Cow genome map
Conread name: | Ss1.1-rspc011_k9.5 |
Conread position: | 69-740 |
Cow position: | chr21:36714364-36715036 (view UCSC Genome Browser custom track) |
Alignm length: | 690 |
Alignm identity: | 463 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 172, 61 |
Conread position: | 71-438 |
Cow position: | chr21:4083356-4083749 (view UCSC Genome Browser custom track) |
Alignm length: | 397 |
Alignm identity: | 254 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 21, 320 |
Conread position: | 72-730 |
Cow position: | chr21:47947831-47948505 (view UCSC Genome Browser custom track) |
Alignm length: | 680 |
Alignm identity: | 478 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 76 |
Conread position: | 78-462 |
Cow position: | chr21:17572640-17573050 (view UCSC Genome Browser custom track) |
Alignm length: | 413 |
Alignm identity: | 279 |
Alignm E-value: | 3e-39 |
Alignm gaps (pig, cow): | 23, 31 |
Conread position: | 78-611 |
Cow position: | chr21:34259479-34258952 (view UCSC Genome Browser custom track) |
Alignm length: | 546 |
Alignm identity: | 394 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 148, 28 |
Conread position: | 78-711 |
Cow position: | chr21:47939210-47939849 (view UCSC Genome Browser custom track) |
Alignm length: | 662 |
Alignm identity: | 465 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 146, 53 |
Conread position: | 78-712 |
Cow position: | chr21:3426217-3426864 (view UCSC Genome Browser custom track) |
Alignm length: | 655 |
Alignm identity: | 477 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 144, 70 |
Conread position: | 78-730 |
Cow position: | chr21:2530395-2529731 (view UCSC Genome Browser custom track) |
Alignm length: | 674 |
Alignm identity: | 475 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 149, 72 |
Conread position: | 78-732 |
Cow position: | chr21:1292464-1291792 (view UCSC Genome Browser custom track) |
Alignm length: | 687 |
Alignm identity: | 498 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 62, 348 |
Conread position: | 78-736 |
Cow position: | chr21:4076578-4077240 (view UCSC Genome Browser custom track) |
Alignm length: | 674 |
Alignm identity: | 480 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 149, 72 |
Conread position: | 78-736 |
Cow position: | chr21:7267822-7267134 (view UCSC Genome Browser custom track) |
Alignm length: | 696 |
Alignm identity: | 485 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 87, 313 |
Conread position: | 78-815 |
Cow position: | chr21:23860492-23861269 (view UCSC Genome Browser custom track) |
Alignm length: | 795 |
Alignm identity: | 526 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 10, 492 |
Conread position: | 80-736 |
Cow position: | chr21:3778497-3779169 (view UCSC Genome Browser custom track) |
Alignm length: | 681 |
Alignm identity: | 484 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 55 |
Conread position: | 80-736 |
Cow position: | chr21:35596113-35596769 (view UCSC Genome Browser custom track) |
Alignm length: | 672 |
Alignm identity: | 498 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 71 |
Conread position: | 81-585 |
Cow position: | chr21:2716936-2716430 (view UCSC Genome Browser custom track) |
Alignm length: | 521 |
Alignm identity: | 378 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 70 |
Conread position: | 82-824 |
Cow position: | chr21:358739-359531 (view UCSC Genome Browser custom track) |
Alignm length: | 803 |
Alignm identity: | 573 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 97, 35 |
Conread position: | 84-628 |
Cow position: | chr21:2769735-2769166 (view UCSC Genome Browser custom track) |
Alignm length: | 576 |
Alignm identity: | 403 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 157 |
Conread position: | 84-693 |
Cow position: | chr21:4222958-4222333 (view UCSC Genome Browser custom track) |
Alignm length: | 638 |
Alignm identity: | 461 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 139, 66 |
Conread position: | 91-815 |
Cow position: | chr21:20745016-20744286 (view UCSC Genome Browser custom track) |
Alignm length: | 751 |
Alignm identity: | 488 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 87 |
Conread position: | 107-508 |
Cow position: | chr21:444881-445296 (view UCSC Genome Browser custom track) |
Alignm length: | 425 |
Alignm identity: | 272 |
Alignm E-value: | 6e-24 |
Alignm gaps (pig, cow): | 60, 105 |
Conread position: | 124-706 |
Cow position: | chr21:6699784-6699209 (view UCSC Genome Browser custom track) |
Alignm length: | 605 |
Alignm identity: | 389 |
Alignm E-value: | 2e-36 |
Alignm gaps (pig, cow): | 66, 26 |
Conread position: | 129-736 |
Cow position: | chr21:46915369-46915991 (view UCSC Genome Browser custom track) |
Alignm length: | 629 |
Alignm identity: | 450 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 35, 14 |
Conread position: | 146-722 |
Cow position: | chr21:25992824-25992229 (view UCSC Genome Browser custom track) |
Alignm length: | 604 |
Alignm identity: | 389 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 61 |
Conread position: | 148-388 |
Cow position: | chr21:40272016-40271767 (view UCSC Genome Browser custom track) |
Alignm length: | 252 |
Alignm identity: | 182 |
Alignm E-value: | 2e-35 |
Alignm gaps (pig, cow): | 71, 95 |
Conread position: | 148-736 |
Cow position: | chr21:2416042-2416621 (view UCSC Genome Browser custom track) |
Alignm length: | 601 |
Alignm identity: | 436 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 96 |
Conread position: | 150-736 |
Cow position: | chr21:2476714-2476138 (view UCSC Genome Browser custom track) |
Alignm length: | 607 |
Alignm identity: | 419 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 265 |
Conread position: | 150-736 |
Cow position: | chr21:12056201-12055598 (view UCSC Genome Browser custom track) |
Alignm length: | 605 |
Alignm identity: | 441 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 479 |
Conread position: | 151-488 |
Cow position: | chr21:1190842-1191203 (view UCSC Genome Browser custom track) |
Alignm length: | 362 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 0 |
Conread position: | 151-598 |
Cow position: | chr21:33251192-33251657 (view UCSC Genome Browser custom track) |
Alignm length: | 466 |
Alignm identity: | 339 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 0 |
Conread position: | 151-732 |
Cow position: | chr21:48115908-48116500 (view UCSC Genome Browser custom track) |
Alignm length: | 602 |
Alignm identity: | 424 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 337 |
Conread position: | 151-736 |
Cow position: | chr21:2883934-2883345 (view UCSC Genome Browser custom track) |
Alignm length: | 592 |
Alignm identity: | 435 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 160 |
Conread position: | 151-736 |
Cow position: | chr21:4590159-4589588 (view UCSC Genome Browser custom track) |
Alignm length: | 589 |
Alignm identity: | 421 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 292, 92 |
Conread position: | 151-736 |
Cow position: | chr21:10566479-10567071 (view UCSC Genome Browser custom track) |
Alignm length: | 600 |
Alignm identity: | 432 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 186 |
Conread position: | 151-736 |
Cow position: | chr21:10849880-10850482 (view UCSC Genome Browser custom track) |
Alignm length: | 604 |
Alignm identity: | 440 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 532 |
Conread position: | 151-736 |
Cow position: | chr21:30561602-30562205 (view UCSC Genome Browser custom track) |
Alignm length: | 604 |
Alignm identity: | 443 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 0 |
Conread position: | 151-736 |
Cow position: | chr21:31559847-31559253 (view UCSC Genome Browser custom track) |
Alignm length: | 602 |
Alignm identity: | 434 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 149, 76 |
Conread position: | 151-736 |
Cow position: | chr21:39424870-39425466 (view UCSC Genome Browser custom track) |
Alignm length: | 603 |
Alignm identity: | 421 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 149, 92 |
Conread position: | 152-569 |
Cow position: | chr21:26819215-26818785 (view UCSC Genome Browser custom track) |
Alignm length: | 431 |
Alignm identity: | 308 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 12, 0 |
Conread position: | 152-736 |
Cow position: | chr21:13124198-13123603 (view UCSC Genome Browser custom track) |
Alignm length: | 603 |
Alignm identity: | 453 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 71, 28 |
Conread position: | 153-536 |
Cow position: | chr21:21517012-21517392 (view UCSC Genome Browser custom track) |
Alignm length: | 397 |
Alignm identity: | 260 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 54, 48 |
Conread position: | 154-420 |
Cow position: | chr21:28529739-28529459 (view UCSC Genome Browser custom track) |
Alignm length: | 281 |
Alignm identity: | 197 |
Alignm E-value: | 6e-34 |
Alignm gaps (pig, cow): | 71, 0 |
Conread position: | 154-422 |
Cow position: | chr21:2501741-2502015 (view UCSC Genome Browser custom track) |
Alignm length: | 281 |
Alignm identity: | 202 |
Alignm E-value: | 2e-36 |
Alignm gaps (pig, cow): | 71, 225 |
Conread position: | 154-574 |
Cow position: | chr21:3615097-3615534 (view UCSC Genome Browser custom track) |
Alignm length: | 440 |
Alignm identity: | 331 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 71, 108 |
Conread position: | 154-730 |
Cow position: | chr21:2789178-2788596 (view UCSC Genome Browser custom track) |
Alignm length: | 593 |
Alignm identity: | 449 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 148, 72 |
Conread position: | 154-736 |
Cow position: | chr21:4090453-4091052 (view UCSC Genome Browser custom track) |
Alignm length: | 604 |
Alignm identity: | 436 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 80, 56 |
Conread position: | 154-736 |
Cow position: | chr21:26638653-26638062 (view UCSC Genome Browser custom track) |
Alignm length: | 598 |
Alignm identity: | 441 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 146, 89 |
Conread position: | 154-736 |
Cow position: | chr21:34292822-34293418 (view UCSC Genome Browser custom track) |
Alignm length: | 602 |
Alignm identity: | 452 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 71, 258 |
Conread position: | 154-812 |
Cow position: | chr21:23811713-23812361 (view UCSC Genome Browser custom track) |
Alignm length: | 670 |
Alignm identity: | 485 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 138, 62 |
Conread position: | 154-813 |
Cow position: | chr21:9891416-9892091 (view UCSC Genome Browser custom track) |
Alignm length: | 692 |
Alignm identity: | 499 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 72, 34 |
Conread position: | 157-736 |
Cow position: | chr21:145726-146325 (view UCSC Genome Browser custom track) |
Alignm length: | 601 |
Alignm identity: | 446 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 59, 526 |
Conread position: | 157-736 |
Cow position: | chr21:30600108-30599523 (view UCSC Genome Browser custom track) |
Alignm length: | 594 |
Alignm identity: | 424 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 62, 29 |
Conread position: | 157-792 |
Cow position: | chr21:4183349-4183983 (view UCSC Genome Browser custom track) |
Alignm length: | 651 |
Alignm identity: | 464 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 78, 55 |
Conread position: | 164-534 |
Cow position: | chr21:27708575-27708964 (view UCSC Genome Browser custom track) |
Alignm length: | 390 |
Alignm identity: | 271 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 61, 0 |
Conread position: | 164-736 |
Cow position: | chr21:2510468-2511054 (view UCSC Genome Browser custom track) |
Alignm length: | 588 |
Alignm identity: | 427 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 39, 258 |
Conread position: | 164-736 |
Cow position: | chr21:11453840-11453253 (view UCSC Genome Browser custom track) |
Alignm length: | 589 |
Alignm identity: | 427 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 61, 463 |
Conread position: | 164-736 |
Cow position: | chr21:11505400-11505999 (view UCSC Genome Browser custom track) |
Alignm length: | 600 |
Alignm identity: | 425 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 164-736 |
Cow position: | chr21:37044732-37045313 (view UCSC Genome Browser custom track) |
Alignm length: | 588 |
Alignm identity: | 425 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 136, 39 |
Conread position: | 219-440 |
Cow position: | chr21:27624-27848 (view UCSC Genome Browser custom track) |
Alignm length: | 231 |
Alignm identity: | 166 |
Alignm E-value: | 8e-27 |
Alignm gaps (pig, cow): | 21, 152 |
Conread position: | 219-813 |
Cow position: | chr21:2541545-2540924 (view UCSC Genome Browser custom track) |
Alignm length: | 625 |
Alignm identity: | 428 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 306 |
Conread position: | 224-708 |
Cow position: | chr21:30165598-30165107 (view UCSC Genome Browser custom track) |
Alignm length: | 502 |
Alignm identity: | 308 |
Alignm E-value: | 6e-24 |
Alignm gaps (pig, cow): | 55, 12 |
Conread position: | 254-736 |
Cow position: | chr21:4456737-4457229 (view UCSC Genome Browser custom track) |
Alignm length: | 497 |
Alignm identity: | 381 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 14 |
Conread position: | 277-736 |
Cow position: | chr21:26823297-26822830 (view UCSC Genome Browser custom track) |
Alignm length: | 473 |
Alignm identity: | 308 |
Alignm E-value: | 2.00386e-43 |
Alignm gaps (pig, cow): | 23, 85 |
Conread position: | 297-790 |
Cow position: | chr21:8678399-8677903 (view UCSC Genome Browser custom track) |
Alignm length: | 499 |
Alignm identity: | 291 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 29 |
Conread position: | 300-721 |
Cow position: | chr21:216270-216677 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 283 |
Alignm E-value: | 3e-37 |
Alignm gaps (pig, cow): | 18, 70 |
Conread position: | 301-722 |
Cow position: | chr21:23601162-23601579 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 274 |
Alignm E-value: | 5e-33 |
Alignm gaps (pig, cow): | 11, 72 |
Conread position: | 301-735 |
Cow position: | chr21:993052-992629 (view UCSC Genome Browser custom track) |
Alignm length: | 437 |
Alignm identity: | 287 |
Alignm E-value: | 2.00386e-43 |
Alignm gaps (pig, cow): | 7, 64 |
Conread position: | 301-736 |
Cow position: | chr21:2674661-2674209 (view UCSC Genome Browser custom track) |
Alignm length: | 457 |
Alignm identity: | 317 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 144, 82 |
Conread position: | 303-660 |
Cow position: | chr21:33755276-33755628 (view UCSC Genome Browser custom track) |
Alignm length: | 363 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 141, 93 |
Conread position: | 305-740 |
Cow position: | chr21:21914255-21914692 (view UCSC Genome Browser custom track) |
Alignm length: | 441 |
Alignm identity: | 293 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 141, 268 |
Conread position: | 317-714 |
Cow position: | chr21:21947821-21947427 (view UCSC Genome Browser custom track) |
Alignm length: | 407 |
Alignm identity: | 258 |
Alignm E-value: | 9e-28 |
Alignm gaps (pig, cow): | 10, 44 |
Conread position: | 320-736 |
Cow position: | chr21:27282372-27282788 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 307 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 119, 283 |
Conread position: | 327-736 |
Cow position: | chr21:6339558-6339969 (view UCSC Genome Browser custom track) |
Alignm length: | 413 |
Alignm identity: | 319 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 118, 284 |
Conread position: | 331-638 |
Cow position: | chr21:18692721-18693017 (view UCSC Genome Browser custom track) |
Alignm length: | 311 |
Alignm identity: | 203 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 15, 25 |
Conread position: | 384-736 |
Cow position: | chr21:40271628-40271274 (view UCSC Genome Browser custom track) |
Alignm length: | 355 |
Alignm identity: | 264 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 61, 0 |
Conread position: | 387-663 |
Cow position: | chr21:34054688-34054405 (view UCSC Genome Browser custom track) |
Alignm length: | 289 |
Alignm identity: | 194 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 58, 5 |
Conread position: | 392-720 |
Cow position: | chr21:21926645-21926324 (view UCSC Genome Browser custom track) |
Alignm length: | 329 |
Alignm identity: | 208 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 43, 0 |
Conread position: | 435-732 |
Cow position: | chr21:3798271-3797972 (view UCSC Genome Browser custom track) |
Alignm length: | 301 |
Alignm identity: | 239 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 99 |
Conread position: | 438-736 |
Cow position: | chr21:18820311-18820027 (view UCSC Genome Browser custom track) |
Alignm length: | 299 |
Alignm identity: | 227 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 24, 0 |
Conread position: | 454-736 |
Cow position: | chr21:2502015-2502293 (view UCSC Genome Browser custom track) |
Alignm length: | 290 |
Alignm identity: | 206 |
Alignm E-value: | 2e-35 |
Alignm gaps (pig, cow): | 27, 40 |
Conread position: | 468-736 |
Cow position: | chr21:1191298-1191566 (view UCSC Genome Browser custom track) |
Alignm length: | 269 |
Alignm identity: | 196 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 469-737 |
Cow position: | chr21:4086938-4087207 (view UCSC Genome Browser custom track) |
Alignm length: | 272 |
Alignm identity: | 176 |
Alignm E-value: | 6e-24 |
Alignm gaps (pig, cow): | 60, 19 |
Conread position: | 511-736 |
Cow position: | chr21:26650219-26650444 (view UCSC Genome Browser custom track) |
Alignm length: | 227 |
Alignm identity: | 172 |
Alignm E-value: | 1.96182e-44 |
Alignm gaps (pig, cow): | 110, 101 |
Conread position: | 536-736 |
Cow position: | chr21:35143971-35144159 (view UCSC Genome Browser custom track) |
Alignm length: | 201 |
Alignm identity: | 149 |
Alignm E-value: | 1e-29 |
Alignm gaps (pig, cow): | 108, 0 |
Conread position: | 547-736 |
Cow position: | chr21:3615536-3615714 (view UCSC Genome Browser custom track) |
Alignm length: | 190 |
Alignm identity: | 149 |
Alignm E-value: | 7e-36 |
Alignm gaps (pig, cow): | 34, 0 |
Conread position: | 571-813 |
Cow position: | chr21:30226257-30226502 (view UCSC Genome Browser custom track) |
Alignm length: | 250 |
Alignm identity: | 192 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 50, 38 |
Conread position: | 576-734 |
Cow position: | chr21:9869994-9870147 (view UCSC Genome Browser custom track) |
Alignm length: | 159 |
Alignm identity: | 118 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 33, 0 |
Conread position: | 597-735 |
Cow position: | chr21:34258726-34258587 (view UCSC Genome Browser custom track) |
Alignm length: | 141 |
Alignm identity: | 115 |
Alignm E-value: | 4e-30 |
Alignm gaps (pig, cow): | 24, 11 |
Conread position: | 626-736 |
Cow position: | chr21:2716425-2716315 (view UCSC Genome Browser custom track) |
Alignm length: | 111 |
Alignm identity: | 94 |
Alignm E-value: | 3e-27 |
Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.