Cow genome map
| Conread name: | Ss1.1-rspc025_m8.5 |
| Conread position: | 1-294 |
| Cow position: | chr14:16190822-16190519 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 22, 99 |
| Conread position: | 1-452 |
| Cow position: | chr14:24980826-24980344 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 314 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 21, 365 |
| Conread position: | 1-585 |
| Cow position: | chr14:11564809-11564187 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 389 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 21, 282 |
| Conread position: | 3-254 |
| Cow position: | chr14:38379924-38380185 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 19, 141 |
| Conread position: | 3-279 |
| Cow position: | chr14:34055751-34055476 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 16, 94 |
| Conread position: | 3-302 |
| Cow position: | chr14:21201193-21200880 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 19, 80 |
| Conread position: | 3-303 |
| Cow position: | chr14:21919967-21920275 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 206 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 32, 40 |
| Conread position: | 3-305 |
| Cow position: | chr14:5501200-5500885 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 19, 246 |
| Conread position: | 3-306 |
| Cow position: | chr14:12951392-12951074 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 19, 311 |
| Conread position: | 3-562 |
| Cow position: | chr14:11461802-11462405 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 383 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 19, 142 |
| Conread position: | 3-565 |
| Cow position: | chr14:424449-423859 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 370 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 20, 242 |
| Conread position: | 4-281 |
| Cow position: | chr14:5076248-5075959 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-292 |
| Cow position: | chr14:11544990-11544694 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 18, 140 |
| Conread position: | 4-302 |
| Cow position: | chr14:9449270-9449573 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-302 |
| Cow position: | chr14:31737255-31736938 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-302 |
| Cow position: | chr14:31881613-31881929 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-302 |
| Cow position: | chr14:46960663-46960346 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-303 |
| Cow position: | chr14:41920749-41920444 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 117, 17 |
| Conread position: | 4-337 |
| Cow position: | chr14:40482780-40482438 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 117, 169 |
| Conread position: | 4-452 |
| Cow position: | chr14:20803806-20804244 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 291 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 19, 47 |
| Conread position: | 7-254 |
| Cow position: | chr14:46224314-46224563 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 9, 130 |
| Conread position: | 7-274 |
| Cow position: | chr14:21595560-21595296 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 16, 35 |
| Conread position: | 8-303 |
| Cow position: | chr14:195001-194696 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 11, 91 |
| Conread position: | 8-432 |
| Cow position: | chr14:20387090-20387527 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 298 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 13, 92 |
| Conread position: | 11-284 |
| Cow position: | chr14:11474059-11474344 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 11-296 |
| Cow position: | chr14:6046377-6046083 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 94, 259 |
| Conread position: | 11-435 |
| Cow position: | chr14:14704766-14705196 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 294 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 11, 62 |
| Conread position: | 12-303 |
| Cow position: | chr14:9845103-9845409 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 13, 195 |
| Conread position: | 13-579 |
| Cow position: | chr14:26496513-26497117 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 388 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 105, 346 |
| Conread position: | 14-451 |
| Cow position: | chr14:36174224-36173758 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 306 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 106, 36 |
| Conread position: | 14-556 |
| Cow position: | chr14:21046429-21046986 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 351 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 93, 262 |
| Conread position: | 17-296 |
| Cow position: | chr14:20467395-20467100 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 53, 61 |
| Conread position: | 17-330 |
| Cow position: | chr14:34765339-34765004 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 50, 45 |
| Conread position: | 17-559 |
| Cow position: | chr14:33515783-33515212 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 365 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 96, 53 |
| Conread position: | 17-579 |
| Cow position: | chr14:40666318-40665727 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 367 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 105, 259 |
| Conread position: | 18-303 |
| Cow position: | chr14:24966376-24966676 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 23-325 |
| Cow position: | chr14:21097688-21097373 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 99, 153 |
| Conread position: | 28-456 |
| Cow position: | chr14:21372979-21373416 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 78, 22 |
| Conread position: | 28-462 |
| Cow position: | chr14:36898168-36898631 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 304 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 93, 248 |
| Conread position: | 37-568 |
| Cow position: | chr14:14230588-14230035 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 345 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 85, 244 |
| Conread position: | 40-413 |
| Cow position: | chr14:11580903-11581289 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 72, 229 |
| Conread position: | 44-330 |
| Cow position: | chr14:36327575-36327875 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 77, 38 |
| Conread position: | 50-452 |
| Cow position: | chr14:17076413-17076005 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 280 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 69, 174 |
| Conread position: | 55-302 |
| Cow position: | chr14:34354761-34354509 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 15, 23 |
| Conread position: | 58-406 |
| Cow position: | chr14:49873854-49874200 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 21, 59 |
| Conread position: | 58-446 |
| Cow position: | chr14:26818915-26818505 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 272 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 65, 227 |
| Conread position: | 66-294 |
| Cow position: | chr14:43837151-43836927 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 37, 11 |
| Conread position: | 77-451 |
| Cow position: | chr14:48437937-48438311 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 245 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 63, 22 |
| Conread position: | 105-592 |
| Cow position: | chr14:1735367-1735881 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 336 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 28, 9 |
| Conread position: | 115-299 |
| Cow position: | chr14:45275001-45274823 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 168, 23 |
| Conread position: | 129-302 |
| Cow position: | chr14:13664549-13664720 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 86, 32 |
| Conread position: | 129-330 |
| Cow position: | chr14:10392061-10391854 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 93, 137 |
| Conread position: | 129-511 |
| Cow position: | chr14:45962009-45962413 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 269 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 93, 281 |
| Conread position: | 131-293 |
| Cow position: | chr14:48441445-48441609 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 93, 124 |
| Conread position: | 131-563 |
| Cow position: | chr14:30238654-30238214 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 280 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 89, 24 |
| Conread position: | 149-579 |
| Cow position: | chr14:12962642-12963082 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 279 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 67, 93 |
| Conread position: | 153-448 |
| Cow position: | chr14:19054960-19055257 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 67, 134 |
| Conread position: | 173-567 |
| Cow position: | chr14:26286942-26286522 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 285 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 41, 66 |
| Conread position: | 182-462 |
| Cow position: | chr14:46963889-46964183 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 30, 189 |
| Conread position: | 193-456 |
| Cow position: | chr14:23425074-23424798 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 29, 206 |
| Conread position: | 269-579 |
| Cow position: | chr14:40984402-40984725 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 16, 22 |
Show alignments to all cow chromosomes.