Cow genome map

Conread name: Ss1.1-rspc011_k9.5

Conread position: 69-740
Cow position: chr21:36714364-36715036 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 61

Conread position: 71-438
Cow position: chr21:4083356-4083749 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 254
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 21, 320

Conread position: 72-730
Cow position: chr21:47947831-47948505 (view UCSC Genome Browser custom track)
Alignm length: 680
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 76

Conread position: 78-462
Cow position: chr21:17572640-17573050 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 279
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 23, 31

Conread position: 78-611
Cow position: chr21:34259479-34258952 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 28

Conread position: 78-711
Cow position: chr21:47939210-47939849 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 53

Conread position: 78-712
Cow position: chr21:3426217-3426864 (view UCSC Genome Browser custom track)
Alignm length: 655
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 70

Conread position: 78-730
Cow position: chr21:2530395-2529731 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 72

Conread position: 78-732
Cow position: chr21:1292464-1291792 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 348

Conread position: 78-736
Cow position: chr21:4076578-4077240 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 72

Conread position: 78-736
Cow position: chr21:7267822-7267134 (view UCSC Genome Browser custom track)
Alignm length: 696
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 313

Conread position: 78-815
Cow position: chr21:23860492-23861269 (view UCSC Genome Browser custom track)
Alignm length: 795
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 492

Conread position: 80-736
Cow position: chr21:3778497-3779169 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 55

Conread position: 80-736
Cow position: chr21:35596113-35596769 (view UCSC Genome Browser custom track)
Alignm length: 672
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 71

Conread position: 81-585
Cow position: chr21:2716936-2716430 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 70

Conread position: 82-824
Cow position: chr21:358739-359531 (view UCSC Genome Browser custom track)
Alignm length: 803
Alignm identity: 573
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 35

Conread position: 84-628
Cow position: chr21:2769735-2769166 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 157

Conread position: 84-693
Cow position: chr21:4222958-4222333 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 66

Conread position: 91-815
Cow position: chr21:20745016-20744286 (view UCSC Genome Browser custom track)
Alignm length: 751
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 87

Conread position: 107-508
Cow position: chr21:444881-445296 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 272
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 60, 105

Conread position: 124-706
Cow position: chr21:6699784-6699209 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 389
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 66, 26

Conread position: 129-736
Cow position: chr21:46915369-46915991 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 14

Conread position: 146-722
Cow position: chr21:25992824-25992229 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 61

Conread position: 148-388
Cow position: chr21:40272016-40271767 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 182
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 71, 95

Conread position: 148-736
Cow position: chr21:2416042-2416621 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 96

Conread position: 150-736
Cow position: chr21:2476714-2476138 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 265

Conread position: 150-736
Cow position: chr21:12056201-12055598 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 479

Conread position: 151-488
Cow position: chr21:1190842-1191203 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 151-598
Cow position: chr21:33251192-33251657 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 151-732
Cow position: chr21:48115908-48116500 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 337

Conread position: 151-736
Cow position: chr21:2883934-2883345 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 160

Conread position: 151-736
Cow position: chr21:4590159-4589588 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 92

Conread position: 151-736
Cow position: chr21:10566479-10567071 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 186

Conread position: 151-736
Cow position: chr21:10849880-10850482 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 532

Conread position: 151-736
Cow position: chr21:30561602-30562205 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 151-736
Cow position: chr21:31559847-31559253 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 76

Conread position: 151-736
Cow position: chr21:39424870-39425466 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 92

Conread position: 152-569
Cow position: chr21:26819215-26818785 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 152-736
Cow position: chr21:13124198-13123603 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 28

Conread position: 153-536
Cow position: chr21:21517012-21517392 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 260
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 54, 48

Conread position: 154-420
Cow position: chr21:28529739-28529459 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 197
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 71, 0

Conread position: 154-422
Cow position: chr21:2501741-2502015 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 202
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 71, 225

Conread position: 154-574
Cow position: chr21:3615097-3615534 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 108

Conread position: 154-730
Cow position: chr21:2789178-2788596 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 72

Conread position: 154-736
Cow position: chr21:4090453-4091052 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 56

Conread position: 154-736
Cow position: chr21:26638653-26638062 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 89

Conread position: 154-736
Cow position: chr21:34292822-34293418 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 258

Conread position: 154-812
Cow position: chr21:23811713-23812361 (view UCSC Genome Browser custom track)
Alignm length: 670
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 62

Conread position: 154-813
Cow position: chr21:9891416-9892091 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 34

Conread position: 157-736
Cow position: chr21:145726-146325 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 526

Conread position: 157-736
Cow position: chr21:30600108-30599523 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 29

Conread position: 157-792
Cow position: chr21:4183349-4183983 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 55

Conread position: 164-534
Cow position: chr21:27708575-27708964 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 0

Conread position: 164-736
Cow position: chr21:2510468-2511054 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 258

Conread position: 164-736
Cow position: chr21:11453840-11453253 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 463

Conread position: 164-736
Cow position: chr21:11505400-11505999 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 164-736
Cow position: chr21:37044732-37045313 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 39

Conread position: 219-440
Cow position: chr21:27624-27848 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 166
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 21, 152

Conread position: 219-813
Cow position: chr21:2541545-2540924 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 306

Conread position: 224-708
Cow position: chr21:30165598-30165107 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 308
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 55, 12

Conread position: 254-736
Cow position: chr21:4456737-4457229 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 14

Conread position: 277-736
Cow position: chr21:26823297-26822830 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 308
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 23, 85

Conread position: 297-790
Cow position: chr21:8678399-8677903 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 29

Conread position: 300-721
Cow position: chr21:216270-216677 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 283
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 18, 70

Conread position: 301-722
Cow position: chr21:23601162-23601579 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 274
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 11, 72

Conread position: 301-735
Cow position: chr21:993052-992629 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 287
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 7, 64

Conread position: 301-736
Cow position: chr21:2674661-2674209 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 82

Conread position: 303-660
Cow position: chr21:33755276-33755628 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 93

Conread position: 305-740
Cow position: chr21:21914255-21914692 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 268

Conread position: 317-714
Cow position: chr21:21947821-21947427 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 258
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 10, 44

Conread position: 320-736
Cow position: chr21:27282372-27282788 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 283

Conread position: 327-736
Cow position: chr21:6339558-6339969 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 284

Conread position: 331-638
Cow position: chr21:18692721-18693017 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 203
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 15, 25

Conread position: 384-736
Cow position: chr21:40271628-40271274 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 0

Conread position: 387-663
Cow position: chr21:34054688-34054405 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 194
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 58, 5

Conread position: 392-720
Cow position: chr21:21926645-21926324 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 208
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 43, 0

Conread position: 435-732
Cow position: chr21:3798271-3797972 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 99

Conread position: 438-736
Cow position: chr21:18820311-18820027 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 454-736
Cow position: chr21:2502015-2502293 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 206
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 27, 40

Conread position: 468-736
Cow position: chr21:1191298-1191566 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 469-737
Cow position: chr21:4086938-4087207 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 176
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 60, 19

Conread position: 511-736
Cow position: chr21:26650219-26650444 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 172
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 110, 101

Conread position: 536-736
Cow position: chr21:35143971-35144159 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 149
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 108, 0

Conread position: 547-736
Cow position: chr21:3615536-3615714 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 149
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 34, 0

Conread position: 571-813
Cow position: chr21:30226257-30226502 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 192
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 50, 38

Conread position: 576-734
Cow position: chr21:9869994-9870147 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 33, 0

Conread position: 597-735
Cow position: chr21:34258726-34258587 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 115
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 24, 11

Conread position: 626-736
Cow position: chr21:2716425-2716315 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 94
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.