Cow genome map
| Conread name: | Ss1.1-rspc011_k9.5 |
| Conread position: | 69-736 |
| Cow position: | chr20:7116868-7116185 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 54 |
| Conread position: | 69-736 |
| Cow position: | chr20:13762504-13763188 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 9 |
| Conread position: | 71-732 |
| Cow position: | chr20:13782329-13782968 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 412 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 18, 74 |
| Conread position: | 78-560 |
| Cow position: | chr20:22718075-22717586 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 327 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 56, 34 |
| Conread position: | 78-585 |
| Cow position: | chr20:21393163-21393697 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 323 |
| Conread position: | 78-723 |
| Cow position: | chr20:13665575-13664944 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 13 |
| Conread position: | 78-736 |
| Cow position: | chr20:3252527-3251851 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 39 |
| Conread position: | 78-736 |
| Cow position: | chr20:5534550-5535221 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 39 |
| Conread position: | 78-736 |
| Cow position: | chr20:15291639-15292294 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 106 |
| Conread position: | 78-736 |
| Cow position: | chr20:21913930-21914611 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 113 |
| Conread position: | 84-364 |
| Cow position: | chr20:11276678-11276386 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 52, 138 |
| Conread position: | 88-813 |
| Cow position: | chr20:18315957-18315243 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 115-736 |
| Cow position: | chr20:8313786-8313156 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 19 |
| Conread position: | 148-736 |
| Cow position: | chr20:12439086-12438477 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 148-736 |
| Cow position: | chr20:27868873-27869481 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 148-736 |
| Cow position: | chr20:30684014-30684604 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 249 |
| Conread position: | 150-736 |
| Cow position: | chr20:5561038-5560431 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 483 |
| Conread position: | 151-309 |
| Cow position: | chr20:8004832-8004669 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 151-736 |
| Cow position: | chr20:15098186-15097593 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 465 |
| Conread position: | 151-736 |
| Cow position: | chr20:23469979-23469382 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 501 |
| Conread position: | 151-736 |
| Cow position: | chr20:23798564-23799169 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 588 |
| Conread position: | 151-736 |
| Cow position: | chr20:28565919-28565312 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 151-740 |
| Cow position: | chr20:25851309-25850702 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 322 |
| Conread position: | 152-520 |
| Cow position: | chr20:10846396-10846009 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 104 |
| Conread position: | 152-736 |
| Cow position: | chr20:5483873-5484474 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 141 |
| Conread position: | 154-370 |
| Cow position: | chr20:3032622-3032845 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 67, 122 |
| Conread position: | 154-565 |
| Cow position: | chr20:4799960-4799536 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 23 |
| Conread position: | 154-736 |
| Cow position: | chr20:3270407-3270988 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 80 |
| Conread position: | 154-736 |
| Cow position: | chr20:15064449-15065049 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 323 |
| Conread position: | 154-736 |
| Cow position: | chr20:24614234-24614819 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 216 |
| Conread position: | 154-736 |
| Cow position: | chr20:28160465-28161054 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 234 |
| Conread position: | 154-813 |
| Cow position: | chr20:9954269-9953618 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 62 |
| Conread position: | 157-550 |
| Cow position: | chr20:10102858-10102461 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 92 |
| Conread position: | 166-736 |
| Cow position: | chr20:19437661-19438224 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 77 |
| Conread position: | 206-501 |
| Cow position: | chr20:35119061-35119371 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 13, 182 |
| Conread position: | 218-553 |
| Cow position: | chr20:29572431-29572092 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 222 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 82, 257 |
| Conread position: | 219-487 |
| Cow position: | chr20:19192377-19192093 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 207 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 233-644 |
| Cow position: | chr20:11679343-11678918 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 393 |
| Conread position: | 242-553 |
| Cow position: | chr20:35973636-35973308 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 257-740 |
| Cow position: | chr20:35119365-35119858 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 127 |
| Conread position: | 280-634 |
| Cow position: | chr20:24516859-24517213 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 29, 198 |
| Conread position: | 299-431 |
| Cow position: | chr20:24390219-24390351 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 300-740 |
| Cow position: | chr20:2791500-2791053 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 303 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 46, 55 |
| Conread position: | 301-740 |
| Cow position: | chr20:8004378-8003938 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 286 |
| Conread position: | 302-517 |
| Cow position: | chr20:28593596-28593802 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 142, 94 |
| Conread position: | 303-811 |
| Cow position: | chr20:31379033-31378520 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 93 |
| Conread position: | 303-813 |
| Cow position: | chr20:22206398-22206908 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 37 |
| Conread position: | 315-736 |
| Cow position: | chr20:822628-823051 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 296 |
| Conread position: | 328-732 |
| Cow position: | chr20:15947519-15947100 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 253 |
| Conread position: | 330-699 |
| Cow position: | chr20:28476194-28476545 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 291, 38 |
| Conread position: | 342-736 |
| Cow position: | chr20:25960991-25961387 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 269 |
| Conread position: | 355-736 |
| Cow position: | chr20:3032965-3033345 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 41 |
| Conread position: | 363-736 |
| Cow position: | chr20:13680147-13679774 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 96 |
| Conread position: | 399-736 |
| Cow position: | chr20:29948444-29948783 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 197 |
| Conread position: | 415-735 |
| Cow position: | chr20:3684524-3684205 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 157 |
| Conread position: | 469-713 |
| Cow position: | chr20:10841230-10840986 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 29, 200 |
| Conread position: | 478-798 |
| Cow position: | chr20:8993618-8993291 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 144, 51 |
| Conread position: | 512-740 |
| Cow position: | chr20:13434890-13434666 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 109, 22 |
| Conread position: | 518-718 |
| Cow position: | chr20:19367523-19367324 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 100, 126 |
| Conread position: | 522-740 |
| Cow position: | chr20:35104562-35104341 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 75, 93 |
| Conread position: | 558-736 |
| Cow position: | chr20:10846011-10845838 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 63, 12 |
Show alignments to all cow chromosomes.