Cow genome map


           Conread name:
           Ss1.1-rspc011_k9.5
        

               Conread position:
               61-609
               

               Cow position:
               
               

               Alignm length:
               575
               

               Alignm identity:
               390
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 20
               

               Conread position:
               68-736
               

               Cow position:
               
               

               Alignm length:
               689
               

               Alignm identity:
               498
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 10
               

               Conread position:
               69-736
               

               Cow position:
               
               

               Alignm length:
               688
               

               Alignm identity:
               483
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 36
               

               Conread position:
               69-736
               

               Cow position:
               
               

               Alignm length:
               686
               

               Alignm identity:
               486
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 9
               

               Conread position:
               69-736
               

               Cow position:
               
               

               Alignm length:
               685
               

               Alignm identity:
               487
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 76
               

               Conread position:
               74-451
               

               Cow position:
               
               

               Alignm length:
               390
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 31
               

               Conread position:
               74-755
               

               Cow position:
               
               

               Alignm length:
               721
               

               Alignm identity:
               465
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 127
               

               Conread position:
               75-546
               

               Cow position:
               
               

               Alignm length:
               488
               

               Alignm identity:
               307
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               105, 116
               

               Conread position:
               75-590
               

               Cow position:
               
               

               Alignm length:
               532
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 42
               

               Conread position:
               77-824
               

               Cow position:
               
               

               Alignm length:
               780
               

               Alignm identity:
               560
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 29
               

               Conread position:
               78-335
               

               Cow position:
               
               

               Alignm length:
               270
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               89, 264
               

               Conread position:
               78-720
               

               Cow position:
               
               

               Alignm length:
               660
               

               Alignm identity:
               482
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               145, 53
               

               Conread position:
               78-722
               

               Cow position:
               
               

               Alignm length:
               666
               

               Alignm identity:
               443
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 24
               

               Conread position:
               78-730
               

               Cow position:
               
               

               Alignm length:
               660
               

               Alignm identity:
               464
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 72
               

               Conread position:
               78-740
               

               Cow position:
               
               

               Alignm length:
               678
               

               Alignm identity:
               414
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               26, 92
               

               Conread position:
               88-812
               

               Cow position:
               
               

               Alignm length:
               753
               

               Alignm identity:
               536
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 61
               

               Conread position:
               99-813
               

               Cow position:
               
               

               Alignm length:
               749
               

               Alignm identity:
               528
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 146
               

               Conread position:
               103-713
               

               Cow position:
               
               

               Alignm length:
               620
               

               Alignm identity:
               391
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 47
               

               Conread position:
               118-739
               

               Cow position:
               
               

               Alignm length:
               643
               

               Alignm identity:
               425
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 432
               

               Conread position:
               122-736
               

               Cow position:
               
               

               Alignm length:
               636
               

               Alignm identity:
               458
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 30
               

               Conread position:
               146-723
               

               Cow position:
               
               

               Alignm length:
               602
               

               Alignm identity:
               390
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 317
               

               Conread position:
               148-718
               

               Cow position:
               
               

               Alignm length:
               589
               

               Alignm identity:
               429
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 314
               

               Conread position:
               149-736
               

               Cow position:
               
               

               Alignm length:
               605
               

               Alignm identity:
               438
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 117
               

               Conread position:
               150-736
               

               Cow position:
               
               

               Alignm length:
               610
               

               Alignm identity:
               443
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 480
               

               Conread position:
               150-736
               

               Cow position:
               
               

               Alignm length:
               609
               

               Alignm identity:
               440
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 483
               

               Conread position:
               151-298
               

               Cow position:
               
               

               Alignm length:
               152
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               151-305
               

               Cow position:
               
               

               Alignm length:
               161
               

               Alignm identity:
               118
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               151-310
               

               Cow position:
               
               

               Alignm length:
               164
               

               Alignm identity:
               119
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               151-520
               

               Cow position:
               
               

               Alignm length:
               389
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               151-682
               

               Cow position:
               
               

               Alignm length:
               550
               

               Alignm identity:
               394
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 464
               

               Conread position:
               151-732
               

               Cow position:
               
               

               Alignm length:
               598
               

               Alignm identity:
               449
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 56
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               604
               

               Alignm identity:
               440
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 95
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               604
               

               Alignm identity:
               432
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 261
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               606
               

               Alignm identity:
               447
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               604
               

               Alignm identity:
               436
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 226
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               605
               

               Alignm identity:
               437
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 358
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               607
               

               Alignm identity:
               436
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 344
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               604
               

               Alignm identity:
               433
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 447
               

               Conread position:
               151-736
               

               Cow position:
               
               

               Alignm length:
               604
               

               Alignm identity:
               444
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               152-473
               

               Cow position:
               
               

               Alignm length:
               340
               

               Alignm identity:
               235
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               152-736
               

               Cow position:
               
               

               Alignm length:
               601
               

               Alignm identity:
               437
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 394
               

               Conread position:
               153-713
               

               Cow position:
               
               

               Alignm length:
               581
               

               Alignm identity:
               370
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               55, 48
               

               Conread position:
               154-735
               

               Cow position:
               
               

               Alignm length:
               599
               

               Alignm identity:
               443
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 457
               

               Conread position:
               154-736
               

               Cow position:
               
               

               Alignm length:
               601
               

               Alignm identity:
               439
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               154-736
               

               Cow position:
               
               

               Alignm length:
               601
               

               Alignm identity:
               435
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 119
               

               Conread position:
               154-740
               

               Cow position:
               
               

               Alignm length:
               624
               

               Alignm identity:
               440
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 330
               

               Conread position:
               154-813
               

               Cow position:
               
               

               Alignm length:
               683
               

               Alignm identity:
               507
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 23
               

               Conread position:
               157-736
               

               Cow position:
               
               

               Alignm length:
               597
               

               Alignm identity:
               436
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 214
               

               Conread position:
               157-740
               

               Cow position:
               
               

               Alignm length:
               591
               

               Alignm identity:
               374
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               18, 63
               

               Conread position:
               157-813
               

               Cow position:
               
               

               Alignm length:
               685
               

               Alignm identity:
               504
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 225
               

               Conread position:
               157-824
               

               Cow position:
               
               

               Alignm length:
               692
               

               Alignm identity:
               439
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               142, 43
               

               Conread position:
               158-811
               

               Cow position:
               
               

               Alignm length:
               683
               

               Alignm identity:
               453
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 42
               

               Conread position:
               158-813
               

               Cow position:
               
               

               Alignm length:
               679
               

               Alignm identity:
               452
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 222
               

               Conread position:
               159-439
               

               Cow position:
               
               

               Alignm length:
               287
               

               Alignm identity:
               183
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               135, 0
               

               Conread position:
               164-687
               

               Cow position:
               
               

               Alignm length:
               543
               

               Alignm identity:
               385
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 463
               

               Conread position:
               164-736
               

               Cow position:
               
               

               Alignm length:
               592
               

               Alignm identity:
               422
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 318
               

               Conread position:
               164-736
               

               Cow position:
               
               

               Alignm length:
               588
               

               Alignm identity:
               417
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 35
               

               Conread position:
               164-736
               

               Cow position:
               
               

               Alignm length:
               592
               

               Alignm identity:
               428
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 225
               

               Conread position:
               164-736
               

               Cow position:
               
               

               Alignm length:
               580
               

               Alignm identity:
               423
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 71
               

               Conread position:
               164-736
               

               Cow position:
               
               

               Alignm length:
               587
               

               Alignm identity:
               425
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 35
               

               Conread position:
               164-738
               

               Cow position:
               
               

               Alignm length:
               608
               

               Alignm identity:
               432
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 307
               

               Conread position:
               219-736
               

               Cow position:
               
               

               Alignm length:
               531
               

               Alignm identity:
               390
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 304
               

               Conread position:
               220-736
               

               Cow position:
               
               

               Alignm length:
               531
               

               Alignm identity:
               415
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 405
               

               Conread position:
               222-476
               

               Cow position:
               
               

               Alignm length:
               269
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 11
               

               Conread position:
               228-736
               

               Cow position:
               
               

               Alignm length:
               520
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 265
               

               Conread position:
               259-736
               

               Cow position:
               
               

               Alignm length:
               483
               

               Alignm identity:
               358
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 342
               

               Conread position:
               268-492
               

               Cow position:
               
               

               Alignm length:
               239
               

               Alignm identity:
               174
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               32, 203
               

               Conread position:
               284-674
               

               Cow position:
               
               

               Alignm length:
               402
               

               Alignm identity:
               244
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               143, 15
               

               Conread position:
               299-736
               

               Cow position:
               
               

               Alignm length:
               440
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               145, 212
               

               Conread position:
               299-813
               

               Cow position:
               
               

               Alignm length:
               520
               

               Alignm identity:
               344
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               8, 124
               

               Conread position:
               300-732
               

               Cow position:
               
               

               Alignm length:
               435
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               142, 71
               

               Conread position:
               301-736
               

               Cow position:
               
               

               Alignm length:
               436
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               301-736
               

               Cow position:
               
               

               Alignm length:
               438
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               320, 143
               

               Conread position:
               302-737
               

               Cow position:
               
               

               Alignm length:
               439
               

               Alignm identity:
               272
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               371, 14
               

               Conread position:
               302-740
               

               Cow position:
               
               

               Alignm length:
               445
               

               Alignm identity:
               283
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               98, 8
               

               Conread position:
               304-713
               

               Cow position:
               
               

               Alignm length:
               413
               

               Alignm identity:
               273
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               19, 85
               

               Conread position:
               322-688
               

               Cow position:
               
               

               Alignm length:
               370
               

               Alignm identity:
               249
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               299, 58
               

               Conread position:
               351-736
               

               Cow position:
               
               

               Alignm length:
               389
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 9
               

               Conread position:
               352-812
               

               Cow position:
               
               

               Alignm length:
               475
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 26
               

               Conread position:
               397-824
               

               Cow position:
               
               

               Alignm length:
               432
               

               Alignm identity:
               285
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               23, 12
               

               Conread position:
               428-645
               

               Cow position:
               
               

               Alignm length:
               223
               

               Alignm identity:
               158
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               22, 50
               

               Conread position:
               433-736
               

               Cow position:
               
               

               Alignm length:
               304
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               447-736
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               184, 0
               

               Conread position:
               454-736
               

               Cow position:
               
               

               Alignm length:
               284
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               167, 158
               

               Conread position:
               488-798
               

               Cow position:
               
               

               Alignm length:
               321
               

               Alignm identity:
               211
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               51, 102
               

               Conread position:
               498-658
               

               Cow position:
               
               

               Alignm length:
               163
               

               Alignm identity:
               117
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               522-686
               

               Cow position:
               
               

               Alignm length:
               168
               

               Alignm identity:
               125
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               531-736
               

               Cow position:
               
               

               Alignm length:
               207
               

               Alignm identity:
               159
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               90, 81
               

               Conread position:
               532-813
               

               Cow position:
               
               

               Alignm length:
               294
               

               Alignm identity:
               214
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               9, 135
               

               Conread position:
               576-736
               

               Cow position:
               
               

               Alignm length:
               162
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               45, 36
               

               Conread position:
               581-736
               

               Cow position:
               
               

               Alignm length:
               157
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               95, 47
               

               Conread position:
               611-739
               

               Cow position:
               
               

               Alignm length:
               130
               

               Alignm identity:
               100
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               622-735
               

               Cow position:
               
               

               Alignm length:
               114
               

               Alignm identity:
               92
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               623-739
               

               Cow position:
               
               

               Alignm length:
               117
               

               Alignm identity:
               94
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               0, 0
               
Show alignments to all cow chromosomes.