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Cow genome map

           
Conread name:
           
Ss1.1-rspc011_k9.5
        

               
Conread position:
               
53-616
               

               
Cow position:
               
chrX:22131356-22130793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 100
               

               
Conread position:
               
67-732
               

               
Cow position:
               
chrX:24122566-24121890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
685
               

               
Alignm identity:
               
510
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 83
               

               
Conread position:
               
69-728
               

               
Cow position:
               
chrX:32095606-32094937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
680
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 9
               

               
Conread position:
               
69-736
               

               
Cow position:
               
chrX:18955162-18954491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
690
               

               
Alignm identity:
               
493
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 28
               

               
Conread position:
               
69-797
               

               
Cow position:
               
chrX:13413763-13413020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
752
               

               
Alignm identity:
               
529
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 28
               

               
Conread position:
               
72-735
               

               
Cow position:
               
chrX:26767839-26767165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
684
               

               
Alignm identity:
               
473
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 46
               

               
Conread position:
               
75-534
               

               
Cow position:
               
chrX:13052027-13052496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 55
               

               
Conread position:
               
76-736
               

               
Cow position:
               
chrX:30056016-30056679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
694
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 145
               

               
Conread position:
               
78-376
               

               
Cow position:
               
chrX:11534849-11535153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
147, 72
               

               
Conread position:
               
78-473
               

               
Cow position:
               
chrX:5834798-5834399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 72
               

               
Conread position:
               
78-660
               

               
Cow position:
               
chrX:16236670-16237267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 260
               

               
Conread position:
               
78-732
               

               
Cow position:
               
chrX:1546276-1546965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
690
               

               
Alignm identity:
               
498
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
78-736
               

               
Cow position:
               
chrX:12655405-12654726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
688
               

               
Alignm identity:
               
489
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 31
               

               
Conread position:
               
78-736
               

               
Cow position:
               
chrX:21222289-21222962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
677
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 59
               

               
Conread position:
               
78-736
               

               
Cow position:
               
chrX:21290122-21289457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
674
               

               
Alignm identity:
               
498
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 72
               

               
Conread position:
               
78-736
               

               
Cow position:
               
chrX:21305173-21304492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
687
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 23
               

               
Conread position:
               
78-736
               

               
Cow position:
               
chrX:21602252-21602913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
677
               

               
Alignm identity:
               
504
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 28
               

               
Conread position:
               
78-736
               

               
Cow position:
               
chrX:24137032-24136371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
676
               

               
Alignm identity:
               
491
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 72
               

               
Conread position:
               
78-754
               

               
Cow position:
               
chrX:26428675-26427984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
711
               

               
Alignm identity:
               
456
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 128
               

               
Conread position:
               
78-813
               

               
Cow position:
               
chrX:21270824-21270080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
758
               

               
Alignm identity:
               
483
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 97
               

               
Conread position:
               
78-813
               

               
Cow position:
               
chrX:28549263-28549985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
760
               

               
Alignm identity:
               
509
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 69
               

               
Conread position:
               
78-815
               

               
Cow position:
               
chrX:2142656-2143403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
775
               

               
Alignm identity:
               
522
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 52
               

               
Conread position:
               
78-815
               

               
Cow position:
               
chrX:30369616-30368895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
753
               

               
Alignm identity:
               
507
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 165
               

               
Conread position:
               
78-816
               

               
Cow position:
               
chrX:20698921-20698175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
779
               

               
Alignm identity:
               
521
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 318
               

               
Conread position:
               
78-820
               

               
Cow position:
               
chrX:18532347-18533117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
783
               

               
Alignm identity:
               
543
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 308
               

               
Conread position:
               
79-741
               

               
Cow position:
               
chrX:21828878-21829563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
686
               

               
Alignm identity:
               
491
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
81-588
               

               
Cow position:
               
chrX:4795290-4795813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 69
               

               
Conread position:
               
81-732
               

               
Cow position:
               
chrX:21633215-21632557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
670
               

               
Alignm identity:
               
496
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 26
               

               
Conread position:
               
81-735
               

               
Cow position:
               
chrX:24275037-24275703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
675
               

               
Alignm identity:
               
487
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 22
               

               
Conread position:
               
81-736
               

               
Cow position:
               
chrX:20803504-20804161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
669
               

               
Alignm identity:
               
506
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 70
               

               
Conread position:
               
81-740
               

               
Cow position:
               
chrX:29882878-29882191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
697
               

               
Alignm identity:
               
450
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 32
               

               
Conread position:
               
81-813
               

               
Cow position:
               
chrX:17668925-17668183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
763
               

               
Alignm identity:
               
545
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 73
               

               
Conread position:
               
84-459
               

               
Cow position:
               
chrX:25332449-25332846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 47
               

               
Conread position:
               
84-735
               

               
Cow position:
               
chrX:13007263-13006592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
677
               

               
Alignm identity:
               
492
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 66
               

               
Conread position:
               
84-736
               

               
Cow position:
               
chrX:5299849-5299189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
680
               

               
Alignm identity:
               
455
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 319
               

               
Conread position:
               
87-405
               

               
Cow position:
               
chrX:26628943-26628619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 63
               

               
Conread position:
               
87-437
               

               
Cow position:
               
chrX:28651763-28651395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
9, 153
               

               
Conread position:
               
88-728
               

               
Cow position:
               
chrX:2787840-2787203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
657
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
125, 55
               

               
Conread position:
               
98-736
               

               
Cow position:
               
chrX:15180053-15179397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
660
               

               
Alignm identity:
               
464
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 5
               

               
Conread position:
               
99-523
               

               
Cow position:
               
chrX:39717182-39717619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 49
               

               
Conread position:
               
103-757
               

               
Cow position:
               
chrX:30184500-30183840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
669
               

               
Alignm identity:
               
470
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 6
               

               
Conread position:
               
107-737
               

               
Cow position:
               
chrX:29794733-29794080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
661
               

               
Alignm identity:
               
468
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 70
               

               
Conread position:
               
109-737
               

               
Cow position:
               
chrX:19927707-19928327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
651
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 42
               

               
Conread position:
               
112-736
               

               
Cow position:
               
chrX:20796006-20796648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 47
               

               
Conread position:
               
143-736
               

               
Cow position:
               
chrX:30142957-30142362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 13
               

               
Conread position:
               
148-671
               

               
Cow position:
               
chrX:11669005-11668473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 17
               

               
Conread position:
               
148-736
               

               
Cow position:
               
chrX:23456145-23455544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
611
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 242
               

               
Conread position:
               
148-736
               

               
Cow position:
               
chrX:32466679-32467286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
150-522
               

               
Cow position:
               
chrX:24325718-24325325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 386
               

               
Conread position:
               
150-633
               

               
Cow position:
               
chrX:30666511-30666008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 374
               

               
Conread position:
               
150-681
               

               
Cow position:
               
chrX:12289507-12288957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 94
               

               
Conread position:
               
150-736
               

               
Cow position:
               
chrX:8586522-8587128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 137
               

               
Conread position:
               
150-736
               

               
Cow position:
               
chrX:12280828-12280236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 313
               

               
Conread position:
               
150-736
               

               
Cow position:
               
chrX:12804424-12803830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 81
               

               
Conread position:
               
150-736
               

               
Cow position:
               
chrX:18218831-18219431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 96
               

               
Conread position:
               
150-736
               

               
Cow position:
               
chrX:22526174-22525570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 480
               

               
Conread position:
               
150-736
               

               
Cow position:
               
chrX:26759160-26758571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 359
               

               
Conread position:
               
150-736
               

               
Cow position:
               
chrX:28759192-28758607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 71
               

               
Conread position:
               
150-736
               

               
Cow position:
               
chrX:39521334-39521941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 480
               

               
Conread position:
               
151-335
               

               
Cow position:
               
chrX:23276551-23276738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
68, 144
               

               
Conread position:
               
151-454
               

               
Cow position:
               
chrX:38145492-38145812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
68, 142
               

               
Conread position:
               
151-463
               

               
Cow position:
               
chrX:41151659-41151987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
68, 279
               

               
Conread position:
               
151-481
               

               
Cow position:
               
chrX:29092935-29093282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 332
               

               
Conread position:
               
151-709
               

               
Cow position:
               
chrX:16017691-16017136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 167
               

               
Conread position:
               
151-732
               

               
Cow position:
               
chrX:2483208-2482608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
151-732
               

               
Cow position:
               
chrX:29854132-29853536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 100
               

               
Conread position:
               
151-736
               

               
Cow position:
               
chrX:970206-970801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 52
               

               
Conread position:
               
151-736
               

               
Cow position:
               
chrX:15127811-15127208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 457
               

               
Conread position:
               
151-736
               

               
Cow position:
               
chrX:15598361-15598964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
151-736
               

               
Cow position:
               
chrX:16698733-16699334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 219
               

               
Conread position:
               
151-736
               

               
Cow position:
               
chrX:22487620-22488215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 308
               

               
Conread position:
               
151-736
               

               
Cow position:
               
chrX:23392170-23391565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
151-736
               

               
Cow position:
               
chrX:26527407-26528010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
151-736
               

               
Cow position:
               
chrX:30232672-30232074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 100
               

               
Conread position:
               
152-710
               

               
Cow position:
               
chrX:6283625-6283084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 37
               

               
Conread position:
               
152-727
               

               
Cow position:
               
chrX:26401037-26400444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 102
               

               
Conread position:
               
152-736
               

               
Cow position:
               
chrX:5862827-5863432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
152-736
               

               
Cow position:
               
chrX:6909902-6909312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
611
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 260
               

               
Conread position:
               
152-736
               

               
Cow position:
               
chrX:8670023-8670626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 330
               

               
Conread position:
               
153-736
               

               
Cow position:
               
chrX:7093038-7093632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 68
               

               
Conread position:
               
153-736
               

               
Cow position:
               
chrX:9007774-9008372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 376
               

               
Conread position:
               
154-368
               

               
Cow position:
               
chrX:25187094-25187324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
154-404
               

               
Cow position:
               
chrX:21586471-21586735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
62, 84
               

               
Conread position:
               
154-516
               

               
Cow position:
               
chrX:30046680-30046302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
154-636
               

               
Cow position:
               
chrX:7533533-7534005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
45, 83
               

               
Conread position:
               
154-699
               

               
Cow position:
               
chrX:29813149-29813702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
70, 81
               

               
Conread position:
               
154-701
               

               
Cow position:
               
chrX:21489669-21490228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 435
               

               
Conread position:
               
154-732
               

               
Cow position:
               
chrX:27990342-27989751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 303
               

               
Conread position:
               
154-736
               

               
Cow position:
               
chrX:1833273-1833862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 462
               

               
Conread position:
               
154-736
               

               
Cow position:
               
chrX:12478156-12478754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 258
               

               
Conread position:
               
154-736
               

               
Cow position:
               
chrX:14787432-14786838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 90
               

               
Conread position:
               
154-736
               

               
Cow position:
               
chrX:20316619-20316021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 110
               

               
Conread position:
               
154-736
               

               
Cow position:
               
chrX:28634979-28634382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 35
               

               
Conread position:
               
154-736
               

               
Cow position:
               
chrX:30179550-30178961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 73
               

               
Conread position:
               
154-736
               

               
Cow position:
               
chrX:35017262-35017843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
451
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 72
               

               
Conread position:
               
154-736
               

               
Cow position:
               
chrX:40057626-40057031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 26
               

               
Conread position:
               
157-721
               

               
Cow position:
               
chrX:22893923-22893350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 74
               

               
Conread position:
               
157-731
               

               
Cow position:
               
chrX:22813842-22814411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 27
               

               
Conread position:
               
157-736
               

               
Cow position:
               
chrX:22777753-22778346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
462
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 466
               

               
Conread position:
               
157-736
               

               
Cow position:
               
chrX:30710792-30711383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 349
               

               
Conread position:
               
158-658
               

               
Cow position:
               
chrX:19185505-19185012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 75
               

               
Conread position:
               
158-721
               

               
Cow position:
               
chrX:17632388-17631810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 43
               

               
Conread position:
               
158-735
               

               
Cow position:
               
chrX:23018771-23019357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 233
               

               
Conread position:
               
159-684
               

               
Cow position:
               
chrX:3085463-3084920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 443
               

               
Conread position:
               
159-736
               

               
Cow position:
               
chrX:29951126-29950546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 252
               

               
Conread position:
               
164-459
               

               
Cow position:
               
chrX:20360486-20360176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
39, 271
               

               
Conread position:
               
164-461
               

               
Cow position:
               
chrX:28522253-28521941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
39, 176
               

               
Conread position:
               
164-552
               

               
Cow position:
               
chrX:3421995-3421591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 267
               

               
Conread position:
               
164-587
               

               
Cow position:
               
chrX:24380755-24381197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 438
               

               
Conread position:
               
164-645
               

               
Cow position:
               
chrX:8479150-8479644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 86
               

               
Conread position:
               
164-727
               

               
Cow position:
               
chrX:2860355-2859776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 464
               

               
Conread position:
               
164-727
               

               
Cow position:
               
chrX:5395518-5394937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 87
               

               
Conread position:
               
164-728
               

               
Cow position:
               
chrX:24484972-24484387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 371
               

               
Conread position:
               
164-732
               

               
Cow position:
               
chrX:8454200-8454782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 223
               

               
Conread position:
               
164-732
               

               
Cow position:
               
chrX:30010501-30011069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
164-735
               

               
Cow position:
               
chrX:7029634-7030221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 245
               

               
Conread position:
               
164-736
               

               
Cow position:
               
chrX:2101312-2101893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 80
               

               
Conread position:
               
164-736
               

               
Cow position:
               
chrX:2603492-2604082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 386
               

               
Conread position:
               
164-736
               

               
Cow position:
               
chrX:5324264-5323689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 63
               

               
Conread position:
               
164-736
               

               
Cow position:
               
chrX:6873628-6873039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 249
               

               
Conread position:
               
164-736
               

               
Cow position:
               
chrX:7751351-7751934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 39
               

               
Conread position:
               
164-736
               

               
Cow position:
               
chrX:9193200-9192610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 466
               

               
Conread position:
               
164-736
               

               
Cow position:
               
chrX:10532114-10531524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 462
               

               
Conread position:
               
164-736
               

               
Cow position:
               
chrX:13398669-13398086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 445
               

               
Conread position:
               
164-736
               

               
Cow position:
               
chrX:16275136-16275711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 35
               

               
Conread position:
               
164-736
               

               
Cow position:
               
chrX:16363678-16363090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 248
               

               
Conread position:
               
164-736
               

               
Cow position:
               
chrX:17479078-17478488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
164-736
               

               
Cow position:
               
chrX:21339847-21340438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 182
               

               
Conread position:
               
164-736
               

               
Cow position:
               
chrX:22619869-22619274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 470
               

               
Conread position:
               
164-736
               

               
Cow position:
               
chrX:23046591-23047178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 384
               

               
Conread position:
               
164-736
               

               
Cow position:
               
chrX:24088847-24089436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 244
               

               
Conread position:
               
164-736
               

               
Cow position:
               
chrX:27426872-27426286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 466
               

               
Conread position:
               
164-736
               

               
Cow position:
               
chrX:30174215-30173637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 107
               

               
Conread position:
               
164-736
               

               
Cow position:
               
chrX:31187790-31187211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 249
               

               
Conread position:
               
164-736
               

               
Cow position:
               
chrX:37848457-37849048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 234
               

               
Conread position:
               
165-538
               

               
Cow position:
               
chrX:8963603-8963224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 78
               

               
Conread position:
               
165-593
               

               
Cow position:
               
chrX:12341641-12342083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 220
               

               
Conread position:
               
165-736
               

               
Cow position:
               
chrX:13077244-13076663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 284
               

               
Conread position:
               
165-736
               

               
Cow position:
               
chrX:13097818-13097237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 284
               

               
Conread position:
               
167-676
               

               
Cow position:
               
chrX:2380236-2380746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
60, 283
               

               
Conread position:
               
167-736
               

               
Cow position:
               
chrX:5284278-5283701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 70
               

               
Conread position:
               
170-736
               

               
Cow position:
               
chrX:27494155-27494744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
173-736
               

               
Cow position:
               
chrX:26504649-26505218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 234
               

               
Conread position:
               
184-565
               

               
Cow position:
               
chrX:6276125-6275730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 362
               

               
Conread position:
               
210-740
               

               
Cow position:
               
chrX:12998066-12997540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 197
               

               
Conread position:
               
218-739
               

               
Cow position:
               
chrX:2563352-2562820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 25
               

               
Conread position:
               
219-732
               

               
Cow position:
               
chrX:11465495-11464972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 256
               

               
Conread position:
               
219-736
               

               
Cow position:
               
chrX:982173-982672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
226, 22
               

               
Conread position:
               
219-736
               

               
Cow position:
               
chrX:7481108-7481637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 174
               

               
Conread position:
               
219-740
               

               
Cow position:
               
chrX:319972-320507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 190
               

               
Conread position:
               
219-817
               

               
Cow position:
               
chrX:24114650-24114064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
615
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
16, 89
               

               
Conread position:
               
220-761
               

               
Cow position:
               
chrX:29873055-29872494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
243-573
               

               
Cow position:
               
chrX:37757308-37757644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
54, 148
               

               
Conread position:
               
250-720
               

               
Cow position:
               
chrX:21794634-21795113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 181
               

               
Conread position:
               
250-724
               

               
Cow position:
               
chrX:28562676-28562192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 372
               

               
Conread position:
               
256-736
               

               
Cow position:
               
chrX:18660232-18659749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 78
               

               
Conread position:
               
272-530
               

               
Cow position:
               
chrX:16935988-16935728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
24, 125
               

               
Conread position:
               
273-680
               

               
Cow position:
               
chrX:5336898-5336491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
172, 156
               

               
Conread position:
               
288-638
               

               
Cow position:
               
chrX:32468303-32468640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
39, 24
               

               
Conread position:
               
299-732
               

               
Cow position:
               
chrX:29285030-29285447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 15
               

               
Conread position:
               
301-560
               

               
Cow position:
               
chrX:31198205-31198466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
301-736
               

               
Cow position:
               
chrX:9124956-9125393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 310
               

               
Conread position:
               
301-736
               

               
Cow position:
               
chrX:23041518-23041089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
301-740
               

               
Cow position:
               
chrX:28875808-28875384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
11, 54
               

               
Conread position:
               
302-736
               

               
Cow position:
               
chrX:35529458-35529896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 309
               

               
Conread position:
               
303-586
               

               
Cow position:
               
chrX:35020585-35020871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
139, 63
               

               
Conread position:
               
303-722
               

               
Cow position:
               
chrX:6015858-6015441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 35
               

               
Conread position:
               
303-739
               

               
Cow position:
               
chrX:2537172-2536744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 279
               

               
Conread position:
               
303-791
               

               
Cow position:
               
chrX:5839937-5840431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 71
               

               
Conread position:
               
304-736
               

               
Cow position:
               
chrX:22583099-22582665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 50
               

               
Conread position:
               
307-791
               

               
Cow position:
               
chrX:34988484-34988996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 89
               

               
Conread position:
               
317-736
               

               
Cow position:
               
chrX:41411409-41410987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 298
               

               
Conread position:
               
329-700
               

               
Cow position:
               
chrX:17250702-17250333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
111, 65
               

               
Conread position:
               
335-736
               

               
Cow position:
               
chrX:12670229-12669830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 51
               

               
Conread position:
               
341-813
               

               
Cow position:
               
chrX:40247677-40247202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 55
               

               
Conread position:
               
342-736
               

               
Cow position:
               
chrX:29947342-29947741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 272
               

               
Conread position:
               
344-736
               

               
Cow position:
               
chrX:39564288-39563897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 7
               

               
Conread position:
               
355-736
               

               
Cow position:
               
chrX:28603804-28603424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 119
               

               
Conread position:
               
377-736
               

               
Cow position:
               
chrX:37811835-37812196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
392-638
               

               
Cow position:
               
chrX:21586855-21587101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 86
               

               
Conread position:
               
395-812
               

               
Cow position:
               
chrX:44386164-44386589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 29
               

               
Conread position:
               
397-736
               

               
Cow position:
               
chrX:1943350-1943010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 81
               

               
Conread position:
               
397-736
               

               
Cow position:
               
chrX:26628339-26627998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
403-813
               

               
Cow position:
               
chrX:12973532-12973110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 308
               

               
Conread position:
               
424-736
               

               
Cow position:
               
chrX:28584700-28585014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
429-822
               

               
Cow position:
               
chrX:35390368-35389975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
16, 104
               

               
Conread position:
               
438-735
               

               
Cow position:
               
chrX:16461413-16461703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 171
               

               
Conread position:
               
447-736
               

               
Cow position:
               
chrX:38146050-38146339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 162
               

               
Conread position:
               
454-730
               

               
Cow position:
               
chrX:5834212-5833936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 158
               

               
Conread position:
               
468-811
               

               
Cow position:
               
chrX:29757926-29758271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
89, 97
               

               
Conread position:
               
471-740
               

               
Cow position:
               
chrX:30133066-30132796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
42, 13
               

               
Conread position:
               
478-740
               

               
Cow position:
               
chrX:29998569-29998826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
143, 60
               

               
Conread position:
               
486-721
               

               
Cow position:
               
chrX:38576039-38575800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 78
               

               
Conread position:
               
495-738
               

               
Cow position:
               
chrX:11663712-11663469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 117
               

               
Conread position:
               
496-815
               

               
Cow position:
               
chrX:31724820-31725148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 113
               

               
Conread position:
               
511-730
               

               
Cow position:
               
chrX:39719246-39719465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 160
               

               
Conread position:
               
512-740
               

               
Cow position:
               
chrX:24139216-24138989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
221, 161
               

               
Conread position:
               
531-736
               

               
Cow position:
               
chrX:31493253-31493455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
537-736
               

               
Cow position:
               
chrX:30044310-30044111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 75
               

               
Conread position:
               
537-736
               

               
Cow position:
               
chrX:47457863-47457663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
90, 60
               

               
Conread position:
               
541-736
               

               
Cow position:
               
chrX:17050932-17051128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
544-736
               

               
Cow position:
               
chrX:12353082-12353274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
77, 65
               

               
Conread position:
               
565-738
               

               
Cow position:
               
chrX:16812730-16812558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
56, 47
               

               
Conread position:
               
566-732
               

               
Cow position:
               
chrX:35021129-35021291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
567-813
               

               
Cow position:
               
chrX:13052497-13052746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
167, 72
               

               
Conread position:
               
570-736
               

               
Cow position:
               
chrX:23276890-23277056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
575-736
               

               
Cow position:
               
chrX:20360174-20360017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
46, 19
               

               
Conread position:
               
581-736
               

               
Cow position:
               
chrX:37142711-37142556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
41, 31
               

               
Conread position:
               
582-736
               

               
Cow position:
               
chrX:11433581-11433735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
39, 30
               

               
Conread position:
               
582-813
               

               
Cow position:
               
chrX:22130800-22130557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
39, 30
               

               
Conread position:
               
584-736
               

               
Cow position:
               
chrX:6275736-6275583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
37, 28
               

               
Conread position:
               
590-724
               

               
Cow position:
               
chrX:3421574-3421441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
34, 22
               

               
Conread position:
               
591-736
               

               
Cow position:
               
chrX:29096092-29096235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
612-736
               

               
Cow position:
               
chrX:30055827-30055702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
621-736
               

               
Cow position:
               
chrX:41851480-41851365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
627-736
               

               
Cow position:
               
chrX:30990016-30990127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
628-815
               

               
Cow position:
               
chrX:21587117-21587316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
112, 172
               
Show alignments to all cow chromosomes.