Cow genome map
| Conread name: | Ss1.1-rspc025_m8.5 |
| Conread position: | 1-544 |
| Cow position: | chr25:23845443-23845995 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 359 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 114, 81 |
| Conread position: | 3-281 |
| Cow position: | chr25:20075877-20075585 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 3-299 |
| Cow position: | chr25:18072624-18072315 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 3-302 |
| Cow position: | chr25:13787369-13787061 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 204 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 3-302 |
| Cow position: | chr25:17658017-17657707 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 19, 252 |
| Conread position: | 3-302 |
| Cow position: | chr25:18474596-18474285 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 19, 155 |
| Conread position: | 3-303 |
| Cow position: | chr25:30325976-30326276 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 21, 75 |
| Conread position: | 3-303 |
| Cow position: | chr25:41356397-41356713 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 3-448 |
| Cow position: | chr25:23394267-23393801 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 300 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 19, 247 |
| Conread position: | 3-452 |
| Cow position: | chr25:30162757-30163235 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 321 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 14, 270 |
| Conread position: | 3-566 |
| Cow position: | chr25:32567255-32566666 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 385 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 19, 219 |
| Conread position: | 3-579 |
| Cow position: | chr25:13960464-13959857 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 392 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 19, 272 |
| Conread position: | 4-256 |
| Cow position: | chr25:17717005-17716741 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 4-292 |
| Cow position: | chr25:22713141-22712843 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 18, 252 |
| Conread position: | 4-302 |
| Cow position: | chr25:8935200-8934883 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-305 |
| Cow position: | chr25:27145826-27145509 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-306 |
| Cow position: | chr25:10606318-10606636 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 265 |
| Conread position: | 4-388 |
| Cow position: | chr25:14443887-14444255 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 18, 52 |
| Conread position: | 4-456 |
| Cow position: | chr25:15284985-15284517 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 149 |
| Conread position: | 4-467 |
| Cow position: | chr25:31954562-31955025 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 314 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 15, 34 |
| Conread position: | 4-509 |
| Cow position: | chr25:13242003-13241465 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 339 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 16, 381 |
| Conread position: | 4-563 |
| Cow position: | chr25:17905044-17904442 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 372 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 18, 383 |
| Conread position: | 4-579 |
| Cow position: | chr25:16870913-16871519 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 65 |
| Conread position: | 4-579 |
| Cow position: | chr25:23863978-23864571 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 375 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 15, 37 |
| Conread position: | 7-259 |
| Cow position: | chr25:9985821-9985577 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 15, 72 |
| Conread position: | 7-293 |
| Cow position: | chr25:16401490-16401796 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 7-299 |
| Cow position: | chr25:30079036-30079332 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 120, 9 |
| Conread position: | 7-302 |
| Cow position: | chr25:9413744-9413434 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 7-303 |
| Cow position: | chr25:36701036-36700736 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 209 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 11, 34 |
| Conread position: | 7-453 |
| Cow position: | chr25:28981787-28981318 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 314 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 14, 60 |
| Conread position: | 7-552 |
| Cow position: | chr25:21414072-21414634 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 371 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 16, 331 |
| Conread position: | 7-581 |
| Cow position: | chr25:27199343-27198749 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 392 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 16, 65 |
| Conread position: | 8-303 |
| Cow position: | chr25:32663340-32663042 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 15, 220 |
| Conread position: | 8-303 |
| Cow position: | chr25:34334253-34334560 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 11, 56 |
| Conread position: | 8-318 |
| Cow position: | chr25:30636345-30636669 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 9-451 |
| Cow position: | chr25:1025043-1025519 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 302 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 18, 230 |
| Conread position: | 13-579 |
| Cow position: | chr25:23462760-23462167 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 70 |
| Conread position: | 17-302 |
| Cow position: | chr25:11956215-11955918 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 98, 46 |
| Conread position: | 17-394 |
| Cow position: | chr25:20369487-20369086 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 27, 65 |
| Conread position: | 17-453 |
| Cow position: | chr25:17520972-17521425 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 295 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 26, 16 |
| Conread position: | 17-565 |
| Cow position: | chr25:24663900-24664475 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 378 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 100, 55 |
| Conread position: | 19-556 |
| Cow position: | chr25:19107842-19107291 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 367 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 8, 59 |
| Conread position: | 22-294 |
| Cow position: | chr25:27023470-27023189 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 83, 209 |
| Conread position: | 37-394 |
| Cow position: | chr25:24951741-24952105 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 28, 93 |
| Conread position: | 42-318 |
| Cow position: | chr25:24077395-24077693 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 15, 8 |
| Conread position: | 42-509 |
| Cow position: | chr25:35084488-35084957 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 316 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 181, 69 |
| Conread position: | 42-557 |
| Cow position: | chr25:11151727-11152279 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 347 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 79, 354 |
| Conread position: | 43-277 |
| Cow position: | chr25:34989816-34990053 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 65, 39 |
| Conread position: | 55-303 |
| Cow position: | chr25:11758446-11758700 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 90, 175 |
| Conread position: | 86-580 |
| Cow position: | chr25:10737397-10737919 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 343 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 94-580 |
| Cow position: | chr25:13005420-13005913 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 325 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 129, 11 |
| Conread position: | 114-580 |
| Cow position: | chr25:38635642-38635153 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 321 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 8, 226 |
| Conread position: | 121-318 |
| Cow position: | chr25:9909045-9908844 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 21, 46 |
| Conread position: | 125-423 |
| Cow position: | chr25:27977560-27977872 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 32, 10 |
| Conread position: | 129-446 |
| Cow position: | chr25:18666659-18666347 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 212 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 90, 209 |
| Conread position: | 129-464 |
| Cow position: | chr25:19425362-19425704 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 230 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 95, 24 |
| Conread position: | 150-550 |
| Cow position: | chr25:39662306-39662709 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 273 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 73, 147 |
| Conread position: | 154-302 |
| Cow position: | chr25:21447340-21447491 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 158-579 |
| Cow position: | chr25:14748134-14748565 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 284 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 17, 115 |
| Conread position: | 172-580 |
| Cow position: | chr25:17904091-17903692 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 50, 112 |
| Conread position: | 189-579 |
| Cow position: | chr25:30112321-30112733 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 94, 113 |
Show alignments to all cow chromosomes.