Cow genome map


           Conread name:
           Ss1.1-rspc011_k9.5
        

               Conread position:
               69-740
               

               Cow position:
               
               

               Alignm length:
               690
               

               Alignm identity:
               463
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               172, 61
               

               Conread position:
               71-438
               

               Cow position:
               
               

               Alignm length:
               397
               

               Alignm identity:
               254
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               21, 320
               

               Conread position:
               72-730
               

               Cow position:
               
               

               Alignm length:
               680
               

               Alignm identity:
               478
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 76
               

               Conread position:
               78-462
               

               Cow position:
               
               

               Alignm length:
               413
               

               Alignm identity:
               279
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               23, 31
               

               Conread position:
               78-611
               

               Cow position:
               
               

               Alignm length:
               546
               

               Alignm identity:
               394
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 28
               

               Conread position:
               78-711
               

               Cow position:
               
               

               Alignm length:
               662
               

               Alignm identity:
               465
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 53
               

               Conread position:
               78-712
               

               Cow position:
               
               

               Alignm length:
               655
               

               Alignm identity:
               477
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 70
               

               Conread position:
               78-730
               

               Cow position:
               
               

               Alignm length:
               674
               

               Alignm identity:
               475
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 72
               

               Conread position:
               78-732
               

               Cow position:
               
               

               Alignm length:
               687
               

               Alignm identity:
               498
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 348
               

               Conread position:
               78-736
               

               Cow position:
               
               

               Alignm length:
               674
               

               Alignm identity:
               480
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 72
               

               Conread position:
               78-736
               

               Cow position:
               
               

               Alignm length:
               696
               

               Alignm identity:
               485
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 313
               

               Conread position:
               78-815
               

               Cow position:
               
               

               Alignm length:
               795
               

               Alignm identity:
               526
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 492
               

               Conread position:
               80-736
               

               Cow position:
               
               

               Alignm length:
               681
               

               Alignm identity:
               484
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 55
               

               Conread position:
               80-736
               

               Cow position:
               
               

               Alignm length:
               672
               

               Alignm identity:
               498
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 71
               

               Conread position:
               81-585
               

               Cow position:
               
               

               Alignm length:
               521
               

               Alignm identity:
               378
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 70
               

               Conread position:
               82-824
               

               Cow position:
               
               

               Alignm length:
               803
               

               Alignm identity:
               573
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 35
               

               Conread position:
               84-628
               

               Cow position:
               
               

               Alignm length:
               576
               

               Alignm identity:
               403
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 157
               

               Conread position:
               84-693
               

               Cow position:
               
               

               Alignm length:
               638
               

               Alignm identity:
               461
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               139, 66
               

               Conread position:
               91-815
               

               Cow position:
               
               

               Alignm length:
               751
               

               Alignm identity:
               488
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 87
               

               Conread position:
               107-508
               

               Cow position:
               
               

               Alignm length:
               425
               

               Alignm identity:
               272
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               60, 105
               

               Conread position:
               124-706
               

               Cow position:
               
               

               Alignm length:
               605
               

               Alignm identity:
               389
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               66, 26
               

               Conread position:
               129-736
               

               Cow position:
               
               

               Alignm length:
               629
               

               Alignm identity:
               450
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 14
               

               Conread position:
               146-722
               

               Cow position:
               
               

               Alignm length:
               604
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 61
               

               Conread position:
               148-388
               

               Cow position:
               
               

               Alignm length:
               252
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               71, 95
               

               Conread position:
               148-736
               

               Cow position:
               
               

               Alignm length:
               601
               

               Alignm identity:
               436
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 96
               

               Conread position:
               150-736
               

               Cow position:
               
               

               Alignm length:
               607
               

               Alignm identity:
               419
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 265
               

               Conread position:
               150-736
               

               Cow position:
               
               

               Alignm length:
               605
               

               Alignm identity:
               441
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 479
               

               Conread position:
               151-488
               

               Cow position:
               
               

               Alignm length:
               362
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               151-598
               

               Cow position:
               
               

               Alignm length:
               466
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               151-732
               

               Cow position:
               
               

               Alignm length:
               602
               

               Alignm identity:
               424
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 337
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               592
               

               Alignm identity:
               435
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 160
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               589
               

               Alignm identity:
               421
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               292, 92
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               600
               

               Alignm identity:
               432
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 186
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               604
               

               Alignm identity:
               440
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 532
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               604
               

               Alignm identity:
               443
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               602
               

               Alignm identity:
               434
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 76
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               603
               

               Alignm identity:
               421
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 92
               

               Conread position:
               152-569
               

               Cow position:
               
               

               Alignm length:
               431
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               152-736
               

               Cow position:
               
               

               Alignm length:
               603
               

               Alignm identity:
               453
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 28
               

               Conread position:
               153-536
               

               Cow position:
               
               

               Alignm length:
               397
               

               Alignm identity:
               260
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               54, 48
               

               Conread position:
               154-420
               

               Cow position:
               
               

               Alignm length:
               281
               

               Alignm identity:
               197
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               154-422
               

               Cow position:
               
               

               Alignm length:
               281
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               71, 225
               

               Conread position:
               154-574
               

               Cow position:
               
               

               Alignm length:
               440
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 108
               

               Conread position:
               154-730
               

               Cow position:
               
               

               Alignm length:
               593
               

               Alignm identity:
               449
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 72
               

               Conread position:
               154-736
               

               Cow position:
               
               

               Alignm length:
               604
               

               Alignm identity:
               436
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 56
               

               Conread position:
               154-736
               

               Cow position:
               
               

               Alignm length:
               598
               

               Alignm identity:
               441
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 89
               

               Conread position:
               154-736
               

               Cow position:
               
               

               Alignm length:
               602
               

               Alignm identity:
               452
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 258
               

               Conread position:
               154-812
               

               Cow position:
               
               

               Alignm length:
               670
               

               Alignm identity:
               485
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 62
               

               Conread position:
               154-813
               

               Cow position:
               
               

               Alignm length:
               692
               

               Alignm identity:
               499
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 34
               

               Conread position:
               157-736
               

               Cow position:
               
               

               Alignm length:
               601
               

               Alignm identity:
               446
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 526
               

               Conread position:
               157-736
               

               Cow position:
               
               

               Alignm length:
               594
               

               Alignm identity:
               424
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 29
               

               Conread position:
               157-792
               

               Cow position:
               
               

               Alignm length:
               651
               

               Alignm identity:
               464
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 55
               

               Conread position:
               164-534
               

               Cow position:
               
               

               Alignm length:
               390
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               164-736
               

               Cow position:
               
               

               Alignm length:
               588
               

               Alignm identity:
               427
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 258
               

               Conread position:
               164-736
               

               Cow position:
               
               

               Alignm length:
               589
               

               Alignm identity:
               427
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 463
               

               Conread position:
               164-736
               

               Cow position:
               
               

               Alignm length:
               600
               

               Alignm identity:
               425
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               164-736
               

               Cow position:
               
               

               Alignm length:
               588
               

               Alignm identity:
               425
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 39
               

               Conread position:
               219-440
               

               Cow position:
               
               

               Alignm length:
               231
               

               Alignm identity:
               166
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               21, 152
               

               Conread position:
               219-813
               

               Cow position:
               
               

               Alignm length:
               625
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 306
               

               Conread position:
               224-708
               

               Cow position:
               
               

               Alignm length:
               502
               

               Alignm identity:
               308
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               55, 12
               

               Conread position:
               254-736
               

               Cow position:
               
               

               Alignm length:
               497
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 14
               

               Conread position:
               277-736
               

               Cow position:
               
               

               Alignm length:
               473
               

               Alignm identity:
               308
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               23, 85
               

               Conread position:
               297-790
               

               Cow position:
               
               

               Alignm length:
               499
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 29
               

               Conread position:
               300-721
               

               Cow position:
               
               

               Alignm length:
               428
               

               Alignm identity:
               283
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               18, 70
               

               Conread position:
               301-722
               

               Cow position:
               
               

               Alignm length:
               428
               

               Alignm identity:
               274
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               11, 72
               

               Conread position:
               301-735
               

               Cow position:
               
               

               Alignm length:
               437
               

               Alignm identity:
               287
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               7, 64
               

               Conread position:
               301-736
               

               Cow position:
               
               

               Alignm length:
               457
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 82
               

               Conread position:
               303-660
               

               Cow position:
               
               

               Alignm length:
               363
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 93
               

               Conread position:
               305-740
               

               Cow position:
               
               

               Alignm length:
               441
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 268
               

               Conread position:
               317-714
               

               Cow position:
               
               

               Alignm length:
               407
               

               Alignm identity:
               258
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               10, 44
               

               Conread position:
               320-736
               

               Cow position:
               
               

               Alignm length:
               428
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 283
               

               Conread position:
               327-736
               

               Cow position:
               
               

               Alignm length:
               413
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 284
               

               Conread position:
               331-638
               

               Cow position:
               
               

               Alignm length:
               311
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               15, 25
               

               Conread position:
               384-736
               

               Cow position:
               
               

               Alignm length:
               355
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               387-663
               

               Cow position:
               
               

               Alignm length:
               289
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               58, 5
               

               Conread position:
               392-720
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               435-732
               

               Cow position:
               
               

               Alignm length:
               301
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 99
               

               Conread position:
               438-736
               

               Cow position:
               
               

               Alignm length:
               299
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               454-736
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               27, 40
               

               Conread position:
               468-736
               

               Cow position:
               
               

               Alignm length:
               269
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               469-737
               

               Cow position:
               
               

               Alignm length:
               272
               

               Alignm identity:
               176
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               60, 19
               

               Conread position:
               511-736
               

               Cow position:
               
               

               Alignm length:
               227
               

               Alignm identity:
               172
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               110, 101
               

               Conread position:
               536-736
               

               Cow position:
               
               

               Alignm length:
               201
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               547-736
               

               Cow position:
               
               

               Alignm length:
               190
               

               Alignm identity:
               149
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               571-813
               

               Cow position:
               
               

               Alignm length:
               250
               

               Alignm identity:
               192
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               50, 38
               

               Conread position:
               576-734
               

               Cow position:
               
               

               Alignm length:
               159
               

               Alignm identity:
               118
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               597-735
               

               Cow position:
               
               

               Alignm length:
               141
               

               Alignm identity:
               115
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               24, 11
               

               Conread position:
               626-736
               

               Cow position:
               
               

               Alignm length:
               111
               

               Alignm identity:
               94
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               0, 0
               
Show alignments to all cow chromosomes.