Cow genome map

Conread name: Ss1.1-rspc011_k9.5

Conread position: 55-641
Cow position: chr29:24199078-24198474 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 379
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 41, 113

Conread position: 66-738
Cow position: chr29:14013017-14013707 (view UCSC Genome Browser custom track)
Alignm length: 701
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 352

Conread position: 66-738
Cow position: chr29:14073396-14072704 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 354

Conread position: 69-736
Cow position: chr29:2099405-2100085 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 27

Conread position: 69-736
Cow position: chr29:7431657-7430979 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 28

Conread position: 69-736
Cow position: chr29:10824397-10823729 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 45

Conread position: 69-736
Cow position: chr29:40503420-40502742 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 45

Conread position: 69-736
Cow position: chr29:43322110-43322795 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 9

Conread position: 72-736
Cow position: chr29:2750821-2750181 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 8

Conread position: 76-740
Cow position: chr29:16022103-16022774 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 74

Conread position: 78-650
Cow position: chr29:15969593-15968997 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 31

Conread position: 78-736
Cow position: chr29:2689469-2690140 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 43

Conread position: 78-736
Cow position: chr29:11048851-11049518 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 72

Conread position: 78-736
Cow position: chr29:19623696-19623007 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 376

Conread position: 78-736
Cow position: chr29:35196256-35196904 (view UCSC Genome Browser custom track)
Alignm length: 670
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 53

Conread position: 78-736
Cow position: chr29:43366422-43365762 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 53

Conread position: 78-813
Cow position: chr29:15950603-15949866 (view UCSC Genome Browser custom track)
Alignm length: 756
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 19

Conread position: 78-813
Cow position: chr29:30811099-30811849 (view UCSC Genome Browser custom track)
Alignm length: 760
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 90

Conread position: 80-736
Cow position: chr29:26165269-26164582 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 127

Conread position: 80-736
Cow position: chr29:35296448-35297114 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 63

Conread position: 82-369
Cow position: chr29:42649915-42650195 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 202
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 218, 85

Conread position: 82-369
Cow position: chr29:42801775-42802055 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 201
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 218, 95

Conread position: 83-471
Cow position: chr29:12796889-12796498 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 48

Conread position: 83-740
Cow position: chr29:11841261-11841903 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 60

Conread position: 84-732
Cow position: chr29:21543797-21543133 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 66

Conread position: 84-736
Cow position: chr29:27041185-27040532 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 66

Conread position: 89-736
Cow position: chr29:410932-410285 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 90-736
Cow position: chr29:10848544-10847852 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 458

Conread position: 97-736
Cow position: chr29:16769724-16770363 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 53

Conread position: 109-815
Cow position: chr29:104186-104888 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 35

Conread position: 147-454
Cow position: chr29:13578058-13578375 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 218
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 17, 100

Conread position: 148-736
Cow position: chr29:34800170-34799568 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 20

Conread position: 150-732
Cow position: chr29:25932907-25932308 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 246

Conread position: 151-335
Cow position: chr29:45587660-45587472 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 133
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 68, 0

Conread position: 151-598
Cow position: chr29:21246206-21246672 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 151-732
Cow position: chr29:6266854-6266265 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 100

Conread position: 151-736
Cow position: chr29:48838-48240 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 261

Conread position: 151-736
Cow position: chr29:10648607-10648011 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 240

Conread position: 151-736
Cow position: chr29:19652746-19653348 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 289

Conread position: 151-736
Cow position: chr29:20250797-20251399 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 515

Conread position: 151-736
Cow position: chr29:23975471-23976080 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 37

Conread position: 151-736
Cow position: chr29:32539449-32540050 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 447

Conread position: 151-736
Cow position: chr29:38226633-38227220 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 35

Conread position: 151-736
Cow position: chr29:45459357-45459956 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 242

Conread position: 153-383
Cow position: chr29:9644081-9643838 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 178
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 72, 0

Conread position: 154-711
Cow position: chr29:32315683-32316256 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 13

Conread position: 157-736
Cow position: chr29:2841721-2841133 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 420

Conread position: 157-736
Cow position: chr29:39080062-39079472 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 337

Conread position: 164-474
Cow position: chr29:31121459-31121784 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 225
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 39, 106

Conread position: 164-677
Cow position: chr29:16109379-16109908 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 228

Conread position: 164-736
Cow position: chr29:5957254-5957844 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 451

Conread position: 164-736
Cow position: chr29:7840449-7841036 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 461

Conread position: 164-736
Cow position: chr29:15895197-15894610 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 463

Conread position: 164-736
Cow position: chr29:27250682-27250102 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 453

Conread position: 165-824
Cow position: chr29:19893415-19894109 (view UCSC Genome Browser custom track)
Alignm length: 701
Alignm identity: 435
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 7, 158

Conread position: 166-736
Cow position: chr29:610960-610372 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 258

Conread position: 167-490
Cow position: chr29:32640458-32640773 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 230
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 141, 35

Conread position: 173-815
Cow position: chr29:1714920-1715569 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 44

Conread position: 219-584
Cow position: chr29:31180833-31181212 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 0

Conread position: 219-593
Cow position: chr29:21427347-21426961 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 323

Conread position: 219-608
Cow position: chr29:28060958-28060552 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 219-662
Cow position: chr29:13853312-13852859 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 56

Conread position: 220-508
Cow position: chr29:34609235-34608945 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 202
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 15, 232

Conread position: 250-753
Cow position: chr29:17662662-17663161 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 207

Conread position: 299-710
Cow position: chr29:22966449-22966046 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 256
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 150, 17

Conread position: 300-736
Cow position: chr29:16017334-16016912 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 289
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 27, 18

Conread position: 300-740
Cow position: chr29:11855398-11855847 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 301
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 19, 161

Conread position: 303-702
Cow position: chr29:4635160-4634773 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 252
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 13, 0

Conread position: 315-735
Cow position: chr29:19884887-19885309 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 296

Conread position: 330-737
Cow position: chr29:27981085-27980677 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 284

Conread position: 336-736
Cow position: chr29:18857106-18856704 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 278

Conread position: 342-582
Cow position: chr29:5983335-5983094 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 55

Conread position: 350-512
Cow position: chr29:43791033-43791196 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 128
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 89, 155

Conread position: 350-736
Cow position: chr29:14585780-14586162 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 203

Conread position: 363-637
Cow position: chr29:13648283-13648544 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 188
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 55, 49

Conread position: 365-736
Cow position: chr29:670189-669817 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 231

Conread position: 374-736
Cow position: chr29:45587469-45587120 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 91

Conread position: 411-736
Cow position: chr29:42650198-42650526 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 173

Conread position: 411-736
Cow position: chr29:42802058-42802386 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 173

Conread position: 413-702
Cow position: chr29:27654370-27654087 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 184
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 416-736
Cow position: chr29:2466418-2466094 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 200

Conread position: 424-724
Cow position: chr29:13581998-13582296 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 187

Conread position: 433-714
Cow position: chr29:30261490-30261209 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 180
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 83, 11

Conread position: 438-736
Cow position: chr29:9643816-9643516 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 137

Conread position: 444-730
Cow position: chr29:4056098-4056384 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 194
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 53, 22

Conread position: 476-693
Cow position: chr29:12796385-12796168 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 61

Conread position: 531-736
Cow position: chr29:34925509-34925719 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 160
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 35, 86

Conread position: 572-736
Cow position: chr29:31181492-31181655 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 49, 25

Conread position: 588-709
Cow position: chr29:21426932-21426811 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 101
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 33, 24

Show alignments to all cow chromosomes.