Cow genome map
| Conread name: | Ss1.1-rspc025_m8.5 |
| Conread position: | 1-294 |
| Cow position: | chr24:25100767-25101075 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 219 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 21, 185 |
| Conread position: | 2-344 |
| Cow position: | chr24:31050661-31050309 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 21, 74 |
| Conread position: | 3-284 |
| Cow position: | chr24:17544253-17544535 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 19, 73 |
| Conread position: | 3-299 |
| Cow position: | chr24:17752544-17752853 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 116, 13 |
| Conread position: | 3-302 |
| Cow position: | chr24:32823427-32823732 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 16, 39 |
| Conread position: | 3-306 |
| Cow position: | chr24:38588489-38588168 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 17, 73 |
| Conread position: | 3-310 |
| Cow position: | chr24:25424387-25424073 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 21, 226 |
| Conread position: | 3-450 |
| Cow position: | chr24:14914155-14914601 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 276 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 15, 113 |
| Conread position: | 3-462 |
| Cow position: | chr24:10243854-10244330 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 299 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 19, 251 |
| Conread position: | 3-513 |
| Cow position: | chr24:36562593-36563117 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 349 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 16, 30 |
| Conread position: | 3-592 |
| Cow position: | chr24:25264578-25263981 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 402 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 19, 196 |
| Conread position: | 4-212 |
| Cow position: | chr24:16996286-16996065 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-277 |
| Cow position: | chr24:31357292-31357006 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-284 |
| Cow position: | chr24:29071712-29071994 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 18, 42 |
| Conread position: | 4-284 |
| Cow position: | chr24:43777716-43777431 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 19, 89 |
| Conread position: | 4-302 |
| Cow position: | chr24:18740662-18740979 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-302 |
| Cow position: | chr24:27345189-27345506 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-302 |
| Cow position: | chr24:38296763-38296446 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-309 |
| Cow position: | chr24:17683588-17683905 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 19, 45 |
| Conread position: | 4-562 |
| Cow position: | chr24:14353052-14352458 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 370 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 60 |
| Conread position: | 7-303 |
| Cow position: | chr24:14946028-14945736 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 13, 183 |
| Conread position: | 7-314 |
| Cow position: | chr24:19040453-19040772 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 15, 65 |
| Conread position: | 7-330 |
| Cow position: | chr24:23491822-23491477 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 11, 189 |
| Conread position: | 7-452 |
| Cow position: | chr24:35067091-35067548 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 282 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 16, 365 |
| Conread position: | 7-562 |
| Cow position: | chr24:36779964-36779377 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 369 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 15, 153 |
| Conread position: | 7-563 |
| Cow position: | chr24:15296819-15296220 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 375 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 15, 383 |
| Conread position: | 7-565 |
| Cow position: | chr24:42385726-42386315 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 378 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 16, 30 |
| Conread position: | 8-283 |
| Cow position: | chr24:16652064-16651782 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 15, 167 |
| Conread position: | 8-414 |
| Cow position: | chr24:41200403-41200000 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 251 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 14, 106 |
| Conread position: | 8-451 |
| Cow position: | chr24:39676222-39676688 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 308 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 14, 234 |
| Conread position: | 8-464 |
| Cow position: | chr24:42585276-42584805 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 301 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 15, 74 |
| Conread position: | 8-552 |
| Cow position: | chr24:22912366-22911789 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 375 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 12, 209 |
| Conread position: | 11-453 |
| Cow position: | chr24:6054824-6055285 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 307 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 109, 224 |
| Conread position: | 13-587 |
| Cow position: | chr24:17763918-17764518 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 378 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 9, 69 |
| Conread position: | 17-220 |
| Cow position: | chr24:14741273-14741066 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 17-303 |
| Cow position: | chr24:28689092-28688799 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 101, 122 |
| Conread position: | 23-451 |
| Cow position: | chr24:31382060-31381629 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 46, 55 |
| Conread position: | 40-549 |
| Cow position: | chr24:37887007-37886463 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 344 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 81, 42 |
| Conread position: | 51-579 |
| Cow position: | chr24:27587413-27586867 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 352 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 82, 175 |
| Conread position: | 83-302 |
| Cow position: | chr24:21888245-21888020 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 44, 130 |
| Conread position: | 117-330 |
| Cow position: | chr24:4174994-4175212 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 117-443 |
| Cow position: | chr24:10575156-10575488 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 29, 239 |
| Conread position: | 121-293 |
| Cow position: | chr24:33188169-33187994 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 129-329 |
| Cow position: | chr24:23160909-23160703 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 96, 110 |
| Conread position: | 129-465 |
| Cow position: | chr24:1294613-1294962 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 232 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 27, 117 |
| Conread position: | 130-468 |
| Cow position: | chr24:42097381-42097029 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 92, 34 |
| Conread position: | 164-578 |
| Cow position: | chr24:6502763-6503173 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 271 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 58, 152 |
| Conread position: | 179-330 |
| Cow position: | chr24:39048984-39049135 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 43, 118 |
| Conread position: | 188-563 |
| Cow position: | chr24:20121594-20121970 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 34, 77 |
Show alignments to all cow chromosomes.