Cow genome map

Conread name: Ss1.1-rspc025_m8.5

Conread position: 1-302
Cow position: chr15:40171092-40171410 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 210
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 68, 77

Conread position: 1-303
Cow position: chr15:8937687-8937372 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 202
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 21, 0

Conread position: 1-318
Cow position: chr15:26208522-26208831 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 220
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 22, 50

Conread position: 1-557
Cow position: chr15:30437882-30437326 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 375
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 21, 164

Conread position: 3-302
Cow position: chr15:4139633-4139945 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 202
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 19, 100

Conread position: 3-302
Cow position: chr15:21608042-21607737 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 195
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 19, 0

Conread position: 3-302
Cow position: chr15:32065013-32065326 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 204
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 116, 0

Conread position: 3-303
Cow position: chr15:20347991-20348302 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 215
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 19, 30

Conread position: 3-450
Cow position: chr15:45501878-45502351 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 311
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 19, 75

Conread position: 3-451
Cow position: chr15:9735453-9735923 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 294
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 19, 37

Conread position: 3-452
Cow position: chr15:27726221-27726689 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 300
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 19, 32

Conread position: 3-579
Cow position: chr15:30725967-30726559 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 366
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 18, 337

Conread position: 3-579
Cow position: chr15:45455230-45455819 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 373
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 19, 29

Conread position: 4-255
Cow position: chr15:51943200-51942932 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 190
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 19, 29

Conread position: 4-278
Cow position: chr15:15172852-15172567 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 206
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 14, 28

Conread position: 4-296
Cow position: chr15:4082264-4081970 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 187
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 18, 125

Conread position: 4-299
Cow position: chr15:4821791-4822105 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 205
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 18, 0

Conread position: 4-302
Cow position: chr15:678341-678024 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 207
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 18, 0

Conread position: 4-302
Cow position: chr15:6617078-6616761 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 211
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 18, 0

Conread position: 4-302
Cow position: chr15:23529325-23529623 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 211
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 112, 28

Conread position: 4-303
Cow position: chr15:14719316-14719000 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 214
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 19, 39

Conread position: 4-307
Cow position: chr15:34499588-34499280 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 213
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 76, 35

Conread position: 4-364
Cow position: chr15:26881172-26881540 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 240
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 14, 74

Conread position: 4-448
Cow position: chr15:36298767-36299205 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 284
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 8, 78

Conread position: 4-462
Cow position: chr15:10801925-10801435 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 324
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 105, 169

Conread position: 5-305
Cow position: chr15:42646405-42646712 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 206
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 23, 40

Conread position: 6-299
Cow position: chr15:9076335-9076031 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 209
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 16, 78

Conread position: 7-295
Cow position: chr15:24639304-24639003 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 209
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 102, 98

Conread position: 7-298
Cow position: chr15:30543029-30543318 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 205
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 11, 72

Conread position: 7-305
Cow position: chr15:5242778-5243092 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 212
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 15, 217

Conread position: 7-454
Cow position: chr15:26405514-26405973 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 301
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 16, 30

Conread position: 7-579
Cow position: chr15:13683607-13682998 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 390
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 16, 227

Conread position: 7-579
Cow position: chr15:48288113-48287531 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 37

Conread position: 8-329
Cow position: chr15:35274636-35274303 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 219
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 10, 37

Conread position: 8-407
Cow position: chr15:24097851-24097448 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 261
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 88, 8

Conread position: 8-417
Cow position: chr15:18757554-18757983 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 285
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 60, 76

Conread position: 8-579
Cow position: chr15:19655292-19654710 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 376
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 113, 44

Conread position: 11-212
Cow position: chr15:34102588-34102790 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 140
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 34, 197

Conread position: 14-550
Cow position: chr15:37714351-37713804 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 351
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 82, 113

Conread position: 17-259
Cow position: chr15:22454023-22454254 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 163
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 59, 0

Conread position: 17-294
Cow position: chr15:29329967-29330251 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 196
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 81, 23

Conread position: 17-454
Cow position: chr15:201377-201812 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 284
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 125, 68

Conread position: 17-500
Cow position: chr15:7279242-7278749 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 328
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 205, 68

Conread position: 17-558
Cow position: chr15:34057568-34058124 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 367
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 98, 40

Conread position: 19-393
Cow position: chr15:33795222-33795615 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 255
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 101, 14

Conread position: 24-305
Cow position: chr15:4895138-4895427 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 191
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 97, 115

Conread position: 29-258
Cow position: chr15:8427229-8426996 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 165
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 92, 130

Conread position: 35-565
Cow position: chr15:12770791-12770237 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 376
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 89, 73

Conread position: 38-306
Cow position: chr15:47604543-47604261 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 193
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 5, 48

Conread position: 46-304
Cow position: chr15:16485345-16485080 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 191
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 75, 30

Conread position: 51-305
Cow position: chr15:9390382-9390133 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 173
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 171, 79

Conread position: 59-592
Cow position: chr15:5040624-5040071 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 348
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 70, 166

Conread position: 85-579
Cow position: chr15:45709382-45708852 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 345
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 31, 89

Conread position: 116-560
Cow position: chr15:27759400-27759873 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 323
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 106, 7

Conread position: 117-316
Cow position: chr15:17660626-17660414 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 149
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 123-330
Cow position: chr15:15596740-15596952 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 154
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 32, 7

Conread position: 125-459
Cow position: chr15:29273103-29273445 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 220
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 59, 249

Conread position: 129-460
Cow position: chr15:42633936-42634277 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 226
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 93, 80

Conread position: 130-457
Cow position: chr15:51555621-51555293 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 213
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 38, 85

Conread position: 149-445
Cow position: chr15:40389847-40389532 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 206
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 68, 232

Conread position: 149-593
Cow position: chr15:16925585-16926048 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 297
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 75, 116

Conread position: 155-443
Cow position: chr15:24680418-24680117 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 198
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 69, 210

Conread position: 164-465
Cow position: chr15:22434523-22434218 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 213
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 14, 31

Show alignments to all cow chromosomes.