Cow genome map
| Conread name: | Ss1.1-rspc011_k9.5 |
| Conread position: | 69-736 |
| Cow position: | chr23:15525160-15525840 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 9 |
| Conread position: | 69-736 |
| Cow position: | chr23:19489089-19489772 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 80 |
| Conread position: | 71-488 |
| Cow position: | chr23:19017239-19017676 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 291 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 32, 148 |
| Conread position: | 74-731 |
| Cow position: | chr23:34174721-34175402 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 70 |
| Conread position: | 74-740 |
| Cow position: | chr23:2796029-2795333 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 331 |
| Conread position: | 77-729 |
| Cow position: | chr23:5875214-5874559 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 73 |
| Conread position: | 77-736 |
| Cow position: | chr23:5779528-5778857 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 71 |
| Conread position: | 78-508 |
| Cow position: | chr23:22876090-22875632 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 181 |
| Conread position: | 78-707 |
| Cow position: | chr23:1025499-1024863 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 125 |
| Conread position: | 78-724 |
| Cow position: | chr23:22147721-22147032 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 577 |
| Conread position: | 78-732 |
| Cow position: | chr23:4276517-4277181 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 72 |
| Conread position: | 78-736 |
| Cow position: | chr23:16617296-16616616 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 29 |
| Conread position: | 84-440 |
| Cow position: | chr23:2765803-2765449 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 259 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 215, 66 |
| Conread position: | 84-730 |
| Cow position: | chr23:989076-988424 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 57 |
| Conread position: | 91-609 |
| Cow position: | chr23:16481779-16481270 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 351 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 114, 59 |
| Conread position: | 98-801 |
| Cow position: | chr23:4751605-4752291 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 14 |
| Conread position: | 150-736 |
| Cow position: | chr23:31446438-31447045 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 480 |
| Conread position: | 151-305 |
| Cow position: | chr23:14966345-14966187 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 151-424 |
| Cow position: | chr23:2715979-2716263 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 68, 236 |
| Conread position: | 151-682 |
| Cow position: | chr23:4815702-4816251 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 113 |
| Conread position: | 151-732 |
| Cow position: | chr23:19332773-19332183 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 282 |
| Conread position: | 151-736 |
| Cow position: | chr23:967720-967120 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 471 |
| Conread position: | 151-736 |
| Cow position: | chr23:2027498-2026889 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 338 |
| Conread position: | 151-736 |
| Cow position: | chr23:3882067-3881475 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 339 |
| Conread position: | 151-736 |
| Cow position: | chr23:4640997-4640394 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 151-736 |
| Cow position: | chr23:11778115-11778718 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 253 |
| Conread position: | 151-736 |
| Cow position: | chr23:27399131-27399733 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 246 |
| Conread position: | 151-736 |
| Cow position: | chr23:28913040-28913626 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 262 |
| Conread position: | 151-736 |
| Cow position: | chr23:30636674-30636071 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 461 |
| Conread position: | 151-736 |
| Cow position: | chr23:36031742-36031143 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 259 |
| Conread position: | 154-405 |
| Cow position: | chr23:1330655-1330392 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 154-429 |
| Cow position: | chr23:2574196-2574486 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 72, 205 |
| Conread position: | 154-724 |
| Cow position: | chr23:4434102-4434674 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 84 |
| Conread position: | 154-728 |
| Cow position: | chr23:4509737-4510299 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 252 |
| Conread position: | 154-736 |
| Cow position: | chr23:4359467-4360060 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 87 |
| Conread position: | 154-736 |
| Cow position: | chr23:7273292-7273861 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 42 |
| Conread position: | 155-723 |
| Cow position: | chr23:13508701-13509269 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 369 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 9, 49 |
| Conread position: | 157-473 |
| Cow position: | chr23:8980855-8980525 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 157-736 |
| Cow position: | chr23:15220259-15219661 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 164-736 |
| Cow position: | chr23:19950944-19950353 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 164-736 |
| Cow position: | chr23:28216932-28217520 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 348 |
| Conread position: | 164-737 |
| Cow position: | chr23:20301852-20302444 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 375 |
| Conread position: | 219-405 |
| Cow position: | chr23:16616167-16615971 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 219-736 |
| Cow position: | chr23:2313540-2313010 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 315 |
| Conread position: | 219-736 |
| Cow position: | chr23:15176772-15177301 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 371 |
| Conread position: | 250-736 |
| Cow position: | chr23:2757311-2757824 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 34 |
| Conread position: | 250-736 |
| Cow position: | chr23:4888411-4888903 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 206 |
| Conread position: | 299-711 |
| Cow position: | chr23:3013438-3013851 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 36 |
| Conread position: | 301-736 |
| Cow position: | chr23:14965953-14965522 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 208 |
| Conread position: | 301-736 |
| Cow position: | chr23:20156440-20155985 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 302-736 |
| Cow position: | chr23:14974768-14974333 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 305 |
| Conread position: | 303-729 |
| Cow position: | chr23:2524400-2523974 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 93 |
| Conread position: | 314-740 |
| Cow position: | chr23:26836113-26836508 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 279 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 212, 13 |
| Conread position: | 316-813 |
| Cow position: | chr23:38578100-38578590 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 46 |
| Conread position: | 317-713 |
| Cow position: | chr23:6216384-6216777 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 193 |
| Conread position: | 335-737 |
| Cow position: | chr23:25684231-25683832 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 31 |
| Conread position: | 371-736 |
| Cow position: | chr23:31591945-31591572 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 375-803 |
| Cow position: | chr23:29474686-29474255 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 329, 68 |
| Conread position: | 393-815 |
| Cow position: | chr23:1327575-1327154 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 152 |
| Conread position: | 416-713 |
| Cow position: | chr23:10903440-10903743 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 200 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 186, 33 |
| Conread position: | 427-730 |
| Cow position: | chr23:2716309-2716612 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 137 |
| Conread position: | 435-728 |
| Cow position: | chr23:2763832-2763550 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 444-714 |
| Cow position: | chr23:36211190-36210912 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 453-736 |
| Cow position: | chr23:31595290-31595006 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 160 |
| Conread position: | 455-736 |
| Cow position: | chr23:2574485-2574765 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 154 |
| Conread position: | 476-784 |
| Cow position: | chr23:19450228-19450525 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 145, 22 |
| Conread position: | 524-729 |
| Cow position: | chr23:2782412-2782213 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 532-813 |
| Cow position: | chr23:16615970-16615682 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 213 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 89, 122 |
| Conread position: | 538-736 |
| Cow position: | chr23:8980286-8980091 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 14, 39 |
| Conread position: | 554-813 |
| Cow position: | chr23:22875625-22875369 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 158, 62 |
| Conread position: | 555-736 |
| Cow position: | chr23:2765404-2765223 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 149 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 66, 57 |
| Conread position: | 568-736 |
| Cow position: | chr23:29452258-29452088 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 126, 0 |
Show alignments to all cow chromosomes.