153-377502 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 163 |
| Conread position: | 163-322 |
| Cow position: | chr19:32238128-32237965 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 164-454 |
| Cow position: | chr19:52152512-52152218 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 136, 51 |
| Conread position: | 164-724 |
| Cow position: | chr19:772347-772914 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 52 |
| Conread position: | 164-732 |
| Cow position: | chr19:37645-38218 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 46 |
| Conread position: | 164-736 |
| Cow position: | chr19:171006-170420 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 251 |
| Conread position: | 164-736 |
| Cow position: | chr19:7341809-7342395 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 164-736 |
| Cow position: | chr19:28593017-28593590 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 82 |
| Conread position: | 164-736 |
| Cow position: | chr19:32212323-32211746 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 79 |
| Conread position: | 164-736 |
| Cow position: | chr19:43143453-43144043 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 463 |
| Conread position: | 177-736 |
| Cow position: | chr19:893853-893288 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 393 |
| Conread position: | 190-512 |
| Cow position: | chr19:561731-561405 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 45, 292 |
| Conread position: | 205-421 |
| Cow position: | chr19:17018309-17018526 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 19, 31 |
| Conread position: | 219-685 |
| Cow position: | chr19:35979063-35979543 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 321 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 10, 141 |
| Conread position: | 254-553 |
| Cow position: | chr19:27052932-27052625 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 134 |
| Conread position: | 299-625 |
| Cow position: | chr19:543737-543410 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 56 |
| Conread position: | 301-736 |
| Cow position: | chr19:33873317-33873753 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 177 |
| Conread position: | 303-501 |
| Cow position: | chr19:28376423-28376614 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 136, 84 |
| Conread position: | 303-696 |
| Cow position: | chr19:42299606-42299209 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 266 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 6, 76 |
| Conread position: | 303-752 |
| Cow position: | chr19:42248707-42249145 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 104 |
| Conread position: | 307-724 |
| Cow position: | chr19:350387-349976 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 198 |
| Conread position: | 316-811 |
| Cow position: | chr19:6553518-6554006 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 80 |
| Conread position: | 330-630 |
| Cow position: | chr19:32785692-32785394 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 117, 197 |
| Conread position: | 355-631 |
| Cow position: | chr19:32237736-32237460 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 41 |
| Conread position: | 399-801 |
| Cow position: | chr19:35376785-35377183 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 334, 15 |
| Conread position: | 415-732 |
| Cow position: | chr19:687070-687386 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 195 |
| Conread position: | 428-736 |
| Cow position: | chr19:52151814-52151503 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 187 |
| Conread position: | 429-736 |
| Cow position: | chr19:20104731-20105040 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 28 |
| Conread position: | 469-736 |
| Cow position: | chr19:1032137-1032402 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 34 |
| Conread position: | 470-815 |
| Cow position: | chr19:352932-352575 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 332 |
| Conread position: | 478-736 |
| Cow position: | chr19:2274309-2274051 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 498-739 |
| Cow position: | chr19:17018554-17018783 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 59, 34 |
| Conread position: | 498-813 |
| Cow position: | chr19:42649026-42648703 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 38 |
| Conread position: | 549-732 |
| Cow position: | chr19:28376623-28376809 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 155 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 18, 61 |
| Conread position: | 567-736 |
| Cow position: | chr19:40817545-40817376 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 569-710 |
| Cow position: | chr19:4532624-4532483 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 572-736 |
| Cow position: | chr19:29209762-29209924 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 581-736 |
| Cow position: | chr19:5729000-5729156 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 588-732 |
| Cow position: | chr19:439282-439138 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 610-736 |
| Cow position: | chr19:341421-341548 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 626-813 |
| Cow position: | chr19:42902-43099 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 634-813 |
| Cow position: | chr19:27052623-27052437 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 108, 94 |
Show alignments to all cow chromosomes.