Cow genome map
| Conread name: | Ss1.1-rspc025_m8.5 |
| Conread position: | 1-313 |
| Cow position: | chr28:26796387-26796071 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 212 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 22, 40 |
| Conread position: | 1-327 |
| Cow position: | chr28:18735879-18735540 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 119, 61 |
| Conread position: | 1-511 |
| Cow position: | chr28:5817263-5816756 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 345 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 21, 80 |
| Conread position: | 2-242 |
| Cow position: | chr28:13143255-13143499 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 3-293 |
| Cow position: | chr28:600527-600830 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 3-320 |
| Cow position: | chr28:30262753-30263074 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 18, 115 |
| Conread position: | 3-462 |
| Cow position: | chr28:10473615-10473138 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 311 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 19, 81 |
| Conread position: | 3-592 |
| Cow position: | chr28:8618876-8619498 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 394 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 19, 101 |
| Conread position: | 4-299 |
| Cow position: | chr28:14234397-14234104 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 18, 75 |
| Conread position: | 4-299 |
| Cow position: | chr28:22735735-22735432 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-302 |
| Cow position: | chr28:7888424-7888741 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-302 |
| Cow position: | chr28:9710493-9710810 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-302 |
| Cow position: | chr28:10870750-10870434 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 18, 281 |
| Conread position: | 4-302 |
| Cow position: | chr28:28357124-28357440 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 18, 108 |
| Conread position: | 4-302 |
| Cow position: | chr28:30032000-30031686 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 18, 95 |
| Conread position: | 4-302 |
| Cow position: | chr28:32589360-32589043 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-303 |
| Cow position: | chr28:10295451-10295143 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 24, 267 |
| Conread position: | 4-305 |
| Cow position: | chr28:30249787-30249467 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 209 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-330 |
| Cow position: | chr28:13907101-13906754 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 15, 105 |
| Conread position: | 4-550 |
| Cow position: | chr28:20967008-20967597 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 365 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 18, 403 |
| Conread position: | 4-558 |
| Cow position: | chr28:526971-526397 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 369 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 109, 79 |
| Conread position: | 4-562 |
| Cow position: | chr28:9287732-9288333 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 378 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 18, 386 |
| Conread position: | 7-305 |
| Cow position: | chr28:1811338-1811642 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 15, 159 |
| Conread position: | 7-366 |
| Cow position: | chr28:34510610-34510970 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 20, 57 |
| Conread position: | 7-535 |
| Cow position: | chr28:5804921-5804356 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 350 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 9, 342 |
| Conread position: | 7-592 |
| Cow position: | chr28:27029675-27030285 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 77 |
| Conread position: | 8-543 |
| Cow position: | chr28:20361860-20361301 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 364 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 25, 76 |
| Conread position: | 9-569 |
| Cow position: | chr28:13975972-13975383 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 42 |
| Conread position: | 10-481 |
| Cow position: | chr28:14929519-14929021 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 310 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 14, 41 |
| Conread position: | 11-555 |
| Cow position: | chr28:29785778-29786335 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 357 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 87, 31 |
| Conread position: | 13-294 |
| Cow position: | chr28:18586483-18586760 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 10, 47 |
| Conread position: | 17-302 |
| Cow position: | chr28:8786956-8786660 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 53, 61 |
| Conread position: | 22-304 |
| Cow position: | chr28:22825610-22825326 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 87, 216 |
| Conread position: | 22-453 |
| Cow position: | chr28:34009439-34008981 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 287 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 16, 194 |
| Conread position: | 22-579 |
| Cow position: | chr28:22233855-22234437 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 375 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 69, 17 |
| Conread position: | 28-470 |
| Cow position: | chr28:22668230-22667791 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 255, 92 |
| Conread position: | 38-330 |
| Cow position: | chr28:12683836-12683531 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 6, 16 |
| Conread position: | 39-451 |
| Cow position: | chr28:22277208-22277637 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 280 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 60, 43 |
| Conread position: | 43-281 |
| Cow position: | chr28:12694345-12694105 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 53, 33 |
| Conread position: | 43-558 |
| Cow position: | chr28:25700030-25700538 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 340 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 62, 116 |
| Conread position: | 45-324 |
| Cow position: | chr28:25773955-25773665 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 73, 18 |
| Conread position: | 46-568 |
| Cow position: | chr28:6262946-6262407 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 356 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 59, 235 |
| Conread position: | 55-295 |
| Cow position: | chr28:9861785-9862026 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 167, 22 |
| Conread position: | 58-462 |
| Cow position: | chr28:34841078-34840673 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 276 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 74, 212 |
| Conread position: | 66-442 |
| Cow position: | chr28:20774292-20774674 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 137, 62 |
| Conread position: | 79-326 |
| Cow position: | chr28:4045777-4045520 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 68, 42 |
| Conread position: | 93-565 |
| Cow position: | chr28:25913253-25913742 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 323 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 10, 147 |
| Conread position: | 105-555 |
| Cow position: | chr28:9236734-9237203 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 299 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 28, 191 |
| Conread position: | 114-453 |
| Cow position: | chr28:4386536-4386874 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 169, 21 |
| Conread position: | 117-434 |
| Cow position: | chr28:30476649-30476971 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 215 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 11, 83 |
| Conread position: | 129-579 |
| Cow position: | chr28:11005488-11005004 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 313 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 44, 162 |
| Conread position: | 132-453 |
| Cow position: | chr28:8788843-8788525 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 151, 46 |
| Conread position: | 149-487 |
| Cow position: | chr28:32823183-32823528 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 218 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 72, 212 |
| Conread position: | 155-294 |
| Cow position: | chr28:25718365-25718503 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 128, 44 |
| Conread position: | 167-366 |
| Cow position: | chr28:2078323-2078115 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 55, 199 |
Show alignments to all cow chromosomes.