Cow genome map

Conread name: Ss1.1-rspc011_k9.5

Conread position: 65-677
Cow position: chr25:17615670-17615058 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 382
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 29, 37

Conread position: 69-462
Cow position: chr25:18411710-18411290 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 301
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 83, 179

Conread position: 69-741
Cow position: chr25:25506241-25506926 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 28

Conread position: 72-592
Cow position: chr25:17561002-17560477 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 32

Conread position: 78-619
Cow position: chr25:33991450-33990905 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 31

Conread position: 78-736
Cow position: chr25:17469092-17468429 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 53

Conread position: 78-736
Cow position: chr25:26278857-26279531 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 65

Conread position: 78-813
Cow position: chr25:18092603-18093368 (view UCSC Genome Browser custom track)
Alignm length: 779
Alignm identity: 557
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 310

Conread position: 81-736
Cow position: chr25:11375743-11375076 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 70

Conread position: 81-736
Cow position: chr25:18060990-18060330 (view UCSC Genome Browser custom track)
Alignm length: 684
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 51

Conread position: 89-803
Cow position: chr25:12759993-12759251 (view UCSC Genome Browser custom track)
Alignm length: 748
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 28

Conread position: 93-736
Cow position: chr25:8674522-8675188 (view UCSC Genome Browser custom track)
Alignm length: 668
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 91

Conread position: 97-717
Cow position: chr25:18028008-18027372 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 53

Conread position: 97-735
Cow position: chr25:14015797-14016436 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 53

Conread position: 109-736
Cow position: chr25:18276194-18275556 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 42

Conread position: 150-736
Cow position: chr25:35362753-35362157 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 347

Conread position: 151-584
Cow position: chr25:26866893-26867362 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 309
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 68, 0

Conread position: 151-736
Cow position: chr25:22147165-22147767 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 132

Conread position: 151-736
Cow position: chr25:34347321-34346745 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 114

Conread position: 154-431
Cow position: chr25:17563231-17562955 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 192
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 68, 126

Conread position: 154-713
Cow position: chr25:20494034-20494598 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 372
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 59, 210

Conread position: 154-736
Cow position: chr25:18890341-18889743 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 14

Conread position: 154-736
Cow position: chr25:34656772-34656174 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 354

Conread position: 154-815
Cow position: chr25:18255684-18255008 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 252

Conread position: 157-736
Cow position: chr25:13780712-13781302 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 191

Conread position: 157-811
Cow position: chr25:19288668-19287990 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 454
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 50, 42

Conread position: 160-813
Cow position: chr25:11933838-11933171 (view UCSC Genome Browser custom track)
Alignm length: 682
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 57

Conread position: 163-732
Cow position: chr25:20629259-20629834 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 417

Conread position: 164-736
Cow position: chr25:17589860-17589282 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 81

Conread position: 164-736
Cow position: chr25:19916772-19917356 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 80

Conread position: 164-736
Cow position: chr25:20777215-20776630 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 235

Conread position: 164-737
Cow position: chr25:26921914-26922490 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 183

Conread position: 219-732
Cow position: chr25:36240292-36240817 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 19

Conread position: 253-736
Cow position: chr25:32579743-32580237 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 113

Conread position: 299-492
Cow position: chr25:18302624-18302819 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 145
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 140, 0

Conread position: 301-641
Cow position: chr25:28030782-28030439 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 223
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 69, 83

Conread position: 303-549
Cow position: chr25:18173200-18173449 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 183
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 138, 0

Conread position: 307-723
Cow position: chr25:24218270-24217861 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 257
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 139, 171

Conread position: 317-736
Cow position: chr25:12942849-12942428 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 287

Conread position: 354-813
Cow position: chr25:23345451-23344992 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 320

Conread position: 367-736
Cow position: chr25:33665967-33665601 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 96

Conread position: 397-732
Cow position: chr25:27022635-27022298 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 420-738
Cow position: chr25:18421623-18421944 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 219
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 24, 95

Conread position: 438-736
Cow position: chr25:18195124-18194826 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 478-813
Cow position: chr25:33243844-33244167 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 240
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 143, 77

Conread position: 497-736
Cow position: chr25:18303434-18303672 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 176
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 124, 112

Conread position: 511-736
Cow position: chr25:9544112-9544333 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 511-736
Cow position: chr25:34014442-34014216 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 167
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 15, 143

Conread position: 617-736
Cow position: chr25:6172056-6172175 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 93
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 620-732
Cow position: chr25:17560476-17560364 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 100
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.