Cow genome map


           Conread name:
           Ss1.1-rspc011_k9.5
        

               Conread position:
               58-671
               

               Cow position:
               
               

               Alignm length:
               637
               

               Alignm identity:
               438
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 75
               

               Conread position:
               69-701
               

               Cow position:
               
               

               Alignm length:
               656
               

               Alignm identity:
               462
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 9
               

               Conread position:
               69-736
               

               Cow position:
               
               

               Alignm length:
               684
               

               Alignm identity:
               487
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 9
               

               Conread position:
               75-736
               

               Cow position:
               
               

               Alignm length:
               698
               

               Alignm identity:
               495
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 554
               

               Conread position:
               76-485
               

               Cow position:
               
               

               Alignm length:
               427
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 73
               

               Conread position:
               78-424
               

               Cow position:
               
               

               Alignm length:
               374
               

               Alignm identity:
               255
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               57, 300
               

               Conread position:
               78-568
               

               Cow position:
               
               

               Alignm length:
               526
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 31
               

               Conread position:
               78-571
               

               Cow position:
               
               

               Alignm length:
               506
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 53
               

               Conread position:
               78-758
               

               Cow position:
               
               

               Alignm length:
               699
               

               Alignm identity:
               485
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               222, 39
               

               Conread position:
               78-811
               

               Cow position:
               
               

               Alignm length:
               756
               

               Alignm identity:
               548
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 27
               

               Conread position:
               80-810
               

               Cow position:
               
               

               Alignm length:
               776
               

               Alignm identity:
               502
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 44
               

               Conread position:
               81-736
               

               Cow position:
               
               

               Alignm length:
               676
               

               Alignm identity:
               497
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 70
               

               Conread position:
               84-638
               

               Cow position:
               
               

               Alignm length:
               586
               

               Alignm identity:
               397
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 18
               

               Conread position:
               84-646
               

               Cow position:
               
               

               Alignm length:
               588
               

               Alignm identity:
               422
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 66
               

               Conread position:
               84-736
               

               Cow position:
               
               

               Alignm length:
               687
               

               Alignm identity:
               493
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 38
               

               Conread position:
               87-440
               

               Cow position:
               
               

               Alignm length:
               363
               

               Alignm identity:
               242
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               213, 63
               

               Conread position:
               89-633
               

               Cow position:
               
               

               Alignm length:
               562
               

               Alignm identity:
               398
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 62
               

               Conread position:
               97-524
               

               Cow position:
               
               

               Alignm length:
               443
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 51
               

               Conread position:
               127-727
               

               Cow position:
               
               

               Alignm length:
               627
               

               Alignm identity:
               441
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 16
               

               Conread position:
               148-736
               

               Cow position:
               
               

               Alignm length:
               604
               

               Alignm identity:
               439
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 78
               

               Conread position:
               151-626
               

               Cow position:
               
               

               Alignm length:
               494
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               607
               

               Alignm identity:
               422
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 423
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               605
               

               Alignm identity:
               448
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 237
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               605
               

               Alignm identity:
               453
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 259
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               605
               

               Alignm identity:
               441
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 429
               

               Conread position:
               152-732
               

               Cow position:
               
               

               Alignm length:
               602
               

               Alignm identity:
               438
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 257
               

               Conread position:
               154-645
               

               Cow position:
               
               

               Alignm length:
               501
               

               Alignm identity:
               326
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               53, 45
               

               Conread position:
               154-694
               

               Cow position:
               
               

               Alignm length:
               569
               

               Alignm identity:
               405
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 106
               

               Conread position:
               154-714
               

               Cow position:
               
               

               Alignm length:
               581
               

               Alignm identity:
               420
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 23
               

               Conread position:
               154-723
               

               Cow position:
               
               

               Alignm length:
               582
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 43
               

               Conread position:
               154-729
               

               Cow position:
               
               

               Alignm length:
               592
               

               Alignm identity:
               441
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 58
               

               Conread position:
               154-736
               

               Cow position:
               
               

               Alignm length:
               594
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 55
               

               Conread position:
               154-740
               

               Cow position:
               
               

               Alignm length:
               604
               

               Alignm identity:
               439
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 306
               

               Conread position:
               154-797
               

               Cow position:
               
               

               Alignm length:
               660
               

               Alignm identity:
               410
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               69, 258
               

               Conread position:
               154-803
               

               Cow position:
               
               

               Alignm length:
               665
               

               Alignm identity:
               434
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 47
               

               Conread position:
               159-811
               

               Cow position:
               
               

               Alignm length:
               681
               

               Alignm identity:
               450
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 163
               

               Conread position:
               163-322
               

               Cow position:
               
               

               Alignm length:
               164
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               164-454
               

               Cow position:
               
               

               Alignm length:
               303
               

               Alignm identity:
               209
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               136, 51
               

               Conread position:
               164-724
               

               Cow position:
               
               

               Alignm length:
               576
               

               Alignm identity:
               412
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 52
               

               Conread position:
               164-732
               

               Cow position:
               
               

               Alignm length:
               580
               

               Alignm identity:
               423
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 46
               

               Conread position:
               164-736
               

               Cow position:
               
               

               Alignm length:
               595
               

               Alignm identity:
               413
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 251
               

               Conread position:
               164-736
               

               Cow position:
               
               

               Alignm length:
               587
               

               Alignm identity:
               418
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               164-736
               

               Cow position:
               
               

               Alignm length:
               596
               

               Alignm identity:
               422
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 82
               

               Conread position:
               164-736
               

               Cow position:
               
               

               Alignm length:
               584
               

               Alignm identity:
               425
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 79
               

               Conread position:
               164-736
               

               Cow position:
               
               

               Alignm length:
               592
               

               Alignm identity:
               425
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 463
               

               Conread position:
               177-736
               

               Cow position:
               
               

               Alignm length:
               568
               

               Alignm identity:
               420
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 393
               

               Conread position:
               190-512
               

               Cow position:
               
               

               Alignm length:
               330
               

               Alignm identity:
               216
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               45, 292
               

               Conread position:
               205-421
               

               Cow position:
               
               

               Alignm length:
               223
               

               Alignm identity:
               154
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               19, 31
               

               Conread position:
               219-685
               

               Cow position:
               
               

               Alignm length:
               486
               

               Alignm identity:
               321
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               10, 141
               

               Conread position:
               254-553
               

               Cow position:
               
               

               Alignm length:
               312
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 134
               

               Conread position:
               299-625
               

               Cow position:
               
               

               Alignm length:
               330
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 56
               

               Conread position:
               301-736
               

               Cow position:
               
               

               Alignm length:
               438
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 177
               

               Conread position:
               303-501
               

               Cow position:
               
               

               Alignm length:
               201
               

               Alignm identity:
               156
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               136, 84
               

               Conread position:
               303-696
               

               Cow position:
               
               

               Alignm length:
               401
               

               Alignm identity:
               266
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               6, 76
               

               Conread position:
               303-752
               

               Cow position:
               
               

               Alignm length:
               453
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               318, 104
               

               Conread position:
               307-724
               

               Cow position:
               
               

               Alignm length:
               422
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 198
               

               Conread position:
               316-811
               

               Cow position:
               
               

               Alignm length:
               503
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 80
               

               Conread position:
               330-630
               

               Cow position:
               
               

               Alignm length:
               303
               

               Alignm identity:
               189
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               117, 197
               

               Conread position:
               355-631
               

               Cow position:
               
               

               Alignm length:
               280
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 41
               

               Conread position:
               399-801
               

               Cow position:
               
               

               Alignm length:
               413
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               334, 15
               

               Conread position:
               415-732
               

               Cow position:
               
               

               Alignm length:
               320
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 195
               

               Conread position:
               428-736
               

               Cow position:
               
               

               Alignm length:
               313
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 187
               

               Conread position:
               429-736
               

               Cow position:
               
               

               Alignm length:
               311
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 28
               

               Conread position:
               469-736
               

               Cow position:
               
               

               Alignm length:
               269
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 34
               

               Conread position:
               470-815
               

               Cow position:
               
               

               Alignm length:
               360
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               203, 332
               

               Conread position:
               478-736
               

               Cow position:
               
               

               Alignm length:
               259
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               498-739
               

               Cow position:
               
               

               Alignm length:
               244
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               59, 34
               

               Conread position:
               498-813
               

               Cow position:
               
               

               Alignm length:
               328
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 38
               

               Conread position:
               549-732
               

               Cow position:
               
               

               Alignm length:
               188
               

               Alignm identity:
               155
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               18, 61
               

               Conread position:
               567-736
               

               Cow position:
               
               

               Alignm length:
               170
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               569-710
               

               Cow position:
               
               

               Alignm length:
               142
               

               Alignm identity:
               109
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               572-736
               

               Cow position:
               
               

               Alignm length:
               165
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               581-736
               

               Cow position:
               
               

               Alignm length:
               157
               

               Alignm identity:
               120
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               588-732
               

               Cow position:
               
               

               Alignm length:
               145
               

               Alignm identity:
               111
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               610-736
               

               Cow position:
               
               

               Alignm length:
               128
               

               Alignm identity:
               100
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               626-813
               

               Cow position:
               
               

               Alignm length:
               198
               

               Alignm identity:
               142
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               114, 0
               

               Conread position:
               634-813
               

               Cow position:
               
               

               Alignm length:
               189
               

               Alignm identity:
               144
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               108, 94
               
Show alignments to all cow chromosomes.