Cow genome map
| Conread name: | Ss1.1-rspc025_m8.5 |
| Conread position: | 1-562 |
| Cow position: | chr19:7480240-7480814 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 359 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 21, 111 |
| Conread position: | 1-580 |
| Cow position: | chr19:5429087-5429699 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 390 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 21, 159 |
| Conread position: | 3-296 |
| Cow position: | chr19:15797142-15796834 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 3-296 |
| Cow position: | chr19:50833185-50833493 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 3-302 |
| Cow position: | chr19:4447934-4447619 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 3-402 |
| Cow position: | chr19:22466655-22467065 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 264 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 41, 28 |
| Conread position: | 3-579 |
| Cow position: | chr19:33350815-33351400 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 37 |
| Conread position: | 4-261 |
| Cow position: | chr19:26976605-26976868 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 18, 60 |
| Conread position: | 4-297 |
| Cow position: | chr19:46297695-46297394 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 18, 132 |
| Conread position: | 4-302 |
| Cow position: | chr19:29367249-29366932 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-302 |
| Cow position: | chr19:29394063-29393746 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-302 |
| Cow position: | chr19:29624757-29624440 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-302 |
| Cow position: | chr19:30722413-30722717 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 19, 40 |
| Conread position: | 4-302 |
| Cow position: | chr19:35835315-35835011 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 4-302 |
| Cow position: | chr19:48626776-48626463 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-329 |
| Cow position: | chr19:49401694-49401360 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 242 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 117, 189 |
| Conread position: | 4-330 |
| Cow position: | chr19:50668799-50668452 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 117, 94 |
| Conread position: | 4-442 |
| Cow position: | chr19:6614796-6614331 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 296 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 23, 379 |
| Conread position: | 4-451 |
| Cow position: | chr19:10196129-10195656 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 302 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 18, 100 |
| Conread position: | 4-453 |
| Cow position: | chr19:44035352-44034886 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 296 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 18, 269 |
| Conread position: | 4-457 |
| Cow position: | chr19:42871085-42870607 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 317 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 18, 280 |
| Conread position: | 4-565 |
| Cow position: | chr19:6358062-6358635 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 368 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 14, 34 |
| Conread position: | 7-235 |
| Cow position: | chr19:13853119-13852880 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 15, 93 |
| Conread position: | 7-284 |
| Cow position: | chr19:25311937-25312223 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 15, 63 |
| Conread position: | 7-332 |
| Cow position: | chr19:30565264-30564927 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 105, 281 |
| Conread position: | 7-394 |
| Cow position: | chr19:4327468-4327842 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 260 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 15, 69 |
| Conread position: | 8-258 |
| Cow position: | chr19:34392258-34392521 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 113, 45 |
| Conread position: | 8-281 |
| Cow position: | chr19:33625285-33624998 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 14, 144 |
| Conread position: | 8-294 |
| Cow position: | chr19:41166882-41166580 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 14, 32 |
| Conread position: | 8-301 |
| Cow position: | chr19:146504-146208 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 115, 55 |
| Conread position: | 11-302 |
| Cow position: | chr19:20671890-20672191 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 88, 81 |
| Conread position: | 11-348 |
| Cow position: | chr19:18448664-18448312 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 8, 97 |
| Conread position: | 14-303 |
| Cow position: | chr19:41851781-41852077 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 42, 64 |
| Conread position: | 14-330 |
| Cow position: | chr19:41213829-41214164 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 231 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 14-465 |
| Cow position: | chr19:15060373-15060822 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 294 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 14, 31 |
| Conread position: | 21-302 |
| Cow position: | chr19:39697177-39696888 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 101, 60 |
| Conread position: | 22-232 |
| Cow position: | chr19:39633999-39634208 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 114, 12 |
| Conread position: | 37-509 |
| Cow position: | chr19:41786124-41786615 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 325 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 74, 19 |
| Conread position: | 43-299 |
| Cow position: | chr19:7608048-7608311 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 22, 127 |
| Conread position: | 43-453 |
| Cow position: | chr19:35171223-35171650 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 287 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 77, 39 |
| Conread position: | 44-321 |
| Cow position: | chr19:39943235-39943516 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 26, 35 |
| Conread position: | 50-303 |
| Cow position: | chr19:15137937-15138217 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 56-330 |
| Cow position: | chr19:31279905-31279620 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 65, 213 |
| Conread position: | 90-454 |
| Cow position: | chr19:43511221-43510850 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 105, 26 |
| Conread position: | 92-294 |
| Cow position: | chr19:35432030-35432237 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 116-462 |
| Cow position: | chr19:28804770-28804406 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 91, 9 |
| Conread position: | 117-561 |
| Cow position: | chr19:45335168-45334712 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 296 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 106, 43 |
| Conread position: | 129-312 |
| Cow position: | chr19:30456154-30455970 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 86, 174 |
| Conread position: | 129-455 |
| Cow position: | chr19:46447403-46447073 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 80, 98 |
| Conread position: | 130-303 |
| Cow position: | chr19:20672460-20672636 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 130-453 |
| Cow position: | chr19:21211188-21211518 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 92, 208 |
| Conread position: | 130-556 |
| Cow position: | chr19:43962962-43963405 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 93, 36 |
| Conread position: | 130-579 |
| Cow position: | chr19:37653741-37653280 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 296 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 92, 128 |
| Conread position: | 131-454 |
| Cow position: | chr19:23116001-23115668 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 88, 102 |
| Conread position: | 135-549 |
| Cow position: | chr19:25604835-25605269 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 274 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 87, 29 |
| Conread position: | 152-453 |
| Cow position: | chr19:2701019-2701336 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 72, 49 |
| Conread position: | 166-565 |
| Cow position: | chr19:23822198-23822586 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 259 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 56, 88 |
| Conread position: | 171-324 |
| Cow position: | chr19:22502165-22502326 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 171-449 |
| Cow position: | chr19:6628930-6629218 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 55, 196 |
| Conread position: | 172-557 |
| Cow position: | chr19:5632974-5633371 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 266 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 50, 26 |
| Conread position: | 290-560 |
| Cow position: | chr19:32371059-32371345 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 8, 22 |
| Conread position: | 382-592 |
| Cow position: | chr19:36708072-36708288 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 51, 119 |
Show alignments to all cow chromosomes.