Cow genome map
| Conread name: | Ss1.1-rspc025_m8.5 |
| Conread position: | 1-448 |
| Cow position: | chr12:32088852-32088406 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 292 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 21, 302 |
| Conread position: | 1-514 |
| Cow position: | chr12:13376110-13376639 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 338 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 22, 136 |
| Conread position: | 1-563 |
| Cow position: | chr12:32120715-32121301 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 364 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 25, 130 |
| Conread position: | 1-577 |
| Cow position: | chr12:9988083-9988689 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 377 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 21, 140 |
| Conread position: | 3-281 |
| Cow position: | chr12:9406103-9406397 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 203 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 19, 37 |
| Conread position: | 3-283 |
| Cow position: | chr12:27852039-27852333 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 3-296 |
| Cow position: | chr12:22480733-22480428 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 19, 39 |
| Conread position: | 3-303 |
| Cow position: | chr12:35367992-35367697 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 219, 34 |
| Conread position: | 3-448 |
| Cow position: | chr12:15821334-15820871 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 294 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 22, 193 |
| Conread position: | 3-451 |
| Cow position: | chr12:24558187-24557716 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 301 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 19, 395 |
| Conread position: | 3-577 |
| Cow position: | chr12:11582767-11582169 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 371 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 19, 61 |
| Conread position: | 3-577 |
| Cow position: | chr12:12754551-12755156 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 381 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 19, 268 |
| Conread position: | 3-579 |
| Cow position: | chr12:25143140-25143729 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 379 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 19, 86 |
| Conread position: | 3-593 |
| Cow position: | chr12:5713577-5712944 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 396 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 20, 385 |
| Conread position: | 4-302 |
| Cow position: | chr12:2229185-2228868 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-302 |
| Cow position: | chr12:12928296-12928613 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-302 |
| Cow position: | chr12:14214675-14214358 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-302 |
| Cow position: | chr12:17787027-17787344 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-324 |
| Cow position: | chr12:28755058-28754729 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 17, 37 |
| Conread position: | 4-433 |
| Cow position: | chr12:39135846-39136301 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 309 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 17, 72 |
| Conread position: | 4-555 |
| Cow position: | chr12:10402778-10403370 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 383 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 18, 311 |
| Conread position: | 4-577 |
| Cow position: | chr12:39930779-39930167 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 373 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 18, 379 |
| Conread position: | 7-307 |
| Cow position: | chr12:48468404-48468101 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 16, 164 |
| Conread position: | 7-318 |
| Cow position: | chr12:47487088-47487418 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 113, 29 |
| Conread position: | 8-437 |
| Cow position: | chr12:6627896-6627462 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 291 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 98, 189 |
| Conread position: | 8-565 |
| Cow position: | chr12:5918609-5919190 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 378 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 11, 25 |
| Conread position: | 11-327 |
| Cow position: | chr12:23944770-23944434 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 13-303 |
| Cow position: | chr12:14852656-14852961 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 6, 251 |
| Conread position: | 14-579 |
| Cow position: | chr12:7076913-7077504 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 382 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 81, 194 |
| Conread position: | 15-464 |
| Cow position: | chr12:27048752-27048304 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 306 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 123, 22 |
| Conread position: | 17-315 |
| Cow position: | chr12:21946575-21946274 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 115, 64 |
| Conread position: | 17-417 |
| Cow position: | chr12:29747672-29748078 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 265 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 66, 199 |
| Conread position: | 21-293 |
| Cow position: | chr12:17969911-17969627 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 101, 238 |
| Conread position: | 31-303 |
| Cow position: | chr12:28840394-28840104 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 90, 6 |
| Conread position: | 44-287 |
| Cow position: | chr12:45540947-45540707 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 178, 84 |
| Conread position: | 46-462 |
| Cow position: | chr12:9396983-9397419 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 294 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 75, 329 |
| Conread position: | 55-294 |
| Cow position: | chr12:47940382-47940619 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 113, 20 |
| Conread position: | 71-579 |
| Cow position: | chr12:19188416-19187891 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 341 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 50, 7 |
| Conread position: | 76-293 |
| Cow position: | chr12:4637029-4637242 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 54, 73 |
| Conread position: | 83-426 |
| Cow position: | chr12:5480370-5480733 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 239 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 26, 295 |
| Conread position: | 164-579 |
| Cow position: | chr12:15081012-15080590 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 276 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 58, 175 |
| Conread position: | 167-294 |
| Cow position: | chr12:18404291-18404161 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
Show alignments to all cow chromosomes.