Cow genome map
| Conread name: | Ss1.1-rspc025_m8.5 |
| Conread position: | 1-292 |
| Cow position: | chr21:34591697-34592000 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 1-299 |
| Cow position: | chr21:4079811-4079502 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 21, 139 |
| Conread position: | 1-330 |
| Cow position: | chr21:2289839-2289501 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 116, 15 |
| Conread position: | 1-408 |
| Cow position: | chr21:431692-432115 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 279 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 24, 75 |
| Conread position: | 1-580 |
| Cow position: | chr21:48291561-48292176 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 389 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 21, 7 |
| Conread position: | 3-255 |
| Cow position: | chr21:46241731-46241996 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 3-291 |
| Cow position: | chr21:44092710-44093003 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 32, 40 |
| Conread position: | 3-299 |
| Cow position: | chr21:3765973-3766290 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 19, 48 |
| Conread position: | 3-302 |
| Cow position: | chr21:16890049-16890363 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 3-302 |
| Cow position: | chr21:17207958-17207655 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 3-394 |
| Cow position: | chr21:19127511-19127092 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 282 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 19, 200 |
| Conread position: | 3-579 |
| Cow position: | chr21:10571065-10570463 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 373 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 19, 109 |
| Conread position: | 4-220 |
| Cow position: | chr21:12810106-12810331 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-242 |
| Cow position: | chr21:29015676-29015927 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 9, 241 |
| Conread position: | 4-259 |
| Cow position: | chr21:30159275-30159543 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 40 |
| Conread position: | 4-285 |
| Cow position: | chr21:17032122-17031846 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 147, 77 |
| Conread position: | 4-299 |
| Cow position: | chr21:1765743-1766046 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 173 |
| Conread position: | 4-302 |
| Cow position: | chr21:3496712-3497029 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-302 |
| Cow position: | chr21:7597477-7597794 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-302 |
| Cow position: | chr21:18574308-18574000 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 18, 157 |
| Conread position: | 4-302 |
| Cow position: | chr21:48273404-48273720 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-303 |
| Cow position: | chr21:9209101-9208785 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-305 |
| Cow position: | chr21:4719026-4719346 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-305 |
| Cow position: | chr21:30850656-30850336 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-428 |
| Cow position: | chr21:29976122-29976546 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 290 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 75, 21 |
| Conread position: | 4-448 |
| Cow position: | chr21:45297151-45297619 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 307 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 8, 188 |
| Conread position: | 4-450 |
| Cow position: | chr21:40618160-40618626 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 295 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 40 |
| Conread position: | 4-451 |
| Cow position: | chr21:23341445-23340967 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 306 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 18, 367 |
| Conread position: | 4-465 |
| Cow position: | chr21:45457189-45456715 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 307 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 19, 270 |
| Conread position: | 4-508 |
| Cow position: | chr21:4732750-4733273 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 319 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 279 |
| Conread position: | 4-512 |
| Cow position: | chr21:15444258-15444787 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 337 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 111, 12 |
| Conread position: | 4-577 |
| Cow position: | chr21:39469971-39470587 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 377 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 60 |
| Conread position: | 4-579 |
| Cow position: | chr21:36534420-36535032 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 390 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 19, 33 |
| Conread position: | 5-527 |
| Cow position: | chr21:25291465-25290911 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 351 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 15, 197 |
| Conread position: | 7-239 |
| Cow position: | chr21:41619872-41619630 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 7-277 |
| Cow position: | chr21:20231126-20231401 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 15, 173 |
| Conread position: | 7-292 |
| Cow position: | chr21:4178519-4178792 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 17, 96 |
| Conread position: | 7-302 |
| Cow position: | chr21:5593531-5593844 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 16, 37 |
| Conread position: | 7-302 |
| Cow position: | chr21:9896135-9895834 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 15, 78 |
| Conread position: | 7-302 |
| Cow position: | chr21:21411813-21412112 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 15, 75 |
| Conread position: | 7-303 |
| Cow position: | chr21:42858457-42858765 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 5, 52 |
| Conread position: | 7-453 |
| Cow position: | chr21:4861694-4862150 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 294 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 109, 265 |
| Conread position: | 7-567 |
| Cow position: | chr21:4035501-4036073 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 365 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 13, 191 |
| Conread position: | 7-579 |
| Cow position: | chr21:5020929-5020322 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 381 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 15, 193 |
| Conread position: | 7-586 |
| Cow position: | chr21:21478257-21478854 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 388 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 5, 30 |
| Conread position: | 8-281 |
| Cow position: | chr21:23943040-23943315 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 15, 74 |
| Conread position: | 8-303 |
| Cow position: | chr21:9329269-9329582 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 206 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 14, 70 |
| Conread position: | 8-369 |
| Cow position: | chr21:1631736-1631368 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 257 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 15, 33 |
| Conread position: | 8-449 |
| Cow position: | chr21:34779989-34779540 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 297 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 17, 71 |
| Conread position: | 10-575 |
| Cow position: | chr21:11154523-11155094 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 365 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 14, 28 |
| Conread position: | 11-460 |
| Cow position: | chr21:23801656-23802124 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 291 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 85, 311 |
| Conread position: | 13-295 |
| Cow position: | chr21:9851784-9851482 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 14-367 |
| Cow position: | chr21:37613437-37613069 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 107, 23 |
| Conread position: | 17-302 |
| Cow position: | chr21:31499779-31499480 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 15, 24 |
| Conread position: | 17-303 |
| Cow position: | chr21:42454850-42454565 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 106, 38 |
| Conread position: | 17-408 |
| Cow position: | chr21:3101638-3102035 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 56, 62 |
| Conread position: | 17-579 |
| Cow position: | chr21:27342632-27343223 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 367 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 109, 494 |
| Conread position: | 18-562 |
| Cow position: | chr21:39094493-39093937 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 372 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 159, 18 |
| Conread position: | 21-302 |
| Cow position: | chr21:37343889-37344173 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 14, 22 |
| Conread position: | 35-259 |
| Cow position: | chr21:29652535-29652298 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 81, 15 |
| Conread position: | 42-375 |
| Cow position: | chr21:2460589-2460233 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 69, 55 |
| Conread position: | 44-388 |
| Cow position: | chr21:26105181-26105529 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 238 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 54, 37 |
| Conread position: | 44-579 |
| Cow position: | chr21:26506120-26505572 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 358 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 178, 81 |
| Conread position: | 45-579 |
| Cow position: | chr21:30649432-30649995 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 374 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 71, 333 |
| Conread position: | 52-569 |
| Cow position: | chr21:2906506-2907054 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 357 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 15, 116 |
| Conread position: | 55-587 |
| Cow position: | chr21:26479787-26480355 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 363 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 66, 214 |
| Conread position: | 64-439 |
| Cow position: | chr21:37033115-37033500 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 246 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 46, 144 |
| Conread position: | 81-304 |
| Cow position: | chr21:15933079-15932857 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 61, 140 |
| Conread position: | 83-418 |
| Cow position: | chr21:45868438-45868788 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 40, 174 |
| Conread position: | 116-454 |
| Cow position: | chr21:21020985-21020639 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 236 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 8, 155 |
| Conread position: | 116-517 |
| Cow position: | chr21:46968061-46968458 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 251 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 111, 97 |
| Conread position: | 125-508 |
| Cow position: | chr21:45971664-45972055 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 43, 25 |
| Conread position: | 125-579 |
| Cow position: | chr21:4407527-4407061 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 292 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 39, 146 |
| Conread position: | 129-318 |
| Cow position: | chr21:32190543-32190351 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 87, 48 |
| Conread position: | 130-303 |
| Cow position: | chr21:15520211-15520386 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 92, 19 |
| Conread position: | 132-307 |
| Cow position: | chr21:34549664-34549842 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 90, 170 |
| Conread position: | 135-450 |
| Cow position: | chr21:40647486-40647158 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 91, 236 |
| Conread position: | 149-552 |
| Cow position: | chr21:14923621-14924038 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 73, 202 |
| Conread position: | 149-575 |
| Cow position: | chr21:3108729-3109164 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 274 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 19, 119 |
| Conread position: | 175-564 |
| Cow position: | chr21:15925738-15925342 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 47, 156 |
| Conread position: | 176-555 |
| Cow position: | chr21:1263477-1263073 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 46, 186 |
Show alignments to all cow chromosomes.