Cow genome map
| Conread name: | Ss1.1-rspc011_k9.5 |
| Conread position: | 65-677 |
| Cow position: | chr25:17615670-17615058 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 382 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 29, 37 |
| Conread position: | 69-462 |
| Cow position: | chr25:18411710-18411290 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 301 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 83, 179 |
| Conread position: | 69-741 |
| Cow position: | chr25:25506241-25506926 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 72-592 |
| Cow position: | chr25:17561002-17560477 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 32 |
| Conread position: | 78-619 |
| Cow position: | chr25:33991450-33990905 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 31 |
| Conread position: | 78-736 |
| Cow position: | chr25:17469092-17468429 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 53 |
| Conread position: | 78-736 |
| Cow position: | chr25:26278857-26279531 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 65 |
| Conread position: | 78-813 |
| Cow position: | chr25:18092603-18093368 (view UCSC Genome Browser custom track) |
| Alignm length: | 779 |
| Alignm identity: | 557 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 310 |
| Conread position: | 81-736 |
| Cow position: | chr25:11375743-11375076 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 70 |
| Conread position: | 81-736 |
| Cow position: | chr25:18060990-18060330 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 51 |
| Conread position: | 89-803 |
| Cow position: | chr25:12759993-12759251 (view UCSC Genome Browser custom track) |
| Alignm length: | 748 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 28 |
| Conread position: | 93-736 |
| Cow position: | chr25:8674522-8675188 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 91 |
| Conread position: | 97-717 |
| Cow position: | chr25:18028008-18027372 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 53 |
| Conread position: | 97-735 |
| Cow position: | chr25:14015797-14016436 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 53 |
| Conread position: | 109-736 |
| Cow position: | chr25:18276194-18275556 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 42 |
| Conread position: | 150-736 |
| Cow position: | chr25:35362753-35362157 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 347 |
| Conread position: | 151-584 |
| Cow position: | chr25:26866893-26867362 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 309 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 151-736 |
| Cow position: | chr25:22147165-22147767 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 132 |
| Conread position: | 151-736 |
| Cow position: | chr25:34347321-34346745 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 114 |
| Conread position: | 154-431 |
| Cow position: | chr25:17563231-17562955 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 68, 126 |
| Conread position: | 154-713 |
| Cow position: | chr25:20494034-20494598 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 372 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 59, 210 |
| Conread position: | 154-736 |
| Cow position: | chr25:18890341-18889743 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 14 |
| Conread position: | 154-736 |
| Cow position: | chr25:34656772-34656174 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 354 |
| Conread position: | 154-815 |
| Cow position: | chr25:18255684-18255008 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 252 |
| Conread position: | 157-736 |
| Cow position: | chr25:13780712-13781302 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 191 |
| Conread position: | 157-811 |
| Cow position: | chr25:19288668-19287990 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 454 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 50, 42 |
| Conread position: | 160-813 |
| Cow position: | chr25:11933838-11933171 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 57 |
| Conread position: | 163-732 |
| Cow position: | chr25:20629259-20629834 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 417 |
| Conread position: | 164-736 |
| Cow position: | chr25:17589860-17589282 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 81 |
| Conread position: | 164-736 |
| Cow position: | chr25:19916772-19917356 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 80 |
| Conread position: | 164-736 |
| Cow position: | chr25:20777215-20776630 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 235 |
| Conread position: | 164-737 |
| Cow position: | chr25:26921914-26922490 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 183 |
| Conread position: | 219-732 |
| Cow position: | chr25:36240292-36240817 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 19 |
| Conread position: | 253-736 |
| Cow position: | chr25:32579743-32580237 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 113 |
| Conread position: | 299-492 |
| Cow position: | chr25:18302624-18302819 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 301-641 |
| Cow position: | chr25:28030782-28030439 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 69, 83 |
| Conread position: | 303-549 |
| Cow position: | chr25:18173200-18173449 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 183 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 307-723 |
| Cow position: | chr25:24218270-24217861 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 139, 171 |
| Conread position: | 317-736 |
| Cow position: | chr25:12942849-12942428 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 287 |
| Conread position: | 354-813 |
| Cow position: | chr25:23345451-23344992 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 320 |
| Conread position: | 367-736 |
| Cow position: | chr25:33665967-33665601 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 96 |
| Conread position: | 397-732 |
| Cow position: | chr25:27022635-27022298 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 420-738 |
| Cow position: | chr25:18421623-18421944 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 24, 95 |
| Conread position: | 438-736 |
| Cow position: | chr25:18195124-18194826 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 478-813 |
| Cow position: | chr25:33243844-33244167 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 240 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 143, 77 |
| Conread position: | 497-736 |
| Cow position: | chr25:18303434-18303672 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 176 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 124, 112 |
| Conread position: | 511-736 |
| Cow position: | chr25:9544112-9544333 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 511-736 |
| Cow position: | chr25:34014442-34014216 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 15, 143 |
| Conread position: | 617-736 |
| Cow position: | chr25:6172056-6172175 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 620-732 |
| Cow position: | chr25:17560476-17560364 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.