Cow genome map

Conread name: Ss1.1-rspc011_k9.5

Conread position: 78-553
Cow position: chr27:25999508-25999020 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 28

Conread position: 78-736
Cow position: chr27:9993653-9992973 (view UCSC Genome Browser custom track)
Alignm length: 684
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 105

Conread position: 84-736
Cow position: chr27:16438899-16439558 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 66

Conread position: 84-736
Cow position: chr27:27051229-27051914 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 38

Conread position: 148-736
Cow position: chr27:892837-893437 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 343

Conread position: 151-732
Cow position: chr27:14460828-14460230 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 133

Conread position: 151-732
Cow position: chr27:26324442-26325041 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 344

Conread position: 151-736
Cow position: chr27:1208980-1209581 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 463

Conread position: 151-736
Cow position: chr27:27662522-27663125 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 542

Conread position: 151-737
Cow position: chr27:23334791-23335410 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 261

Conread position: 152-736
Cow position: chr27:25805251-25804666 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 34

Conread position: 153-551
Cow position: chr27:3996738-3996330 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 274
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 147, 47

Conread position: 154-410
Cow position: chr27:25116884-25117146 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 182
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 147, 84

Conread position: 154-736
Cow position: chr27:15278434-15277843 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 260

Conread position: 154-736
Cow position: chr27:25002902-25002306 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 331

Conread position: 154-813
Cow position: chr27:26556344-26555689 (view UCSC Genome Browser custom track)
Alignm length: 683
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 116

Conread position: 157-636
Cow position: chr27:28890367-28890855 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 314
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 33, 28

Conread position: 157-736
Cow position: chr27:5910501-5911093 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 115

Conread position: 164-729
Cow position: chr27:2364392-2364974 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 270

Conread position: 164-736
Cow position: chr27:15540969-15541559 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 463

Conread position: 164-736
Cow position: chr27:16034751-16034164 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 91

Conread position: 228-740
Cow position: chr27:26227009-26227522 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 102

Conread position: 268-815
Cow position: chr27:6006775-6007323 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 372
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 38, 135

Conread position: 299-722
Cow position: chr27:6013229-6013644 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 274
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 11, 17

Conread position: 300-658
Cow position: chr27:25160482-25160845 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 228
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 10, 15

Conread position: 341-488
Cow position: chr27:8561422-8561574 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 23, 0

Conread position: 366-825
Cow position: chr27:22316443-22316912 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 296
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 83, 5

Conread position: 378-736
Cow position: chr27:16432295-16432646 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 380-736
Cow position: chr27:27753324-27752966 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 417-737
Cow position: chr27:29565465-29565146 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 203
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 37, 52

Conread position: 427-811
Cow position: chr27:26035136-26034747 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 250
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 18, 269

Conread position: 438-727
Cow position: chr27:27197437-27197164 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 205
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 94, 80

Conread position: 444-736
Cow position: chr27:15638417-15638127 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 0

Conread position: 532-813
Cow position: chr27:8561572-8561859 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 205
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 194, 38

Conread position: 591-736
Cow position: chr27:28078533-28078677 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 109
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 34, 63

Show alignments to all cow chromosomes.