Cow genome map
| Conread name: | Ss1.1-rspc025_m8.5 |
| Conread position: | 1-439 |
| Cow position: | chr16:29864399-29864849 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 307 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 22, 33 |
| Conread position: | 1-451 |
| Cow position: | chr16:27013329-27012856 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 311 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 22, 43 |
| Conread position: | 3-255 |
| Cow position: | chr16:20595362-20595110 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 15, 29 |
| Conread position: | 3-303 |
| Cow position: | chr16:54296557-54296256 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 107, 13 |
| Conread position: | 3-305 |
| Cow position: | chr16:41834798-41834476 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 22, 76 |
| Conread position: | 3-349 |
| Cow position: | chr16:23892395-23892750 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 20, 75 |
| Conread position: | 3-462 |
| Cow position: | chr16:15187991-15187510 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 303 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 19, 68 |
| Conread position: | 3-464 |
| Cow position: | chr16:52408197-52408656 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 313 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 219, 99 |
| Conread position: | 3-531 |
| Cow position: | chr16:16540330-16539771 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 350 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 19, 141 |
| Conread position: | 3-552 |
| Cow position: | chr16:52892484-52891904 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 363 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 19, 249 |
| Conread position: | 3-557 |
| Cow position: | chr16:18360569-18360016 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 374 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 20, 315 |
| Conread position: | 3-561 |
| Cow position: | chr16:17142332-17141738 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 369 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 19, 383 |
| Conread position: | 3-579 |
| Cow position: | chr16:12535035-12535624 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 363 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 19, 164 |
| Conread position: | 3-579 |
| Cow position: | chr16:25174167-25173559 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 374 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 19, 274 |
| Conread position: | 4-302 |
| Cow position: | chr16:4342986-4343291 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 18, 124 |
| Conread position: | 4-302 |
| Cow position: | chr16:20502963-20502650 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-302 |
| Cow position: | chr16:54518353-54518039 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 18, 272 |
| Conread position: | 4-303 |
| Cow position: | chr16:7340705-7340399 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 18, 112 |
| Conread position: | 4-318 |
| Cow position: | chr16:42733359-42733690 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-330 |
| Cow position: | chr16:52255193-52255529 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 227 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 129, 12 |
| Conread position: | 4-451 |
| Cow position: | chr16:49780018-49780496 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 303 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 367 |
| Conread position: | 4-457 |
| Cow position: | chr16:40284327-40283862 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 289 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 8, 37 |
| Conread position: | 4-567 |
| Cow position: | chr16:6677649-6677048 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 372 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 18, 379 |
| Conread position: | 4-579 |
| Cow position: | chr16:27525093-27525695 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 104 |
| Conread position: | 4-580 |
| Cow position: | chr16:24615143-24615754 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 382 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 18, 357 |
| Conread position: | 5-563 |
| Cow position: | chr16:53678283-53678839 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 378 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 18, 172 |
| Conread position: | 7-302 |
| Cow position: | chr16:45534382-45534077 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 15, 34 |
| Conread position: | 7-303 |
| Cow position: | chr16:53214467-53214164 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 15, 100 |
| Conread position: | 7-367 |
| Cow position: | chr16:33322698-33323066 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 18, 64 |
| Conread position: | 7-394 |
| Cow position: | chr16:29323064-29323450 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 16, 256 |
| Conread position: | 7-444 |
| Cow position: | chr16:31619259-31619702 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 280 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 9, 124 |
| Conread position: | 7-451 |
| Cow position: | chr16:19327536-19327079 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 291 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 99, 43 |
| Conread position: | 8-299 |
| Cow position: | chr16:48631150-48630849 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 8-302 |
| Cow position: | chr16:47367897-47367601 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 14, 65 |
| Conread position: | 8-567 |
| Cow position: | chr16:44704541-44703950 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 384 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 25, 30 |
| Conread position: | 8-577 |
| Cow position: | chr16:41623783-41624361 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 367 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 10, 107 |
| Conread position: | 9-431 |
| Cow position: | chr16:16285939-16285500 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 288 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 14, 70 |
| Conread position: | 13-579 |
| Cow position: | chr16:11310250-11309663 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 375 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 8, 26 |
| Conread position: | 14-292 |
| Cow position: | chr16:44972827-44973122 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 16-451 |
| Cow position: | chr16:28267799-28268261 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 293 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 103, 61 |
| Conread position: | 17-318 |
| Cow position: | chr16:30611887-30612200 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 99, 177 |
| Conread position: | 17-321 |
| Cow position: | chr16:32839479-32839155 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 100, 222 |
| Conread position: | 17-421 |
| Cow position: | chr16:12175147-12175580 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 57, 376 |
| Conread position: | 17-421 |
| Cow position: | chr16:26682562-26682142 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 276 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 58, 62 |
| Conread position: | 17-444 |
| Cow position: | chr16:40383235-40382790 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 288 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 104, 126 |
| Conread position: | 17-578 |
| Cow position: | chr16:23029246-23028640 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 396 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 88, 174 |
| Conread position: | 20-578 |
| Cow position: | chr16:9609826-9610408 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 382 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 112, 8 |
| Conread position: | 21-303 |
| Cow position: | chr16:6153224-6153505 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 10, 25 |
| Conread position: | 35-316 |
| Cow position: | chr16:22386311-22386015 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 35-324 |
| Cow position: | chr16:20667373-20667073 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 86, 161 |
| Conread position: | 42-409 |
| Cow position: | chr16:1704344-1703959 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 77, 164 |
| Conread position: | 42-414 |
| Cow position: | chr16:44569721-44570097 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 257 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 79, 143 |
| Conread position: | 44-330 |
| Cow position: | chr16:28302145-28302446 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 44-453 |
| Cow position: | chr16:8661979-8662408 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 276 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 58, 221 |
| Conread position: | 45-330 |
| Cow position: | chr16:10130468-10130768 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 66, 12 |
| Conread position: | 55-303 |
| Cow position: | chr16:48338570-48338305 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 65, 216 |
| Conread position: | 55-579 |
| Cow position: | chr16:16449271-16448745 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 340 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 67, 22 |
| Conread position: | 55-579 |
| Cow position: | chr16:32776980-32777535 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 358 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 15, 23 |
| Conread position: | 58-346 |
| Cow position: | chr16:14460128-14459835 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 64, 36 |
| Conread position: | 59-295 |
| Cow position: | chr16:14745667-14745916 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 62, 216 |
| Conread position: | 85-572 |
| Cow position: | chr16:12887878-12887370 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 330 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 42, 274 |
| Conread position: | 99-451 |
| Cow position: | chr16:28372964-28373328 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 96, 126 |
| Conread position: | 117-580 |
| Cow position: | chr16:24925851-24925365 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 308 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 104, 158 |
| Conread position: | 124-578 |
| Cow position: | chr16:259054-259515 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 301 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 100, 129 |
| Conread position: | 129-457 |
| Cow position: | chr16:19725567-19725231 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 221 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 154, 230 |
| Conread position: | 129-579 |
| Cow position: | chr16:34247113-34247570 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 301 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 93, 142 |
| Conread position: | 130-448 |
| Cow position: | chr16:52473173-52473496 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 153, 55 |
| Conread position: | 131-470 |
| Cow position: | chr16:29738275-29738627 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 241 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 92, 132 |
| Conread position: | 132-580 |
| Cow position: | chr16:14067722-14068176 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 286 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 90, 240 |
| Conread position: | 149-592 |
| Cow position: | chr16:54651586-54652028 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 304 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 75, 63 |
| Conread position: | 155-394 |
| Cow position: | chr16:21317134-21316882 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 63, 27 |
| Conread position: | 169-517 |
| Cow position: | chr16:54086667-54086307 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 79, 52 |
| Conread position: | 189-453 |
| Cow position: | chr16:43723072-43723335 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 36, 64 |
Show alignments to all cow chromosomes.