Cow genome map

Conread name: Ss1.1-rspc011_k9.5

Conread position: 68-736
Cow position: chr5:49119911-49119224 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 10

Conread position: 69-724
Cow position: chr5:6158817-6158153 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 81

Conread position: 69-732
Cow position: chr5:30578701-30579375 (view UCSC Genome Browser custom track)
Alignm length: 684
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 28

Conread position: 69-736
Cow position: chr5:416344-415665 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 28

Conread position: 69-736
Cow position: chr5:32674348-32673683 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 18

Conread position: 69-736
Cow position: chr5:37731713-37732403 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 9

Conread position: 72-824
Cow position: chr5:49101002-49101773 (view UCSC Genome Browser custom track)
Alignm length: 791
Alignm identity: 489
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 16, 236

Conread position: 74-646
Cow position: chr5:57366639-57366057 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 124

Conread position: 75-491
Cow position: chr5:27000571-27000986 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 283
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 82, 44

Conread position: 78-369
Cow position: chr5:6519269-6519575 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 229
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 89, 22

Conread position: 78-473
Cow position: chr5:30088342-30087927 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 288
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 57, 141

Conread position: 78-512
Cow position: chr5:4384611-4385060 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 301
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 35, 13

Conread position: 78-717
Cow position: chr5:14346996-14346341 (view UCSC Genome Browser custom track)
Alignm length: 672
Alignm identity: 424
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 89, 22

Conread position: 78-732
Cow position: chr5:28030879-28031530 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 71

Conread position: 78-735
Cow position: chr5:3504877-3504194 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 312

Conread position: 78-736
Cow position: chr5:24329679-24330331 (view UCSC Genome Browser custom track)
Alignm length: 680
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 51

Conread position: 78-736
Cow position: chr5:26769199-26769861 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 53

Conread position: 78-736
Cow position: chr5:32945256-32945931 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 71

Conread position: 78-736
Cow position: chr5:45699667-45700323 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 62

Conread position: 78-736
Cow position: chr5:46739217-46738528 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 449

Conread position: 78-736
Cow position: chr5:49181672-49182326 (view UCSC Genome Browser custom track)
Alignm length: 671
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 72

Conread position: 80-590
Cow position: chr5:27683377-27682859 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 135

Conread position: 80-732
Cow position: chr5:34202340-34202988 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 28

Conread position: 80-732
Cow position: chr5:48468890-48468226 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 26

Conread position: 80-736
Cow position: chr5:24576298-24576972 (view UCSC Genome Browser custom track)
Alignm length: 680
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 35

Conread position: 80-736
Cow position: chr5:26079833-26079161 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 41

Conread position: 80-811
Cow position: chr5:46631045-46630302 (view UCSC Genome Browser custom track)
Alignm length: 764
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 307

Conread position: 81-730
Cow position: chr5:32733853-32733201 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 28

Conread position: 84-813
Cow position: chr5:49594084-49593312 (view UCSC Genome Browser custom track)
Alignm length: 776
Alignm identity: 559
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 368

Conread position: 87-386
Cow position: chr5:52804729-52805040 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 228
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 139, 63

Conread position: 87-736
Cow position: chr5:9687012-9686370 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 58

Conread position: 88-439
Cow position: chr5:12682105-12681754 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 43

Conread position: 88-440
Cow position: chr5:23716549-23716190 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 43

Conread position: 90-736
Cow position: chr5:27652584-27651925 (view UCSC Genome Browser custom track)
Alignm length: 680
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 87

Conread position: 97-322
Cow position: chr5:41963546-41963304 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 173
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 56, 222

Conread position: 99-736
Cow position: chr5:39165391-39164743 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 32

Conread position: 102-722
Cow position: chr5:51162306-51162941 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 418
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 65, 41

Conread position: 107-732
Cow position: chr5:28006641-28007243 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 35

Conread position: 148-739
Cow position: chr5:27909819-27909212 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 388

Conread position: 150-463
Cow position: chr5:12644418-12644102 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 231
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 11, 222

Conread position: 150-722
Cow position: chr5:14379620-14380206 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 96

Conread position: 150-736
Cow position: chr5:4068444-4069045 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 228

Conread position: 151-388
Cow position: chr5:59282217-59282470 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 183
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 68, 0

Conread position: 151-436
Cow position: chr5:59144233-59144537 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 209
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 15, 0

Conread position: 151-553
Cow position: chr5:54793163-54792738 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 318

Conread position: 151-722
Cow position: chr5:1342341-1341755 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 507

Conread position: 151-732
Cow position: chr5:3785266-3785838 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 240

Conread position: 151-736
Cow position: chr5:2430677-2430075 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 126

Conread position: 151-736
Cow position: chr5:2913905-2914505 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 561

Conread position: 151-736
Cow position: chr5:7273321-7273885 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 104

Conread position: 151-736
Cow position: chr5:55627459-55628043 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 222

Conread position: 151-736
Cow position: chr5:64782562-64781961 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 261

Conread position: 152-636
Cow position: chr5:18665414-18665919 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 478

Conread position: 152-732
Cow position: chr5:10776795-10776211 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 12

Conread position: 152-736
Cow position: chr5:2530727-2531328 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 97

Conread position: 152-736
Cow position: chr5:45182639-45182046 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 91

Conread position: 152-736
Cow position: chr5:46775545-46776137 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 54

Conread position: 154-614
Cow position: chr5:56858244-56857769 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 313
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 45, 89

Conread position: 154-722
Cow position: chr5:53627299-53626719 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 386
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 53, 128

Conread position: 154-728
Cow position: chr5:61273704-61273138 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 62

Conread position: 154-732
Cow position: chr5:49128716-49129273 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 19

Conread position: 154-735
Cow position: chr5:10918255-10918854 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 252

Conread position: 154-736
Cow position: chr5:24098105-24098706 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 0

Conread position: 154-736
Cow position: chr5:29008819-29009410 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 319

Conread position: 154-736
Cow position: chr5:41551465-41550869 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 248

Conread position: 154-736
Cow position: chr5:46644167-46644744 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 177

Conread position: 154-758
Cow position: chr5:31102135-31101534 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 348

Conread position: 157-736
Cow position: chr5:48809253-48808658 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 471

Conread position: 158-388
Cow position: chr5:34167540-34167767 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 161
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 141, 30

Conread position: 158-472
Cow position: chr5:28570160-28570488 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 215
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 38, 44

Conread position: 158-570
Cow position: chr5:23227722-23228147 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 231

Conread position: 158-730
Cow position: chr5:57483085-57482495 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 0

Conread position: 159-722
Cow position: chr5:26090368-26089789 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 236

Conread position: 162-736
Cow position: chr5:54932750-54932161 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 8

Conread position: 164-440
Cow position: chr5:35299531-35299823 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 211
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 39, 0

Conread position: 164-572
Cow position: chr5:10844407-10843981 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 164-601
Cow position: chr5:53714724-53715176 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 0

Conread position: 164-696
Cow position: chr5:3963945-3964481 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 35

Conread position: 164-736
Cow position: chr5:4019731-4019141 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 318

Conread position: 164-736
Cow position: chr5:32771949-32772539 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 463

Conread position: 164-736
Cow position: chr5:46663473-46664060 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 82

Conread position: 164-736
Cow position: chr5:47831627-47831056 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 35

Conread position: 164-736
Cow position: chr5:58195471-58196059 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 19

Conread position: 165-732
Cow position: chr5:31706046-31706627 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 21

Conread position: 165-813
Cow position: chr5:41530101-41529447 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 210

Conread position: 179-609
Cow position: chr5:58061340-58060910 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 272
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 47, 129

Conread position: 192-813
Cow position: chr5:46659224-46659859 (view UCSC Genome Browser custom track)
Alignm length: 655
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 42

Conread position: 194-522
Cow position: chr5:27569652-27569997 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 57

Conread position: 207-736
Cow position: chr5:29042029-29042568 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 34

Conread position: 219-736
Cow position: chr5:44459007-44459540 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 30

Conread position: 223-623
Cow position: chr5:6188102-6188505 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 273
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 5, 152

Conread position: 223-736
Cow position: chr5:59060158-59060675 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 20

Conread position: 234-638
Cow position: chr5:16104222-16103819 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 271
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 63, 164

Conread position: 236-722
Cow position: chr5:47073455-47073944 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 318
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 61, 178

Conread position: 249-596
Cow position: chr5:7811990-7811639 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 232
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 58, 202

Conread position: 250-657
Cow position: chr5:25207181-25206762 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 154

Conread position: 252-736
Cow position: chr5:59481814-59482310 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 253

Conread position: 253-736
Cow position: chr5:49518227-49518715 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 117

Conread position: 253-813
Cow position: chr5:61020279-61019720 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 366
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 53, 82

Conread position: 287-811
Cow position: chr5:26069109-26068587 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 5

Conread position: 299-713
Cow position: chr5:39872042-39872435 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 267
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 146, 26

Conread position: 299-723
Cow position: chr5:26508063-26508480 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 276
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 46, 61

Conread position: 299-740
Cow position: chr5:14659474-14659041 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 67

Conread position: 300-595
Cow position: chr5:46005763-46005460 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 6

Conread position: 301-659
Cow position: chr5:4088423-4088785 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 312

Conread position: 301-736
Cow position: chr5:6589401-6588963 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 0

Conread position: 302-821
Cow position: chr5:41962613-41962089 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 68

Conread position: 303-525
Cow position: chr5:18653630-18653854 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 130
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 126, 0

Conread position: 305-723
Cow position: chr5:51319612-51319203 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 270
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 48, 11

Conread position: 309-813
Cow position: chr5:25001016-25000507 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 14

Conread position: 358-687
Cow position: chr5:58819957-58819626 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 256

Conread position: 366-824
Cow position: chr5:52433662-52434122 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 30

Conread position: 374-677
Cow position: chr5:5318063-5317759 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 131

Conread position: 412-682
Cow position: chr5:18653774-18654048 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 167
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 87, 124

Conread position: 429-812
Cow position: chr5:23755873-23755492 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 322

Conread position: 435-635
Cow position: chr5:52805123-52805322 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 161
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 186, 100

Conread position: 435-705
Cow position: chr5:24108833-24108564 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 176
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 68, 0

Conread position: 438-730
Cow position: chr5:20972273-20971995 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 0

Conread position: 449-713
Cow position: chr5:5786829-5786573 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 454-638
Cow position: chr5:39247610-39247424 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 141
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 11, 124

Conread position: 458-633
Cow position: chr5:27060465-27060294 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 77, 15

Conread position: 470-740
Cow position: chr5:27001403-27001669 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 194
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 151, 32

Conread position: 471-736
Cow position: chr5:73489769-73489504 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 170
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 126

Conread position: 473-736
Cow position: chr5:57977052-57977315 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 137

Conread position: 478-740
Cow position: chr5:29436169-29435905 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 188
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 141, 10

Conread position: 495-813
Cow position: chr5:27489064-27489391 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 52

Conread position: 524-735
Cow position: chr5:12644093-12643886 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 163
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 89, 0

Conread position: 535-724
Cow position: chr5:17774184-17773995 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 159
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 77

Conread position: 538-736
Cow position: chr5:23960456-23960258 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 118
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 83, 74

Conread position: 562-732
Cow position: chr5:76123696-76123528 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 137
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 50, 0

Conread position: 564-736
Cow position: chr5:27569998-27570169 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 142
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 57, 27

Conread position: 567-736
Cow position: chr5:34696490-34696660 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 138
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 148, 0

Conread position: 576-736
Cow position: chr5:10843522-10843362 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 85, 92

Conread position: 590-736
Cow position: chr5:9042949-9043095 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 31, 22

Conread position: 592-736
Cow position: chr5:54792722-54792578 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 597-813
Cow position: chr5:27682826-27682595 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 164
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 105, 71

Conread position: 610-730
Cow position: chr5:25206762-25206637 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 105
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 14, 0

Conread position: 614-813
Cow position: chr5:27059188-27058978 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 159
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 124, 11

Conread position: 614-813
Cow position: chr5:27060091-27059881 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 159
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 124, 11

Show alignments to all cow chromosomes.