Cow genome map
| Conread name: | Ss1.1-rspc025_m8.5 |
| Conread position: | 1-254 |
| Cow position: | chr13:831633-831894 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 17, 32 |
| Conread position: | 1-255 |
| Cow position: | chr13:26633128-26632864 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 22, 125 |
| Conread position: | 1-302 |
| Cow position: | chr13:13312998-13312682 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 20, 79 |
| Conread position: | 1-302 |
| Cow position: | chr13:16248536-16248852 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-452 |
| Cow position: | chr13:43034295-43033823 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 320 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 113, 14 |
| Conread position: | 1-487 |
| Cow position: | chr13:2508545-2508031 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 339 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 21, 77 |
| Conread position: | 2-307 |
| Cow position: | chr13:27013030-27012727 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 19, 40 |
| Conread position: | 3-214 |
| Cow position: | chr13:46530020-46529797 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 13, 102 |
| Conread position: | 3-303 |
| Cow position: | chr13:34123307-34123604 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 15, 49 |
| Conread position: | 3-303 |
| Cow position: | chr13:60967374-60967690 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 3-579 |
| Cow position: | chr13:38612621-38612012 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 382 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 19, 382 |
| Conread position: | 3-616 |
| Cow position: | chr13:5542434-5543057 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 407 |
| Conread position: | 4-276 |
| Cow position: | chr13:49355348-49355060 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 18, 260 |
| Conread position: | 4-292 |
| Cow position: | chr13:42896320-42896019 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 215 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 18, 76 |
| Conread position: | 4-294 |
| Cow position: | chr13:3775475-3775175 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 204 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 15, 73 |
| Conread position: | 4-296 |
| Cow position: | chr13:2725401-2725712 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-302 |
| Cow position: | chr13:4615412-4615100 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 18, 169 |
| Conread position: | 4-302 |
| Cow position: | chr13:6869709-6869397 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 18, 241 |
| Conread position: | 4-358 |
| Cow position: | chr13:24825651-24826033 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 252 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 16, 252 |
| Conread position: | 4-509 |
| Cow position: | chr13:49062717-49062215 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 349 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 32, 12 |
| Conread position: | 4-563 |
| Cow position: | chr13:11390664-11390062 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 384 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 18, 367 |
| Conread position: | 4-579 |
| Cow position: | chr13:44323563-44324175 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 397 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 18, 328 |
| Conread position: | 4-580 |
| Cow position: | chr13:5328633-5328051 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 373 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 19, 94 |
| Conread position: | 4-585 |
| Cow position: | chr13:46463021-46462429 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 404 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 18, 38 |
| Conread position: | 4-593 |
| Cow position: | chr13:21855730-21855116 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 395 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 18, 191 |
| Conread position: | 7-284 |
| Cow position: | chr13:49805555-49805834 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 112, 175 |
| Conread position: | 7-292 |
| Cow position: | chr13:24579601-24579888 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 198 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 13, 152 |
| Conread position: | 7-297 |
| Cow position: | chr13:40832050-40832339 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 15, 33 |
| Conread position: | 7-367 |
| Cow position: | chr13:23151910-23151527 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 264 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 16, 35 |
| Conread position: | 8-299 |
| Cow position: | chr13:58471531-58471831 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 14, 162 |
| Conread position: | 8-453 |
| Cow position: | chr13:25884088-25883613 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 301 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 11, 378 |
| Conread position: | 14-450 |
| Cow position: | chr13:55964129-55963688 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 282 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 21, 66 |
| Conread position: | 16-552 |
| Cow position: | chr13:34094537-34095103 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 366 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 7, 30 |
| Conread position: | 17-302 |
| Cow position: | chr13:27540489-27540195 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 99, 235 |
| Conread position: | 17-303 |
| Cow position: | chr13:26822747-26823042 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 104, 64 |
| Conread position: | 17-437 |
| Cow position: | chr13:12906489-12906046 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 297 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 79, 309 |
| Conread position: | 17-505 |
| Cow position: | chr13:38625590-38625079 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 47 |
| Conread position: | 17-556 |
| Cow position: | chr13:33584334-33583780 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 351 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 91, 46 |
| Conread position: | 17-586 |
| Cow position: | chr13:51184700-51184092 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 394 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 98, 211 |
| Conread position: | 18-579 |
| Cow position: | chr13:19141910-19141325 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 381 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 103, 204 |
| Conread position: | 30-450 |
| Cow position: | chr13:21587910-21587476 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 292 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 26, 9 |
| Conread position: | 42-393 |
| Cow position: | chr13:45657968-45657603 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 252 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 86, 197 |
| Conread position: | 44-302 |
| Cow position: | chr13:44645358-44645624 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 65, 38 |
| Conread position: | 44-447 |
| Cow position: | chr13:44426440-44426872 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 74, 350 |
| Conread position: | 78-457 |
| Cow position: | chr13:92515-92919 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 266 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 38, 102 |
| Conread position: | 85-458 |
| Cow position: | chr13:37544458-37544065 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 36, 76 |
| Conread position: | 129-457 |
| Cow position: | chr13:21723188-21722853 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 230 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 91, 172 |
| Conread position: | 130-330 |
| Cow position: | chr13:39268760-39268547 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 45, 63 |
| Conread position: | 130-335 |
| Cow position: | chr13:39629770-39629977 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 92, 124 |
| Conread position: | 130-453 |
| Cow position: | chr13:34016843-34017176 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 85, 120 |
| Conread position: | 130-556 |
| Cow position: | chr13:28341747-28342201 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 289 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 92, 243 |
| Conread position: | 154-281 |
| Cow position: | chr13:11243736-11243865 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 169-579 |
| Cow position: | chr13:41362828-41362398 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 278 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 51, 96 |
| Conread position: | 171-329 |
| Cow position: | chr13:5779925-5779762 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 177-453 |
| Cow position: | chr13:45648691-45648405 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 45, 199 |
| Conread position: | 241-579 |
| Cow position: | chr13:49354573-49354232 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 42, 121 |
Show alignments to all cow chromosomes.