Cow genome map
| Conread name: | Ss1.1-rspc025_m8.5 |
| Conread position: | 1-302 |
| Cow position: | chr20:16516010-16515690 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-305 |
| Cow position: | chr20:28295003-28294685 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 21, 262 |
| Conread position: | 1-437 |
| Cow position: | chr20:10035064-10035518 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 288 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 11, 78 |
| Conread position: | 1-442 |
| Cow position: | chr20:24508657-24508188 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 303 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 120, 96 |
| Conread position: | 1-545 |
| Cow position: | chr20:15240359-15240921 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 348 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 21, 233 |
| Conread position: | 3-119 |
| Cow position: | chr20:31220956-31220839 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 3-276 |
| Cow position: | chr20:36374514-36374808 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 3-282 |
| Cow position: | chr20:15746642-15746350 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 3-292 |
| Cow position: | chr20:19146313-19146009 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 19, 77 |
| Conread position: | 3-302 |
| Cow position: | chr20:8834055-8834356 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 16, 220 |
| Conread position: | 3-302 |
| Cow position: | chr20:12826794-12827110 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 3-443 |
| Cow position: | chr20:28165520-28165062 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 289 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 15, 378 |
| Conread position: | 3-443 |
| Cow position: | chr20:33731430-33730972 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 291 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 19, 359 |
| Conread position: | 3-448 |
| Cow position: | chr20:9066210-9065748 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 299 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 12, 66 |
| Conread position: | 4-302 |
| Cow position: | chr20:2178682-2178999 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 19, 269 |
| Conread position: | 4-302 |
| Cow position: | chr20:8446096-8445779 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-302 |
| Cow position: | chr20:10099807-10099490 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-302 |
| Cow position: | chr20:18321886-18322190 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 16, 242 |
| Conread position: | 4-302 |
| Cow position: | chr20:28324162-28323845 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-318 |
| Cow position: | chr20:25122553-25122888 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 221 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 18, 281 |
| Conread position: | 4-442 |
| Cow position: | chr20:6831391-6831846 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 297 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 60, 73 |
| Conread position: | 7-210 |
| Cow position: | chr20:23067219-23067432 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 7-302 |
| Cow position: | chr20:10686403-10686096 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 14, 72 |
| Conread position: | 7-302 |
| Cow position: | chr20:19155488-19155796 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 112, 9 |
| Conread position: | 7-439 |
| Cow position: | chr20:2623899-2623458 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 287 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 19, 44 |
| Conread position: | 7-453 |
| Cow position: | chr20:42931520-42931056 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 304 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 15, 39 |
| Conread position: | 7-563 |
| Cow position: | chr20:16974652-16975231 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 382 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 16, 57 |
| Conread position: | 7-579 |
| Cow position: | chr20:23838764-23839357 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 384 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 15, 37 |
| Conread position: | 8-302 |
| Cow position: | chr20:22185342-22185647 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 14, 38 |
| Conread position: | 13-338 |
| Cow position: | chr20:9256785-9257099 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 127, 64 |
| Conread position: | 14-500 |
| Cow position: | chr20:8653822-8653307 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 295 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 106, 67 |
| Conread position: | 15-220 |
| Cow position: | chr20:14619356-14619566 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 17-466 |
| Cow position: | chr20:20630120-20630565 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 288 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 53, 15 |
| Conread position: | 42-317 |
| Cow position: | chr20:13821006-13821297 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 52, 40 |
| Conread position: | 61-303 |
| Cow position: | chr20:10188003-10187755 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 67, 206 |
| Conread position: | 63-303 |
| Cow position: | chr20:7551748-7552000 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 15, 30 |
| Conread position: | 114-317 |
| Cow position: | chr20:6599188-6599394 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 39, 53 |
| Conread position: | 129-452 |
| Cow position: | chr20:9689623-9689288 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 154, 95 |
| Conread position: | 129-540 |
| Cow position: | chr20:24494524-24494099 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 93, 35 |
| Conread position: | 130-291 |
| Cow position: | chr20:13644281-13644442 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 92, 23 |
| Conread position: | 130-453 |
| Cow position: | chr20:22446190-22446523 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 153, 48 |
| Conread position: | 131-580 |
| Cow position: | chr20:2890050-2890520 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 303 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 41, 234 |
| Conread position: | 132-464 |
| Cow position: | chr20:40565312-40564975 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 93, 224 |
| Conread position: | 135-414 |
| Cow position: | chr20:9035149-9035427 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 87, 47 |
| Conread position: | 153-456 |
| Cow position: | chr20:42563699-42563388 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 67, 74 |
| Conread position: | 153-552 |
| Cow position: | chr20:651293-651690 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 281 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 75, 13 |
| Conread position: | 155-428 |
| Cow position: | chr20:13384692-13384418 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 128, 72 |
| Conread position: | 169-563 |
| Cow position: | chr20:14850004-14850410 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 271 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 114, 52 |
Show alignments to all cow chromosomes.