Cow genome map
| Conread name: | Ss1.1-rspc011_k9.5 |
| Conread position: | 68-813 |
| Cow position: | chr24:36707474-36708242 (view UCSC Genome Browser custom track) |
| Alignm length: | 773 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 326 |
| Conread position: | 69-736 |
| Cow position: | chr24:148957-148303 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 69-736 |
| Cow position: | chr24:4415899-4415213 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 9 |
| Conread position: | 74-440 |
| Cow position: | chr24:13181696-13181332 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 22, 39 |
| Conread position: | 75-638 |
| Cow position: | chr24:39678065-39678627 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 331 |
| Conread position: | 75-804 |
| Cow position: | chr24:35841982-35841229 (view UCSC Genome Browser custom track) |
| Alignm length: | 769 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 173 |
| Conread position: | 77-593 |
| Cow position: | chr24:17187189-17187713 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 58 |
| Conread position: | 78-521 |
| Cow position: | chr24:12289093-12288628 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 59 |
| Conread position: | 78-637 |
| Cow position: | chr24:12224832-12224245 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 24 |
| Conread position: | 78-640 |
| Cow position: | chr24:6047891-6048478 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 370 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 63, 51 |
| Conread position: | 78-736 |
| Cow position: | chr24:6335321-6335998 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 196 |
| Conread position: | 78-736 |
| Cow position: | chr24:15392674-15392024 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 178 |
| Conread position: | 78-736 |
| Cow position: | chr24:33932991-33933682 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 564 |
| Conread position: | 78-740 |
| Cow position: | chr24:32330970-32331636 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 53 |
| Conread position: | 79-813 |
| Cow position: | chr24:16649650-16648917 (view UCSC Genome Browser custom track) |
| Alignm length: | 764 |
| Alignm identity: | 541 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 73 |
| Conread position: | 80-811 |
| Cow position: | chr24:1447205-1447956 (view UCSC Genome Browser custom track) |
| Alignm length: | 766 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 52 |
| Conread position: | 81-813 |
| Cow position: | chr24:12798124-12797367 (view UCSC Genome Browser custom track) |
| Alignm length: | 771 |
| Alignm identity: | 550 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 116 |
| Conread position: | 88-736 |
| Cow position: | chr24:12236716-12237370 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 62 |
| Conread position: | 94-346 |
| Cow position: | chr24:35991012-35990737 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 197 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 56, 49 |
| Conread position: | 97-736 |
| Cow position: | chr24:35838963-35838304 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 25 |
| Conread position: | 99-640 |
| Cow position: | chr24:14391056-14390511 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 52 |
| Conread position: | 112-824 |
| Cow position: | chr24:6537228-6537945 (view UCSC Genome Browser custom track) |
| Alignm length: | 739 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 97 |
| Conread position: | 136-736 |
| Cow position: | chr24:6433938-6434556 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 36 |
| Conread position: | 150-457 |
| Cow position: | chr24:13021381-13021705 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 229 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 150-736 |
| Cow position: | chr24:9189021-9188416 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 482 |
| Conread position: | 150-760 |
| Cow position: | chr24:44017255-44017886 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 480 |
| Conread position: | 151-297 |
| Cow position: | chr24:29186519-29186669 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 151-736 |
| Cow position: | chr24:12085913-12086514 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 361 |
| Conread position: | 151-736 |
| Cow position: | chr24:19833097-19833701 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 154-305 |
| Cow position: | chr24:37216443-37216598 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 154-344 |
| Cow position: | chr24:37301357-37301159 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 111, 80 |
| Conread position: | 154-417 |
| Cow position: | chr24:12207858-12208127 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 62, 115 |
| Conread position: | 154-524 |
| Cow position: | chr24:13531818-13531432 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 202 |
| Conread position: | 154-656 |
| Cow position: | chr24:12131765-12131250 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 254 |
| Conread position: | 154-680 |
| Cow position: | chr24:12161595-12162134 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 137 |
| Conread position: | 154-736 |
| Cow position: | chr24:6145076-6145684 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 485 |
| Conread position: | 154-736 |
| Cow position: | chr24:12114314-12113731 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 196 |
| Conread position: | 154-813 |
| Cow position: | chr24:36560355-36559685 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 129 |
| Conread position: | 154-817 |
| Cow position: | chr24:6351909-6352586 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 456 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 54, 47 |
| Conread position: | 157-594 |
| Cow position: | chr24:36296894-36297342 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 295 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 50, 43 |
| Conread position: | 157-736 |
| Cow position: | chr24:14384890-14384299 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 54 |
| Conread position: | 159-815 |
| Cow position: | chr24:12567976-12568633 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 27 |
| Conread position: | 164-577 |
| Cow position: | chr24:6645144-6645570 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 245 |
| Conread position: | 164-584 |
| Cow position: | chr24:7060833-7061264 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 79 |
| Conread position: | 164-736 |
| Cow position: | chr24:6025370-6024782 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 464 |
| Conread position: | 164-736 |
| Cow position: | chr24:6083743-6084333 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 463 |
| Conread position: | 164-736 |
| Cow position: | chr24:12485591-12485001 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 386 |
| Conread position: | 164-736 |
| Cow position: | chr24:13187921-13188489 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 79 |
| Conread position: | 164-736 |
| Cow position: | chr24:22792903-22793488 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 420 |
| Conread position: | 164-736 |
| Cow position: | chr24:33739616-33739024 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 74 |
| Conread position: | 167-579 |
| Cow position: | chr24:2635849-2636276 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 369 |
| Conread position: | 207-732 |
| Cow position: | chr24:8029927-8030463 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 34 |
| Conread position: | 250-736 |
| Cow position: | chr24:16084844-16084343 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 289-549 |
| Cow position: | chr24:35987482-35987228 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 17, 27 |
| Conread position: | 300-733 |
| Cow position: | chr24:14885362-14884941 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 292 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 257, 90 |
| Conread position: | 301-711 |
| Cow position: | chr24:22952015-22952427 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 301-736 |
| Cow position: | chr24:9092394-9091969 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 208 |
| Conread position: | 301-736 |
| Cow position: | chr24:12335913-12335459 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 442 |
| Conread position: | 301-736 |
| Cow position: | chr24:40548756-40549190 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 209 |
| Conread position: | 303-733 |
| Cow position: | chr24:14584975-14585389 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 80 |
| Conread position: | 316-633 |
| Cow position: | chr24:40654283-40654599 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 22, 62 |
| Conread position: | 319-565 |
| Cow position: | chr24:14332995-14333244 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 12, 167 |
| Conread position: | 324-635 |
| Cow position: | chr24:38635663-38635969 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 47 |
| Conread position: | 337-739 |
| Cow position: | chr24:37216919-37217318 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 237 |
| Conread position: | 365-739 |
| Cow position: | chr24:6660665-6660280 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 168 |
| Conread position: | 404-736 |
| Cow position: | chr24:17696985-17696662 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 22 |
| Conread position: | 471-736 |
| Cow position: | chr24:29187334-29187599 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 474-721 |
| Cow position: | chr24:12146080-12145830 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 137, 37 |
| Conread position: | 479-813 |
| Cow position: | chr24:1438129-1437798 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 30, 132 |
| Conread position: | 481-813 |
| Cow position: | chr24:7091534-7091197 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 239 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 132, 40 |
| Conread position: | 487-813 |
| Cow position: | chr24:12288324-12287993 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 96, 20 |
| Conread position: | 499-711 |
| Cow position: | chr24:13524184-13524395 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 122, 77 |
| Conread position: | 531-721 |
| Cow position: | chr24:6510721-6510530 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 170, 0 |
| Conread position: | 557-737 |
| Cow position: | chr24:8152868-8152690 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 68, 116 |
| Conread position: | 566-736 |
| Cow position: | chr24:6645849-6646019 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 55, 39 |
| Conread position: | 570-736 |
| Cow position: | chr24:7061539-7061705 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 51, 42 |
| Conread position: | 578-732 |
| Cow position: | chr24:5993071-5992917 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 43, 34 |
Show alignments to all cow chromosomes.