Cow genome map
Conread name: | Ss1.1-rspc011_k9.5 |
Conread position: | 55-641 |
Cow position: | chr29:24199078-24198474 (view UCSC Genome Browser custom track) |
Alignm length: | 608 |
Alignm identity: | 379 |
Alignm E-value: | 5.00264e-43 |
Alignm gaps (pig, cow): | 41, 113 |
Conread position: | 66-738 |
Cow position: | chr29:14013017-14013707 (view UCSC Genome Browser custom track) |
Alignm length: | 701 |
Alignm identity: | 443 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 352 |
Conread position: | 66-738 |
Cow position: | chr29:14073396-14072704 (view UCSC Genome Browser custom track) |
Alignm length: | 703 |
Alignm identity: | 444 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 354 |
Conread position: | 69-736 |
Cow position: | chr29:2099405-2100085 (view UCSC Genome Browser custom track) |
Alignm length: | 688 |
Alignm identity: | 488 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 84, 27 |
Conread position: | 69-736 |
Cow position: | chr29:7431657-7430979 (view UCSC Genome Browser custom track) |
Alignm length: | 689 |
Alignm identity: | 490 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 28 |
Conread position: | 69-736 |
Cow position: | chr29:10824397-10823729 (view UCSC Genome Browser custom track) |
Alignm length: | 690 |
Alignm identity: | 477 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 45 |
Conread position: | 69-736 |
Cow position: | chr29:40503420-40502742 (view UCSC Genome Browser custom track) |
Alignm length: | 688 |
Alignm identity: | 478 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 45 |
Conread position: | 69-736 |
Cow position: | chr29:43322110-43322795 (view UCSC Genome Browser custom track) |
Alignm length: | 695 |
Alignm identity: | 498 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 9 |
Conread position: | 72-736 |
Cow position: | chr29:2750821-2750181 (view UCSC Genome Browser custom track) |
Alignm length: | 676 |
Alignm identity: | 478 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 93, 8 |
Conread position: | 76-740 |
Cow position: | chr29:16022103-16022774 (view UCSC Genome Browser custom track) |
Alignm length: | 685 |
Alignm identity: | 479 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 74 |
Conread position: | 78-650 |
Cow position: | chr29:15969593-15968997 (view UCSC Genome Browser custom track) |
Alignm length: | 603 |
Alignm identity: | 411 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 23, 31 |
Conread position: | 78-736 |
Cow position: | chr29:2689469-2690140 (view UCSC Genome Browser custom track) |
Alignm length: | 679 |
Alignm identity: | 487 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 71, 43 |
Conread position: | 78-736 |
Cow position: | chr29:11048851-11049518 (view UCSC Genome Browser custom track) |
Alignm length: | 676 |
Alignm identity: | 504 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 149, 72 |
Conread position: | 78-736 |
Cow position: | chr29:19623696-19623007 (view UCSC Genome Browser custom track) |
Alignm length: | 691 |
Alignm identity: | 496 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 75, 376 |
Conread position: | 78-736 |
Cow position: | chr29:35196256-35196904 (view UCSC Genome Browser custom track) |
Alignm length: | 670 |
Alignm identity: | 485 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 215, 53 |
Conread position: | 78-736 |
Cow position: | chr29:43366422-43365762 (view UCSC Genome Browser custom track) |
Alignm length: | 685 |
Alignm identity: | 486 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 148, 53 |
Conread position: | 78-813 |
Cow position: | chr29:15950603-15949866 (view UCSC Genome Browser custom track) |
Alignm length: | 756 |
Alignm identity: | 511 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 157, 19 |
Conread position: | 78-813 |
Cow position: | chr29:30811099-30811849 (view UCSC Genome Browser custom track) |
Alignm length: | 760 |
Alignm identity: | 524 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 104, 90 |
Conread position: | 80-736 |
Cow position: | chr29:26165269-26164582 (view UCSC Genome Browser custom track) |
Alignm length: | 689 |
Alignm identity: | 488 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 127 |
Conread position: | 80-736 |
Cow position: | chr29:35296448-35297114 (view UCSC Genome Browser custom track) |
Alignm length: | 675 |
Alignm identity: | 473 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 123, 63 |
Conread position: | 82-369 |
Cow position: | chr29:42649915-42650195 (view UCSC Genome Browser custom track) |
Alignm length: | 297 |
Alignm identity: | 202 |
Alignm E-value: | 6e-25 |
Alignm gaps (pig, cow): | 218, 85 |
Conread position: | 82-369 |
Cow position: | chr29:42801775-42802055 (view UCSC Genome Browser custom track) |
Alignm length: | 297 |
Alignm identity: | 201 |
Alignm E-value: | 5e-23 |
Alignm gaps (pig, cow): | 218, 95 |
Conread position: | 83-471 |
Cow position: | chr29:12796889-12796498 (view UCSC Genome Browser custom track) |
Alignm length: | 404 |
Alignm identity: | 286 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 136, 48 |
Conread position: | 83-740 |
Cow position: | chr29:11841261-11841903 (view UCSC Genome Browser custom track) |
Alignm length: | 666 |
Alignm identity: | 433 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 60 |
Conread position: | 84-732 |
Cow position: | chr29:21543797-21543133 (view UCSC Genome Browser custom track) |
Alignm length: | 675 |
Alignm identity: | 488 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 142, 66 |
Conread position: | 84-736 |
Cow position: | chr29:27041185-27040532 (view UCSC Genome Browser custom track) |
Alignm length: | 669 |
Alignm identity: | 491 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 142, 66 |
Conread position: | 89-736 |
Cow position: | chr29:410932-410285 (view UCSC Genome Browser custom track) |
Alignm length: | 648 |
Alignm identity: | 200 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 90-736 |
Cow position: | chr29:10848544-10847852 (view UCSC Genome Browser custom track) |
Alignm length: | 695 |
Alignm identity: | 500 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 83, 458 |
Conread position: | 97-736 |
Cow position: | chr29:16769724-16770363 (view UCSC Genome Browser custom track) |
Alignm length: | 657 |
Alignm identity: | 480 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 137, 53 |
Conread position: | 109-815 |
Cow position: | chr29:104186-104888 (view UCSC Genome Browser custom track) |
Alignm length: | 719 |
Alignm identity: | 518 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 182, 35 |
Conread position: | 147-454 |
Cow position: | chr29:13578058-13578375 (view UCSC Genome Browser custom track) |
Alignm length: | 324 |
Alignm identity: | 218 |
Alignm E-value: | 4e-30 |
Alignm gaps (pig, cow): | 17, 100 |
Conread position: | 148-736 |
Cow position: | chr29:34800170-34799568 (view UCSC Genome Browser custom track) |
Alignm length: | 605 |
Alignm identity: | 433 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 71, 20 |
Conread position: | 150-732 |
Cow position: | chr29:25932907-25932308 (view UCSC Genome Browser custom track) |
Alignm length: | 601 |
Alignm identity: | 441 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 69, 246 |
Conread position: | 151-335 |
Cow position: | chr29:45587660-45587472 (view UCSC Genome Browser custom track) |
Alignm length: | 189 |
Alignm identity: | 133 |
Alignm E-value: | 6e-24 |
Alignm gaps (pig, cow): | 68, 0 |
Conread position: | 151-598 |
Cow position: | chr29:21246206-21246672 (view UCSC Genome Browser custom track) |
Alignm length: | 467 |
Alignm identity: | 337 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 0 |
Conread position: | 151-732 |
Cow position: | chr29:6266854-6266265 (view UCSC Genome Browser custom track) |
Alignm length: | 600 |
Alignm identity: | 439 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 100 |
Conread position: | 151-736 |
Cow position: | chr29:48838-48240 (view UCSC Genome Browser custom track) |
Alignm length: | 605 |
Alignm identity: | 432 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 261 |
Conread position: | 151-736 |
Cow position: | chr29:10648607-10648011 (view UCSC Genome Browser custom track) |
Alignm length: | 601 |
Alignm identity: | 427 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 240 |
Conread position: | 151-736 |
Cow position: | chr29:19652746-19653348 (view UCSC Genome Browser custom track) |
Alignm length: | 607 |
Alignm identity: | 441 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 289 |
Conread position: | 151-736 |
Cow position: | chr29:20250797-20251399 (view UCSC Genome Browser custom track) |
Alignm length: | 604 |
Alignm identity: | 430 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 67, 515 |
Conread position: | 151-736 |
Cow position: | chr29:23975471-23976080 (view UCSC Genome Browser custom track) |
Alignm length: | 611 |
Alignm identity: | 429 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 37 |
Conread position: | 151-736 |
Cow position: | chr29:32539449-32540050 (view UCSC Genome Browser custom track) |
Alignm length: | 603 |
Alignm identity: | 445 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 447 |
Conread position: | 151-736 |
Cow position: | chr29:38226633-38227220 (view UCSC Genome Browser custom track) |
Alignm length: | 611 |
Alignm identity: | 434 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 35 |
Conread position: | 151-736 |
Cow position: | chr29:45459357-45459956 (view UCSC Genome Browser custom track) |
Alignm length: | 604 |
Alignm identity: | 443 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 242 |
Conread position: | 153-383 |
Cow position: | chr29:9644081-9643838 (view UCSC Genome Browser custom track) |
Alignm length: | 244 |
Alignm identity: | 178 |
Alignm E-value: | 7e-36 |
Alignm gaps (pig, cow): | 72, 0 |
Conread position: | 154-711 |
Cow position: | chr29:32315683-32316256 (view UCSC Genome Browser custom track) |
Alignm length: | 576 |
Alignm identity: | 397 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 13 |
Conread position: | 157-736 |
Cow position: | chr29:2841721-2841133 (view UCSC Genome Browser custom track) |
Alignm length: | 596 |
Alignm identity: | 442 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 62, 420 |
Conread position: | 157-736 |
Cow position: | chr29:39080062-39079472 (view UCSC Genome Browser custom track) |
Alignm length: | 598 |
Alignm identity: | 435 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 62, 337 |
Conread position: | 164-474 |
Cow position: | chr29:31121459-31121784 (view UCSC Genome Browser custom track) |
Alignm length: | 329 |
Alignm identity: | 225 |
Alignm E-value: | 5e-34 |
Alignm gaps (pig, cow): | 39, 106 |
Conread position: | 164-677 |
Cow position: | chr29:16109379-16109908 (view UCSC Genome Browser custom track) |
Alignm length: | 532 |
Alignm identity: | 368 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 39, 228 |
Conread position: | 164-736 |
Cow position: | chr29:5957254-5957844 (view UCSC Genome Browser custom track) |
Alignm length: | 592 |
Alignm identity: | 414 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 451 |
Conread position: | 164-736 |
Cow position: | chr29:7840449-7841036 (view UCSC Genome Browser custom track) |
Alignm length: | 590 |
Alignm identity: | 428 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 461 |
Conread position: | 164-736 |
Cow position: | chr29:15895197-15894610 (view UCSC Genome Browser custom track) |
Alignm length: | 589 |
Alignm identity: | 426 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 39, 463 |
Conread position: | 164-736 |
Cow position: | chr29:27250682-27250102 (view UCSC Genome Browser custom track) |
Alignm length: | 589 |
Alignm identity: | 424 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 71, 453 |
Conread position: | 165-824 |
Cow position: | chr29:19893415-19894109 (view UCSC Genome Browser custom track) |
Alignm length: | 701 |
Alignm identity: | 435 |
Alignm E-value: | 5e-34 |
Alignm gaps (pig, cow): | 7, 158 |
Conread position: | 166-736 |
Cow position: | chr29:610960-610372 (view UCSC Genome Browser custom track) |
Alignm length: | 591 |
Alignm identity: | 425 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 258 |
Conread position: | 167-490 |
Cow position: | chr29:32640458-32640773 (view UCSC Genome Browser custom track) |
Alignm length: | 332 |
Alignm identity: | 230 |
Alignm E-value: | 5e-34 |
Alignm gaps (pig, cow): | 141, 35 |
Conread position: | 173-815 |
Cow position: | chr29:1714920-1715569 (view UCSC Genome Browser custom track) |
Alignm length: | 664 |
Alignm identity: | 443 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 126, 44 |
Conread position: | 219-584 |
Cow position: | chr29:31180833-31181212 (view UCSC Genome Browser custom track) |
Alignm length: | 380 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 81, 0 |
Conread position: | 219-593 |
Cow position: | chr29:21427347-21426961 (view UCSC Genome Browser custom track) |
Alignm length: | 391 |
Alignm identity: | 289 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 323 |
Conread position: | 219-608 |
Cow position: | chr29:28060958-28060552 (view UCSC Genome Browser custom track) |
Alignm length: | 407 |
Alignm identity: | 297 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 0 |
Conread position: | 219-662 |
Cow position: | chr29:13853312-13852859 (view UCSC Genome Browser custom track) |
Alignm length: | 460 |
Alignm identity: | 326 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 56 |
Conread position: | 220-508 |
Cow position: | chr29:34609235-34608945 (view UCSC Genome Browser custom track) |
Alignm length: | 295 |
Alignm identity: | 202 |
Alignm E-value: | 5e-34 |
Alignm gaps (pig, cow): | 15, 232 |
Conread position: | 250-753 |
Cow position: | chr29:17662662-17663161 (view UCSC Genome Browser custom track) |
Alignm length: | 520 |
Alignm identity: | 340 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 207 |
Conread position: | 299-710 |
Cow position: | chr29:22966449-22966046 (view UCSC Genome Browser custom track) |
Alignm length: | 416 |
Alignm identity: | 256 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 150, 17 |
Conread position: | 300-736 |
Cow position: | chr29:16017334-16016912 (view UCSC Genome Browser custom track) |
Alignm length: | 441 |
Alignm identity: | 289 |
Alignm E-value: | 9.99995e-41 |
Alignm gaps (pig, cow): | 27, 18 |
Conread position: | 300-740 |
Cow position: | chr29:11855398-11855847 (view UCSC Genome Browser custom track) |
Alignm length: | 460 |
Alignm identity: | 301 |
Alignm E-value: | 7e-36 |
Alignm gaps (pig, cow): | 19, 161 |
Conread position: | 303-702 |
Cow position: | chr29:4635160-4634773 (view UCSC Genome Browser custom track) |
Alignm length: | 400 |
Alignm identity: | 252 |
Alignm E-value: | 3e-29 |
Alignm gaps (pig, cow): | 13, 0 |
Conread position: | 315-735 |
Cow position: | chr29:19884887-19885309 (view UCSC Genome Browser custom track) |
Alignm length: | 424 |
Alignm identity: | 316 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 130, 296 |
Conread position: | 330-737 |
Cow position: | chr29:27981085-27980677 (view UCSC Genome Browser custom track) |
Alignm length: | 411 |
Alignm identity: | 306 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 115, 284 |
Conread position: | 336-736 |
Cow position: | chr29:18857106-18856704 (view UCSC Genome Browser custom track) |
Alignm length: | 405 |
Alignm identity: | 267 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 109, 278 |
Conread position: | 342-582 |
Cow position: | chr29:5983335-5983094 (view UCSC Genome Browser custom track) |
Alignm length: | 244 |
Alignm identity: | 187 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 55 |
Conread position: | 350-512 |
Cow position: | chr29:43791033-43791196 (view UCSC Genome Browser custom track) |
Alignm length: | 165 |
Alignm identity: | 128 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 89, 155 |
Conread position: | 350-736 |
Cow position: | chr29:14585780-14586162 (view UCSC Genome Browser custom track) |
Alignm length: | 389 |
Alignm identity: | 289 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 95, 203 |
Conread position: | 363-637 |
Cow position: | chr29:13648283-13648544 (view UCSC Genome Browser custom track) |
Alignm length: | 277 |
Alignm identity: | 188 |
Alignm E-value: | 6e-25 |
Alignm gaps (pig, cow): | 55, 49 |
Conread position: | 365-736 |
Cow position: | chr29:670189-669817 (view UCSC Genome Browser custom track) |
Alignm length: | 375 |
Alignm identity: | 284 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 80, 231 |
Conread position: | 374-736 |
Cow position: | chr29:45587469-45587120 (view UCSC Genome Browser custom track) |
Alignm length: | 365 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 71, 91 |
Conread position: | 411-736 |
Cow position: | chr29:42650198-42650526 (view UCSC Genome Browser custom track) |
Alignm length: | 330 |
Alignm identity: | 237 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 35, 173 |
Conread position: | 411-736 |
Cow position: | chr29:42802058-42802386 (view UCSC Genome Browser custom track) |
Alignm length: | 330 |
Alignm identity: | 239 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 35, 173 |
Conread position: | 413-702 |
Cow position: | chr29:27654370-27654087 (view UCSC Genome Browser custom track) |
Alignm length: | 290 |
Alignm identity: | 184 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 416-736 |
Cow position: | chr29:2466418-2466094 (view UCSC Genome Browser custom track) |
Alignm length: | 326 |
Alignm identity: | 234 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 200 |
Conread position: | 424-724 |
Cow position: | chr29:13581998-13582296 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 224 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 187 |
Conread position: | 433-714 |
Cow position: | chr29:30261490-30261209 (view UCSC Genome Browser custom track) |
Alignm length: | 285 |
Alignm identity: | 180 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 83, 11 |
Conread position: | 438-736 |
Cow position: | chr29:9643816-9643516 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 241 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 195, 137 |
Conread position: | 444-730 |
Cow position: | chr29:4056098-4056384 (view UCSC Genome Browser custom track) |
Alignm length: | 291 |
Alignm identity: | 194 |
Alignm E-value: | 1e-29 |
Alignm gaps (pig, cow): | 53, 22 |
Conread position: | 476-693 |
Cow position: | chr29:12796385-12796168 (view UCSC Genome Browser custom track) |
Alignm length: | 219 |
Alignm identity: | 172 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 50, 61 |
Conread position: | 531-736 |
Cow position: | chr29:34925509-34925719 (view UCSC Genome Browser custom track) |
Alignm length: | 212 |
Alignm identity: | 160 |
Alignm E-value: | 7e-37 |
Alignm gaps (pig, cow): | 35, 86 |
Conread position: | 572-736 |
Cow position: | chr29:31181492-31181655 (view UCSC Genome Browser custom track) |
Alignm length: | 166 |
Alignm identity: | 124 |
Alignm E-value: | 8e-27 |
Alignm gaps (pig, cow): | 49, 25 |
Conread position: | 588-709 |
Cow position: | chr29:21426932-21426811 (view UCSC Genome Browser custom track) |
Alignm length: | 123 |
Alignm identity: | 101 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 33, 24 |
Show alignments to all cow chromosomes.