Cow genome map

Conread name: Ss1.1-rspc011_k9.5

Conread position: 63-815
Cow position: chr28:10619513-10618757 (view UCSC Genome Browser custom track)
Alignm length: 771
Alignm identity: 538
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 17

Conread position: 69-644
Cow position: chr28:26426676-26426099 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 9

Conread position: 69-736
Cow position: chr28:10582396-10581712 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 9

Conread position: 74-732
Cow position: chr28:9155679-9155015 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 24

Conread position: 75-732
Cow position: chr28:8721844-8721179 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 56

Conread position: 75-732
Cow position: chr28:34648522-34649214 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 49

Conread position: 78-305
Cow position: chr28:5115488-5115250 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 167
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 65, 0

Conread position: 78-523
Cow position: chr28:15681496-15681948 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 72

Conread position: 78-732
Cow position: chr28:7001584-7002260 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 48

Conread position: 78-736
Cow position: chr28:2591526-2592189 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 70

Conread position: 78-736
Cow position: chr28:3193193-3192517 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 106

Conread position: 78-736
Cow position: chr28:33251926-33252586 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 106

Conread position: 78-763
Cow position: chr28:18102321-18101639 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 36

Conread position: 79-487
Cow position: chr28:22827647-22828073 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 286
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 88, 323

Conread position: 80-724
Cow position: chr28:11027332-11026703 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 400
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 110, 179

Conread position: 88-696
Cow position: chr28:15585010-15585630 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 401
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 125, 62

Conread position: 91-812
Cow position: chr28:21325388-21326138 (view UCSC Genome Browser custom track)
Alignm length: 766
Alignm identity: 533
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 262

Conread position: 94-737
Cow position: chr28:24667214-24667855 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 12

Conread position: 97-821
Cow position: chr28:5812314-5813053 (view UCSC Genome Browser custom track)
Alignm length: 764
Alignm identity: 544
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 325

Conread position: 99-631
Cow position: chr28:7816849-7817373 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 176

Conread position: 99-736
Cow position: chr28:9953759-9954407 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 51

Conread position: 99-812
Cow position: chr28:21358624-21359361 (view UCSC Genome Browser custom track)
Alignm length: 752
Alignm identity: 552
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 306

Conread position: 148-490
Cow position: chr28:29819236-29819597 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 267

Conread position: 150-593
Cow position: chr28:10591702-10591255 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 286
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 6, 289

Conread position: 150-736
Cow position: chr28:24587110-24587709 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 94

Conread position: 151-390
Cow position: chr28:13522399-13522653 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 185
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 68, 250

Conread position: 151-454
Cow position: chr28:1168492-1168174 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 220

Conread position: 151-454
Cow position: chr28:34593515-34593832 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 232
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 68, 236

Conread position: 151-736
Cow position: chr28:782070-782669 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 195

Conread position: 151-736
Cow position: chr28:1815195-1814593 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 151-736
Cow position: chr28:2083276-2083870 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 261

Conread position: 151-736
Cow position: chr28:5565533-5566128 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 324

Conread position: 151-736
Cow position: chr28:12149994-12150578 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 243

Conread position: 151-736
Cow position: chr28:13459646-13460244 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 68

Conread position: 151-736
Cow position: chr28:14705999-14705397 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 518

Conread position: 151-736
Cow position: chr28:17388153-17388756 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 151-736
Cow position: chr28:17667840-17667239 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 203

Conread position: 151-736
Cow position: chr28:22261479-22260876 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 151-736
Cow position: chr28:32792707-32792106 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 261

Conread position: 152-565
Cow position: chr28:32331728-32331303 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 262
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 55, 49

Conread position: 152-736
Cow position: chr28:13441207-13440602 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 481

Conread position: 153-699
Cow position: chr28:17935346-17934801 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 339
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 39, 16

Conread position: 154-515
Cow position: chr28:17330857-17330473 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 146

Conread position: 154-736
Cow position: chr28:1387715-1387126 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 118

Conread position: 154-736
Cow position: chr28:7901034-7901636 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 64

Conread position: 154-736
Cow position: chr28:8378241-8378843 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 0

Conread position: 154-736
Cow position: chr28:18520786-18520185 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 377

Conread position: 157-428
Cow position: chr28:5796504-5796780 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 196
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 67, 83

Conread position: 164-619
Cow position: chr28:15950666-15951136 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 461

Conread position: 164-724
Cow position: chr28:15920774-15920202 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 79

Conread position: 164-736
Cow position: chr28:1952827-1953404 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 39

Conread position: 164-736
Cow position: chr28:6780642-6780059 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 72

Conread position: 164-736
Cow position: chr28:7821950-7822532 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 52

Conread position: 164-736
Cow position: chr28:14750233-14750821 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 312

Conread position: 180-736
Cow position: chr28:4381108-4380570 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 46

Conread position: 250-440
Cow position: chr28:5752102-5751899 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 157
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 50, 0

Conread position: 250-582
Cow position: chr28:24652066-24652401 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 246
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 50, 229

Conread position: 250-736
Cow position: chr28:1504630-1505126 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 140

Conread position: 250-812
Cow position: chr28:2989907-2989347 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 114

Conread position: 253-740
Cow position: chr28:15378214-15377713 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 407

Conread position: 255-736
Cow position: chr28:7740298-7740755 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 9

Conread position: 301-736
Cow position: chr28:5114962-5114537 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 218

Conread position: 301-736
Cow position: chr28:12410372-12409951 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 70

Conread position: 303-812
Cow position: chr28:22065897-22065394 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 314
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 23, 10

Conread position: 304-594
Cow position: chr28:6657467-6657173 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 204
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 23, 85

Conread position: 313-491
Cow position: chr28:15035646-15035467 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 135
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 44, 84

Conread position: 326-813
Cow position: chr28:7790435-7789923 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 71

Conread position: 343-736
Cow position: chr28:9137169-9136777 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 53

Conread position: 364-554
Cow position: chr28:22233788-22233597 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 140
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 80, 145

Conread position: 364-735
Cow position: chr28:2724990-2724617 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 250

Conread position: 397-736
Cow position: chr28:12233063-12232727 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 59

Conread position: 441-736
Cow position: chr28:1167902-1167607 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 99

Conread position: 444-736
Cow position: chr28:5751724-5751431 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 0

Conread position: 444-736
Cow position: chr28:34593961-34594253 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 466-736
Cow position: chr28:29819738-29820008 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 466-821
Cow position: chr28:17311948-17312294 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 238
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 44, 72

Conread position: 495-813
Cow position: chr28:2846139-2845819 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 224
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 238, 98

Conread position: 498-736
Cow position: chr28:1931948-1931710 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 114

Conread position: 499-813
Cow position: chr28:5797470-5797794 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 73

Conread position: 501-740
Cow position: chr28:18181110-18180877 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 168
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 120, 111

Conread position: 509-736
Cow position: chr28:17324303-17324070 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 178
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 112, 103

Conread position: 515-711
Cow position: chr28:5800677-5800868 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 138
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 132, 0

Conread position: 537-824
Cow position: chr28:10463077-10462777 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 202
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 78, 239

Conread position: 544-736
Cow position: chr28:485480-485288 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 148
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 77, 68

Conread position: 550-729
Cow position: chr28:22828104-22828283 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 144
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 71, 11

Conread position: 564-736
Cow position: chr28:22233295-22233125 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 134
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 57, 48

Conread position: 565-813
Cow position: chr28:10071088-10071340 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 188
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 175, 69

Conread position: 572-736
Cow position: chr28:13490261-13490425 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 136
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 49, 37

Conread position: 597-736
Cow position: chr28:30805552-30805413 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 24, 15

Conread position: 600-736
Cow position: chr28:6539123-6538987 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 21, 12

Conread position: 610-736
Cow position: chr28:26426103-26425977 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 624-736
Cow position: chr28:24652952-24652842 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 93
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 10, 0

Show alignments to all cow chromosomes.