Cow genome map
| Conread name: | Ss1.1-rspc025_m8.5 |
| Conread position: | 1-277 |
| Cow position: | chr18:41498576-41498292 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 21, 169 |
| Conread position: | 1-294 |
| Cow position: | chr18:16152173-16151889 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 21, 116 |
| Conread position: | 1-302 |
| Cow position: | chr18:18247825-18247519 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 21, 138 |
| Conread position: | 1-318 |
| Cow position: | chr18:17454304-17454636 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 20, 253 |
| Conread position: | 1-492 |
| Cow position: | chr18:43148969-43149458 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 316 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 28, 53 |
| Conread position: | 3-282 |
| Cow position: | chr18:54059135-54059419 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 19, 76 |
| Conread position: | 3-285 |
| Cow position: | chr18:32121967-32122267 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 3-295 |
| Cow position: | chr18:45979081-45978780 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 19, 79 |
| Conread position: | 3-442 |
| Cow position: | chr18:37874064-37874524 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 298 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 118, 18 |
| Conread position: | 3-448 |
| Cow position: | chr18:51309613-51309144 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 318 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 18, 30 |
| Conread position: | 3-579 |
| Cow position: | chr18:6733254-6733865 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 386 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 19, 255 |
| Conread position: | 3-579 |
| Cow position: | chr18:14419693-14419075 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 386 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 19, 363 |
| Conread position: | 3-579 |
| Cow position: | chr18:36512343-36511731 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 385 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 19, 213 |
| Conread position: | 3-580 |
| Cow position: | chr18:29862892-29863508 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 384 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 19, 363 |
| Conread position: | 4-203 |
| Cow position: | chr18:35085126-35085335 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 4-257 |
| Cow position: | chr18:3567161-3566904 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 18, 60 |
| Conread position: | 4-277 |
| Cow position: | chr18:41156923-41156631 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 18, 232 |
| Conread position: | 4-302 |
| Cow position: | chr18:29079452-29079135 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-302 |
| Cow position: | chr18:32210100-32210414 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-302 |
| Cow position: | chr18:43473301-43472996 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 78 |
| Conread position: | 4-303 |
| Cow position: | chr18:48300754-48301070 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 18, 42 |
| Conread position: | 4-394 |
| Cow position: | chr18:44050714-44050319 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 271 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 18, 124 |
| Conread position: | 4-451 |
| Cow position: | chr18:16857500-16857025 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 304 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 18, 367 |
| Conread position: | 6-294 |
| Cow position: | chr18:11732109-11731823 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 19, 74 |
| Conread position: | 7-288 |
| Cow position: | chr18:26845781-26845491 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 15, 37 |
| Conread position: | 7-293 |
| Cow position: | chr18:23880080-23879776 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 27, 270 |
| Conread position: | 7-294 |
| Cow position: | chr18:35883713-35884008 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 16, 52 |
| Conread position: | 7-302 |
| Cow position: | chr18:53872587-53872290 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 15, 36 |
| Conread position: | 7-303 |
| Cow position: | chr18:6103707-6104008 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 14, 65 |
| Conread position: | 7-303 |
| Cow position: | chr18:39659329-39659632 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 15, 59 |
| Conread position: | 7-392 |
| Cow position: | chr18:183491-183081 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 12, 73 |
| Conread position: | 7-444 |
| Cow position: | chr18:19401506-19401944 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 279 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 11, 133 |
| Conread position: | 7-462 |
| Cow position: | chr18:16094592-16094110 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 299 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 15, 25 |
| Conread position: | 7-507 |
| Cow position: | chr18:51251377-51250840 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 346 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 114, 9 |
| Conread position: | 8-302 |
| Cow position: | chr18:50092734-50093046 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 9-220 |
| Cow position: | chr18:38018953-38019175 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 50, 7 |
| Conread position: | 9-242 |
| Cow position: | chr18:14869660-14869419 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 13, 25 |
| Conread position: | 10-274 |
| Cow position: | chr18:1729713-1729986 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 108, 165 |
| Conread position: | 10-303 |
| Cow position: | chr18:41958228-41957919 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 10, 99 |
| Conread position: | 10-556 |
| Cow position: | chr18:14816922-14816334 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 388 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 12, 31 |
| Conread position: | 11-580 |
| Cow position: | chr18:30846360-30846952 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 382 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 110, 180 |
| Conread position: | 17-299 |
| Cow position: | chr18:37678397-37678107 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 90, 182 |
| Conread position: | 17-303 |
| Cow position: | chr18:35057712-35057422 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 130, 64 |
| Conread position: | 17-323 |
| Cow position: | chr18:34984096-34983785 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 112, 165 |
| Conread position: | 17-451 |
| Cow position: | chr18:36649090-36648642 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 285 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 102, 180 |
| Conread position: | 17-579 |
| Cow position: | chr18:25200459-25199866 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 384 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 104, 540 |
| Conread position: | 39-328 |
| Cow position: | chr18:19271172-19270874 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 77, 185 |
| Conread position: | 40-303 |
| Cow position: | chr18:32117388-32117113 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 51, 23 |
| Conread position: | 42-303 |
| Cow position: | chr18:7387930-7388204 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 42-303 |
| Cow position: | chr18:35585961-35586215 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 108, 19 |
| Conread position: | 42-456 |
| Cow position: | chr18:46478744-46479170 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 74, 221 |
| Conread position: | 43-332 |
| Cow position: | chr18:21236748-21237060 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 215 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 38, 43 |
| Conread position: | 44-462 |
| Cow position: | chr18:16471539-16471953 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 264 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 26, 33 |
| Conread position: | 58-218 |
| Cow position: | chr18:50117970-50118134 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 62-329 |
| Cow position: | chr18:44541368-44541649 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 59, 179 |
| Conread position: | 99-307 |
| Cow position: | chr18:19299700-19299491 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 52, 5 |
| Conread position: | 115-461 |
| Cow position: | chr18:14423847-14423492 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 239 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 168, 20 |
| Conread position: | 119-579 |
| Cow position: | chr18:44404418-44403937 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 299 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 98, 256 |
| Conread position: | 123-452 |
| Cow position: | chr18:36606154-36605819 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 11, 117 |
| Conread position: | 125-563 |
| Cow position: | chr18:51234504-51234950 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 293 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 63, 130 |
| Conread position: | 125-573 |
| Cow position: | chr18:6091318-6091761 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 304 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 16, 180 |
| Conread position: | 128-464 |
| Cow position: | chr18:5682265-5681922 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 96, 33 |
| Conread position: | 129-470 |
| Cow position: | chr18:20287316-20287655 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 93, 80 |
| Conread position: | 129-517 |
| Cow position: | chr18:14406643-14407051 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 59, 97 |
| Conread position: | 130-303 |
| Cow position: | chr18:6377111-6376936 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 130-509 |
| Cow position: | chr18:252553-252159 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 250 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 88, 244 |
| Conread position: | 131-330 |
| Cow position: | chr18:23463415-23463617 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 86, 27 |
| Conread position: | 148-550 |
| Cow position: | chr18:41358863-41358459 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 268 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 66, 5 |
| Conread position: | 157-431 |
| Cow position: | chr18:39484175-39484460 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 65, 87 |
| Conread position: | 169-563 |
| Cow position: | chr18:41260678-41260271 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 269 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 53, 170 |
| Conread position: | 182-446 |
| Cow position: | chr18:18447526-18447792 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 30, 87 |
Show alignments to all cow chromosomes.