Cow genome map


           Conread name:
           Ss1.1-rspc011_k9.5
        

               Conread position:
               63-815
               

               Cow position:
               
               

               Alignm length:
               771
               

               Alignm identity:
               538
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 17
               

               Conread position:
               69-644
               

               Cow position:
               
               

               Alignm length:
               594
               

               Alignm identity:
               416
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 9
               

               Conread position:
               69-736
               

               Cow position:
               
               

               Alignm length:
               691
               

               Alignm identity:
               497
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 9
               

               Conread position:
               74-732
               

               Cow position:
               
               

               Alignm length:
               686
               

               Alignm identity:
               498
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 24
               

               Conread position:
               75-732
               

               Cow position:
               
               

               Alignm length:
               676
               

               Alignm identity:
               500
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 56
               

               Conread position:
               75-732
               

               Cow position:
               
               

               Alignm length:
               697
               

               Alignm identity:
               451
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 49
               

               Conread position:
               78-305
               

               Cow position:
               
               

               Alignm length:
               239
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               78-523
               

               Cow position:
               
               

               Alignm length:
               460
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 72
               

               Conread position:
               78-732
               

               Cow position:
               
               

               Alignm length:
               678
               

               Alignm identity:
               493
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 48
               

               Conread position:
               78-736
               

               Cow position:
               
               

               Alignm length:
               674
               

               Alignm identity:
               502
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 70
               

               Conread position:
               78-736
               

               Cow position:
               
               

               Alignm length:
               679
               

               Alignm identity:
               476
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 106
               

               Conread position:
               78-736
               

               Cow position:
               
               

               Alignm length:
               675
               

               Alignm identity:
               464
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 106
               

               Conread position:
               78-763
               

               Cow position:
               
               

               Alignm length:
               700
               

               Alignm identity:
               435
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 36
               

               Conread position:
               79-487
               

               Cow position:
               
               

               Alignm length:
               432
               

               Alignm identity:
               286
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               88, 323
               

               Conread position:
               80-724
               

               Cow position:
               
               

               Alignm length:
               651
               

               Alignm identity:
               400
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               110, 179
               

               Conread position:
               88-696
               

               Cow position:
               
               

               Alignm length:
               638
               

               Alignm identity:
               401
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               125, 62
               

               Conread position:
               91-812
               

               Cow position:
               
               

               Alignm length:
               766
               

               Alignm identity:
               533
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 262
               

               Conread position:
               94-737
               

               Cow position:
               
               

               Alignm length:
               651
               

               Alignm identity:
               461
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 12
               

               Conread position:
               97-821
               

               Cow position:
               
               

               Alignm length:
               764
               

               Alignm identity:
               544
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 325
               

               Conread position:
               99-631
               

               Cow position:
               
               

               Alignm length:
               548
               

               Alignm identity:
               384
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 176
               

               Conread position:
               99-736
               

               Cow position:
               
               

               Alignm length:
               658
               

               Alignm identity:
               481
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 51
               

               Conread position:
               99-812
               

               Cow position:
               
               

               Alignm length:
               752
               

               Alignm identity:
               552
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 306
               

               Conread position:
               148-490
               

               Cow position:
               
               

               Alignm length:
               364
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 267
               

               Conread position:
               150-593
               

               Cow position:
               
               

               Alignm length:
               456
               

               Alignm identity:
               286
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               6, 289
               

               Conread position:
               150-736
               

               Cow position:
               
               

               Alignm length:
               603
               

               Alignm identity:
               433
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 94
               

               Conread position:
               151-390
               

               Cow position:
               
               

               Alignm length:
               256
               

               Alignm identity:
               185
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               68, 250
               

               Conread position:
               151-454
               

               Cow position:
               
               

               Alignm length:
               322
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 220
               

               Conread position:
               151-454
               

               Cow position:
               
               

               Alignm length:
               322
               

               Alignm identity:
               232
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               68, 236
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               604
               

               Alignm identity:
               444
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 195
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               603
               

               Alignm identity:
               439
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               603
               

               Alignm identity:
               438
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 261
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               606
               

               Alignm identity:
               433
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 324
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               597
               

               Alignm identity:
               430
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 243
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               602
               

               Alignm identity:
               437
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 68
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               604
               

               Alignm identity:
               438
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 518
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               604
               

               Alignm identity:
               429
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               604
               

               Alignm identity:
               437
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 203
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               604
               

               Alignm identity:
               441
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               605
               

               Alignm identity:
               445
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 261
               

               Conread position:
               152-565
               

               Cow position:
               
               

               Alignm length:
               427
               

               Alignm identity:
               262
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               55, 49
               

               Conread position:
               152-736
               

               Cow position:
               
               

               Alignm length:
               607
               

               Alignm identity:
               441
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 481
               

               Conread position:
               153-699
               

               Cow position:
               
               

               Alignm length:
               556
               

               Alignm identity:
               339
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               39, 16
               

               Conread position:
               154-515
               

               Cow position:
               
               

               Alignm length:
               391
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 146
               

               Conread position:
               154-736
               

               Cow position:
               
               

               Alignm length:
               597
               

               Alignm identity:
               445
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 118
               

               Conread position:
               154-736
               

               Cow position:
               
               

               Alignm length:
               607
               

               Alignm identity:
               447
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 64
               

               Conread position:
               154-736
               

               Cow position:
               
               

               Alignm length:
               603
               

               Alignm identity:
               439
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               154-736
               

               Cow position:
               
               

               Alignm length:
               605
               

               Alignm identity:
               438
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 377
               

               Conread position:
               157-428
               

               Cow position:
               
               

               Alignm length:
               280
               

               Alignm identity:
               196
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               67, 83
               

               Conread position:
               164-619
               

               Cow position:
               
               

               Alignm length:
               472
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 461
               

               Conread position:
               164-724
               

               Cow position:
               
               

               Alignm length:
               576
               

               Alignm identity:
               403
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 79
               

               Conread position:
               164-736
               

               Cow position:
               
               

               Alignm length:
               588
               

               Alignm identity:
               424
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 39
               

               Conread position:
               164-736
               

               Cow position:
               
               

               Alignm length:
               590
               

               Alignm identity:
               413
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 72
               

               Conread position:
               164-736
               

               Cow position:
               
               

               Alignm length:
               591
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 52
               

               Conread position:
               164-736
               

               Cow position:
               
               

               Alignm length:
               591
               

               Alignm identity:
               433
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 312
               

               Conread position:
               180-736
               

               Cow position:
               
               

               Alignm length:
               571
               

               Alignm identity:
               435
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 46
               

               Conread position:
               250-440
               

               Cow position:
               
               

               Alignm length:
               204
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               250-582
               

               Cow position:
               
               

               Alignm length:
               347
               

               Alignm identity:
               246
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               50, 229
               

               Conread position:
               250-736
               

               Cow position:
               
               

               Alignm length:
               501
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 140
               

               Conread position:
               250-812
               

               Cow position:
               
               

               Alignm length:
               595
               

               Alignm identity:
               412
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 114
               

               Conread position:
               253-740
               

               Cow position:
               
               

               Alignm length:
               503
               

               Alignm identity:
               374
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 407
               

               Conread position:
               255-736
               

               Cow position:
               
               

               Alignm length:
               485
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               190, 9
               

               Conread position:
               301-736
               

               Cow position:
               
               

               Alignm length:
               438
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 218
               

               Conread position:
               301-736
               

               Cow position:
               
               

               Alignm length:
               438
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 70
               

               Conread position:
               303-812
               

               Cow position:
               
               

               Alignm length:
               517
               

               Alignm identity:
               314
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               23, 10
               

               Conread position:
               304-594
               

               Cow position:
               
               

               Alignm length:
               300
               

               Alignm identity:
               204
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               23, 85
               

               Conread position:
               313-491
               

               Cow position:
               
               

               Alignm length:
               182
               

               Alignm identity:
               135
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               44, 84
               

               Conread position:
               326-813
               

               Cow position:
               
               

               Alignm length:
               519
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 71
               

               Conread position:
               343-736
               

               Cow position:
               
               

               Alignm length:
               397
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 53
               

               Conread position:
               364-554
               

               Cow position:
               
               

               Alignm length:
               193
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               80, 145
               

               Conread position:
               364-735
               

               Cow position:
               
               

               Alignm length:
               375
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 250
               

               Conread position:
               397-736
               

               Cow position:
               
               

               Alignm length:
               342
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 59
               

               Conread position:
               441-736
               

               Cow position:
               
               

               Alignm length:
               297
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               180, 99
               

               Conread position:
               444-736
               

               Cow position:
               
               

               Alignm length:
               294
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               230, 0
               

               Conread position:
               444-736
               

               Cow position:
               
               

               Alignm length:
               293
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               466-736
               

               Cow position:
               
               

               Alignm length:
               271
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               466-821
               

               Cow position:
               
               

               Alignm length:
               362
               

               Alignm identity:
               238
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               44, 72
               

               Conread position:
               495-813
               

               Cow position:
               
               

               Alignm length:
               323
               

               Alignm identity:
               224
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               238, 98
               

               Conread position:
               498-736
               

               Cow position:
               
               

               Alignm length:
               240
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 114
               

               Conread position:
               499-813
               

               Cow position:
               
               

               Alignm length:
               328
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               239, 73
               

               Conread position:
               501-740
               

               Cow position:
               
               

               Alignm length:
               242
               

               Alignm identity:
               168
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               120, 111
               

               Conread position:
               509-736
               

               Cow position:
               
               

               Alignm length:
               236
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               112, 103
               

               Conread position:
               515-711
               

               Cow position:
               
               

               Alignm length:
               197
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               132, 0
               

               Conread position:
               537-824
               

               Cow position:
               
               

               Alignm length:
               302
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               78, 239
               

               Conread position:
               544-736
               

               Cow position:
               
               

               Alignm length:
               194
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               77, 68
               

               Conread position:
               550-729
               

               Cow position:
               
               

               Alignm length:
               183
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               71, 11
               

               Conread position:
               564-736
               

               Cow position:
               
               

               Alignm length:
               174
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               57, 48
               

               Conread position:
               565-813
               

               Cow position:
               
               

               Alignm length:
               260
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               175, 69
               

               Conread position:
               572-736
               

               Cow position:
               
               

               Alignm length:
               166
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               49, 37
               

               Conread position:
               597-736
               

               Cow position:
               
               

               Alignm length:
               141
               

               Alignm identity:
               107
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               24, 15
               

               Conread position:
               600-736
               

               Cow position:
               
               

               Alignm length:
               139
               

               Alignm identity:
               110
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               21, 12
               

               Conread position:
               610-736
               

               Cow position:
               
               

               Alignm length:
               127
               

               Alignm identity:
               98
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               624-736
               

               Cow position:
               
               

               Alignm length:
               113
               

               Alignm identity:
               93
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               10, 0
               
Show alignments to all cow chromosomes.