Cow genome map
| Conread name: | Ss1.1-rspc025_m8.5 |
| Conread position: | 1-255 |
| Cow position: | chr17:18315485-18315217 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 1-281 |
| Cow position: | chr17:7802364-7802649 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 18, 229 |
| Conread position: | 1-296 |
| Cow position: | chr17:20084326-20084629 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-450 |
| Cow position: | chr17:36817361-36816902 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 294 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 21, 79 |
| Conread position: | 3-302 |
| Cow position: | chr17:11775905-11775590 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 19, 79 |
| Conread position: | 3-312 |
| Cow position: | chr17:9229775-9230090 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 23, 48 |
| Conread position: | 3-387 |
| Cow position: | chr17:6628625-6628243 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 264 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 165, 13 |
| Conread position: | 3-514 |
| Cow position: | chr17:8067774-8068289 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 324 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 19, 53 |
| Conread position: | 3-567 |
| Cow position: | chr17:33713106-33712511 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 378 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 20, 92 |
| Conread position: | 3-579 |
| Cow position: | chr17:2839505-2838907 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 377 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 13, 79 |
| Conread position: | 4-281 |
| Cow position: | chr17:9902870-9902585 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 14, 186 |
| Conread position: | 4-295 |
| Cow position: | chr17:8008073-8007771 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 20, 44 |
| Conread position: | 4-299 |
| Cow position: | chr17:21860325-21860634 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 18, 76 |
| Conread position: | 4-302 |
| Cow position: | chr17:5638400-5638713 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 173 |
| Conread position: | 4-302 |
| Cow position: | chr17:5672028-5672341 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 173 |
| Conread position: | 4-302 |
| Cow position: | chr17:20226093-20225777 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-302 |
| Cow position: | chr17:20391266-20390949 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-302 |
| Cow position: | chr17:20546629-20546312 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-302 |
| Cow position: | chr17:25834909-25834592 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-302 |
| Cow position: | chr17:31986709-31987025 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 194 |
| Conread position: | 4-417 |
| Cow position: | chr17:13202381-13201978 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 265 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 19, 78 |
| Conread position: | 4-514 |
| Cow position: | chr17:12631388-12631884 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 334 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 52, 12 |
| Conread position: | 4-577 |
| Cow position: | chr17:21216806-21217405 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 389 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 18, 74 |
| Conread position: | 5-330 |
| Cow position: | chr17:21184835-21185155 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 17, 78 |
| Conread position: | 7-302 |
| Cow position: | chr17:2177459-2177155 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 15, 137 |
| Conread position: | 7-330 |
| Cow position: | chr17:29823037-29822694 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 234 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 16, 26 |
| Conread position: | 8-278 |
| Cow position: | chr17:40416153-40416438 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 8-303 |
| Cow position: | chr17:692139-692448 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 14, 26 |
| Conread position: | 8-303 |
| Cow position: | chr17:42663092-42663392 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 15, 21 |
| Conread position: | 9-234 |
| Cow position: | chr17:11795000-11795229 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 12, 54 |
| Conread position: | 9-437 |
| Cow position: | chr17:41898528-41898973 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 296 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 16, 55 |
| Conread position: | 9-579 |
| Cow position: | chr17:16117990-16118579 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 372 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 112, 25 |
| Conread position: | 11-332 |
| Cow position: | chr17:35547845-35548179 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 11, 318 |
| Conread position: | 13-255 |
| Cow position: | chr17:39748123-39747870 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 7, 86 |
| Conread position: | 13-303 |
| Cow position: | chr17:28235496-28235217 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 10, 92 |
| Conread position: | 13-303 |
| Cow position: | chr17:29355575-29355877 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 9, 224 |
| Conread position: | 17-302 |
| Cow position: | chr17:23337582-23337873 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 92, 212 |
| Conread position: | 17-303 |
| Cow position: | chr17:45792-46091 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 77, 226 |
| Conread position: | 17-453 |
| Cow position: | chr17:35018812-35018358 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 296 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 72, 88 |
| Conread position: | 17-462 |
| Cow position: | chr17:16904057-16903587 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 300 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 104, 367 |
| Conread position: | 17-517 |
| Cow position: | chr17:28183556-28184056 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 322 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 206, 60 |
| Conread position: | 17-579 |
| Cow position: | chr17:22238023-22237431 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 381 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 98, 194 |
| Conread position: | 26-260 |
| Cow position: | chr17:7335120-7334883 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 101, 145 |
| Conread position: | 31-565 |
| Cow position: | chr17:18893122-18892560 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 361 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 90, 9 |
| Conread position: | 38-303 |
| Cow position: | chr17:44379945-44380209 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 36, 64 |
| Conread position: | 42-299 |
| Cow position: | chr17:4351059-4351306 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 185, 60 |
| Conread position: | 44-294 |
| Cow position: | chr17:32641322-32641073 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 78, 32 |
| Conread position: | 45-306 |
| Cow position: | chr17:37701398-37701121 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 76, 262 |
| Conread position: | 46-565 |
| Cow position: | chr17:41243564-41243015 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 363 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 67, 188 |
| Conread position: | 69-275 |
| Cow position: | chr17:4615302-4615085 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 78-416 |
| Cow position: | chr17:12975644-12975984 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 22, 52 |
| Conread position: | 83-405 |
| Cow position: | chr17:13180926-13180583 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 39, 293 |
| Conread position: | 94-463 |
| Cow position: | chr17:6594700-6594329 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 188, 36 |
| Conread position: | 116-421 |
| Cow position: | chr17:43498407-43498721 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 25, 126 |
| Conread position: | 117-278 |
| Cow position: | chr17:876586-876754 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 117-294 |
| Cow position: | chr17:23041944-23041763 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 120-578 |
| Cow position: | chr17:9753145-9752664 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 299 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 97, 248 |
| Conread position: | 122-294 |
| Cow position: | chr17:1219593-1219769 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 100, 130 |
| Conread position: | 129-586 |
| Cow position: | chr17:38942951-38942474 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 302 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 81, 107 |
| Conread position: | 130-451 |
| Cow position: | chr17:43443139-43443475 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 92, 241 |
| Conread position: | 131-440 |
| Cow position: | chr17:31049951-31050277 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 33, 243 |
| Conread position: | 132-448 |
| Cow position: | chr17:23056596-23056277 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 211 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 88, 162 |
| Conread position: | 148-462 |
| Cow position: | chr17:8859311-8859630 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 74, 95 |
| Conread position: | 153-330 |
| Cow position: | chr17:6099884-6099704 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 129, 68 |
| Conread position: | 154-561 |
| Cow position: | chr17:41813765-41813331 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 289 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 61, 109 |
| Conread position: | 163-509 |
| Cow position: | chr17:40054558-40054201 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 120, 13 |
| Conread position: | 167-557 |
| Cow position: | chr17:45403326-45403725 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 245 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 60, 103 |
| Conread position: | 168-579 |
| Cow position: | chr17:5390927-5391354 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 290 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 108, 79 |
Show alignments to all cow chromosomes.