Cow genome map


           Conread name:
           Ss1.1-rspc011_k9.5
        

               Conread position:
               55-641
               

               Cow position:
               
               

               Alignm length:
               608
               

               Alignm identity:
               379
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               41, 113
               

               Conread position:
               66-738
               

               Cow position:
               
               

               Alignm length:
               701
               

               Alignm identity:
               443
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 352
               

               Conread position:
               66-738
               

               Cow position:
               
               

               Alignm length:
               703
               

               Alignm identity:
               444
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 354
               

               Conread position:
               69-736
               

               Cow position:
               
               

               Alignm length:
               688
               

               Alignm identity:
               488
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 27
               

               Conread position:
               69-736
               

               Cow position:
               
               

               Alignm length:
               689
               

               Alignm identity:
               490
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 28
               

               Conread position:
               69-736
               

               Cow position:
               
               

               Alignm length:
               690
               

               Alignm identity:
               477
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 45
               

               Conread position:
               69-736
               

               Cow position:
               
               

               Alignm length:
               688
               

               Alignm identity:
               478
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 45
               

               Conread position:
               69-736
               

               Cow position:
               
               

               Alignm length:
               695
               

               Alignm identity:
               498
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 9
               

               Conread position:
               72-736
               

               Cow position:
               
               

               Alignm length:
               676
               

               Alignm identity:
               478
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 8
               

               Conread position:
               76-740
               

               Cow position:
               
               

               Alignm length:
               685
               

               Alignm identity:
               479
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 74
               

               Conread position:
               78-650
               

               Cow position:
               
               

               Alignm length:
               603
               

               Alignm identity:
               411
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 31
               

               Conread position:
               78-736
               

               Cow position:
               
               

               Alignm length:
               679
               

               Alignm identity:
               487
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 43
               

               Conread position:
               78-736
               

               Cow position:
               
               

               Alignm length:
               676
               

               Alignm identity:
               504
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 72
               

               Conread position:
               78-736
               

               Cow position:
               
               

               Alignm length:
               691
               

               Alignm identity:
               496
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 376
               

               Conread position:
               78-736
               

               Cow position:
               
               

               Alignm length:
               670
               

               Alignm identity:
               485
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               215, 53
               

               Conread position:
               78-736
               

               Cow position:
               
               

               Alignm length:
               685
               

               Alignm identity:
               486
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 53
               

               Conread position:
               78-813
               

               Cow position:
               
               

               Alignm length:
               756
               

               Alignm identity:
               511
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 19
               

               Conread position:
               78-813
               

               Cow position:
               
               

               Alignm length:
               760
               

               Alignm identity:
               524
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 90
               

               Conread position:
               80-736
               

               Cow position:
               
               

               Alignm length:
               689
               

               Alignm identity:
               488
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 127
               

               Conread position:
               80-736
               

               Cow position:
               
               

               Alignm length:
               675
               

               Alignm identity:
               473
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 63
               

               Conread position:
               82-369
               

               Cow position:
               
               

               Alignm length:
               297
               

               Alignm identity:
               202
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               218, 85
               

               Conread position:
               82-369
               

               Cow position:
               
               

               Alignm length:
               297
               

               Alignm identity:
               201
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               218, 95
               

               Conread position:
               83-471
               

               Cow position:
               
               

               Alignm length:
               404
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 48
               

               Conread position:
               83-740
               

               Cow position:
               
               

               Alignm length:
               666
               

               Alignm identity:
               433
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 60
               

               Conread position:
               84-732
               

               Cow position:
               
               

               Alignm length:
               675
               

               Alignm identity:
               488
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               142, 66
               

               Conread position:
               84-736
               

               Cow position:
               
               

               Alignm length:
               669
               

               Alignm identity:
               491
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               142, 66
               

               Conread position:
               89-736
               

               Cow position:
               
               

               Alignm length:
               648
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               90-736
               

               Cow position:
               
               

               Alignm length:
               695
               

               Alignm identity:
               500
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 458
               

               Conread position:
               97-736
               

               Cow position:
               
               

               Alignm length:
               657
               

               Alignm identity:
               480
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 53
               

               Conread position:
               109-815
               

               Cow position:
               
               

               Alignm length:
               719
               

               Alignm identity:
               518
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 35
               

               Conread position:
               147-454
               

               Cow position:
               
               

               Alignm length:
               324
               

               Alignm identity:
               218
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               17, 100
               

               Conread position:
               148-736
               

               Cow position:
               
               

               Alignm length:
               605
               

               Alignm identity:
               433
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 20
               

               Conread position:
               150-732
               

               Cow position:
               
               

               Alignm length:
               601
               

               Alignm identity:
               441
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 246
               

               Conread position:
               151-335
               

               Cow position:
               
               

               Alignm length:
               189
               

               Alignm identity:
               133
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               151-598
               

               Cow position:
               
               

               Alignm length:
               467
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               151-732
               

               Cow position:
               
               

               Alignm length:
               600
               

               Alignm identity:
               439
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 100
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               605
               

               Alignm identity:
               432
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 261
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               601
               

               Alignm identity:
               427
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 240
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               607
               

               Alignm identity:
               441
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 289
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               604
               

               Alignm identity:
               430
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 515
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               611
               

               Alignm identity:
               429
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 37
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               603
               

               Alignm identity:
               445
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 447
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               611
               

               Alignm identity:
               434
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 35
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               604
               

               Alignm identity:
               443
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 242
               

               Conread position:
               153-383
               

               Cow position:
               
               

               Alignm length:
               244
               

               Alignm identity:
               178
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               154-711
               

               Cow position:
               
               

               Alignm length:
               576
               

               Alignm identity:
               397
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 13
               

               Conread position:
               157-736
               

               Cow position:
               
               

               Alignm length:
               596
               

               Alignm identity:
               442
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 420
               

               Conread position:
               157-736
               

               Cow position:
               
               

               Alignm length:
               598
               

               Alignm identity:
               435
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 337
               

               Conread position:
               164-474
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               225
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               39, 106
               

               Conread position:
               164-677
               

               Cow position:
               
               

               Alignm length:
               532
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 228
               

               Conread position:
               164-736
               

               Cow position:
               
               

               Alignm length:
               592
               

               Alignm identity:
               414
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 451
               

               Conread position:
               164-736
               

               Cow position:
               
               

               Alignm length:
               590
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 461
               

               Conread position:
               164-736
               

               Cow position:
               
               

               Alignm length:
               589
               

               Alignm identity:
               426
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 463
               

               Conread position:
               164-736
               

               Cow position:
               
               

               Alignm length:
               589
               

               Alignm identity:
               424
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 453
               

               Conread position:
               165-824
               

               Cow position:
               
               

               Alignm length:
               701
               

               Alignm identity:
               435
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               7, 158
               

               Conread position:
               166-736
               

               Cow position:
               
               

               Alignm length:
               591
               

               Alignm identity:
               425
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 258
               

               Conread position:
               167-490
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               230
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               141, 35
               

               Conread position:
               173-815
               

               Cow position:
               
               

               Alignm length:
               664
               

               Alignm identity:
               443
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 44
               

               Conread position:
               219-584
               

               Cow position:
               
               

               Alignm length:
               380
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               219-593
               

               Cow position:
               
               

               Alignm length:
               391
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 323
               

               Conread position:
               219-608
               

               Cow position:
               
               

               Alignm length:
               407
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               219-662
               

               Cow position:
               
               

               Alignm length:
               460
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 56
               

               Conread position:
               220-508
               

               Cow position:
               
               

               Alignm length:
               295
               

               Alignm identity:
               202
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               15, 232
               

               Conread position:
               250-753
               

               Cow position:
               
               

               Alignm length:
               520
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 207
               

               Conread position:
               299-710
               

               Cow position:
               
               

               Alignm length:
               416
               

               Alignm identity:
               256
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               150, 17
               

               Conread position:
               300-736
               

               Cow position:
               
               

               Alignm length:
               441
               

               Alignm identity:
               289
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               27, 18
               

               Conread position:
               300-740
               

               Cow position:
               
               

               Alignm length:
               460
               

               Alignm identity:
               301
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               19, 161
               

               Conread position:
               303-702
               

               Cow position:
               
               

               Alignm length:
               400
               

               Alignm identity:
               252
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               315-735
               

               Cow position:
               
               

               Alignm length:
               424
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 296
               

               Conread position:
               330-737
               

               Cow position:
               
               

               Alignm length:
               411
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 284
               

               Conread position:
               336-736
               

               Cow position:
               
               

               Alignm length:
               405
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 278
               

               Conread position:
               342-582
               

               Cow position:
               
               

               Alignm length:
               244
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 55
               

               Conread position:
               350-512
               

               Cow position:
               
               

               Alignm length:
               165
               

               Alignm identity:
               128
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               89, 155
               

               Conread position:
               350-736
               

               Cow position:
               
               

               Alignm length:
               389
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 203
               

               Conread position:
               363-637
               

               Cow position:
               
               

               Alignm length:
               277
               

               Alignm identity:
               188
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               55, 49
               

               Conread position:
               365-736
               

               Cow position:
               
               

               Alignm length:
               375
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 231
               

               Conread position:
               374-736
               

               Cow position:
               
               

               Alignm length:
               365
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 91
               

               Conread position:
               411-736
               

               Cow position:
               
               

               Alignm length:
               330
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 173
               

               Conread position:
               411-736
               

               Cow position:
               
               

               Alignm length:
               330
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 173
               

               Conread position:
               413-702
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               416-736
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 200
               

               Conread position:
               424-724
               

               Cow position:
               
               

               Alignm length:
               303
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 187
               

               Conread position:
               433-714
               

               Cow position:
               
               

               Alignm length:
               285
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               83, 11
               

               Conread position:
               438-736
               

               Cow position:
               
               

               Alignm length:
               303
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               195, 137
               

               Conread position:
               444-730
               

               Cow position:
               
               

               Alignm length:
               291
               

               Alignm identity:
               194
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               53, 22
               

               Conread position:
               476-693
               

               Cow position:
               
               

               Alignm length:
               219
               

               Alignm identity:
               172
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 61
               

               Conread position:
               531-736
               

               Cow position:
               
               

               Alignm length:
               212
               

               Alignm identity:
               160
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               35, 86
               

               Conread position:
               572-736
               

               Cow position:
               
               

               Alignm length:
               166
               

               Alignm identity:
               124
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               49, 25
               

               Conread position:
               588-709
               

               Cow position:
               
               

               Alignm length:
               123
               

               Alignm identity:
               101
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               33, 24
               
Show alignments to all cow chromosomes.