Cow genome map
| Conread name: | Ss1.1-rspc025_m8.5 |
| Conread position: | 1-579 |
| Cow position: | chr29:92965-92369 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 40 |
| Conread position: | 1-579 |
| Cow position: | chr29:20254798-20254181 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 380 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 2-361 |
| Cow position: | chr29:7078727-7079097 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 20, 228 |
| Conread position: | 3-302 |
| Cow position: | chr29:9638905-9639214 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 106 |
| Conread position: | 3-302 |
| Cow position: | chr29:11798413-11798098 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 19, 31 |
| Conread position: | 3-302 |
| Cow position: | chr29:35228302-35227988 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 23, 45 |
| Conread position: | 3-305 |
| Cow position: | chr29:15943973-15943659 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 19, 311 |
| Conread position: | 3-375 |
| Cow position: | chr29:45523010-45523410 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 18, 317 |
| Conread position: | 3-462 |
| Cow position: | chr29:13129021-13129481 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 299 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 9, 96 |
| Conread position: | 3-548 |
| Cow position: | chr29:5311125-5311695 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 360 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 16, 449 |
| Conread position: | 3-572 |
| Cow position: | chr29:16051741-16052330 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 363 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 15, 97 |
| Conread position: | 3-577 |
| Cow position: | chr29:32807992-32807397 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 379 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 19, 355 |
| Conread position: | 3-579 |
| Cow position: | chr29:20642109-20641530 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 388 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 20, 30 |
| Conread position: | 4-255 |
| Cow position: | chr29:6259829-6260084 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 176 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-296 |
| Cow position: | chr29:15570166-15569854 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-302 |
| Cow position: | chr29:2461788-2461471 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-302 |
| Cow position: | chr29:32515960-32515643 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-302 |
| Cow position: | chr29:40294939-40294622 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-303 |
| Cow position: | chr29:30357659-30357972 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 19, 88 |
| Conread position: | 4-475 |
| Cow position: | chr29:34851386-34850889 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 319 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 18, 363 |
| Conread position: | 4-577 |
| Cow position: | chr29:22280004-22279390 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 397 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 18, 174 |
| Conread position: | 7-303 |
| Cow position: | chr29:31041875-31042190 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 16, 207 |
| Conread position: | 7-418 |
| Cow position: | chr29:1004497-1004065 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 293 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 13, 30 |
| Conread position: | 7-436 |
| Cow position: | chr29:23005037-23004609 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 133, 104 |
| Conread position: | 7-565 |
| Cow position: | chr29:26458461-26459047 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 384 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 16, 33 |
| Conread position: | 7-579 |
| Cow position: | chr29:13027832-13027236 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 381 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 15, 76 |
| Conread position: | 7-579 |
| Cow position: | chr29:36323650-36323039 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 57 |
| Conread position: | 8-580 |
| Cow position: | chr29:44598964-44599542 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 377 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 14, 26 |
| Conread position: | 9-437 |
| Cow position: | chr29:26016885-26016445 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 297 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 85, 8 |
| Conread position: | 10-330 |
| Cow position: | chr29:1510696-1511017 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 9, 213 |
| Conread position: | 15-438 |
| Cow position: | chr29:43626008-43626450 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 72 |
| Conread position: | 17-299 |
| Cow position: | chr29:4480776-4481071 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 17-302 |
| Cow position: | chr29:30106242-30106530 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 102, 64 |
| Conread position: | 17-302 |
| Cow position: | chr29:35265535-35265232 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 17-354 |
| Cow position: | chr29:25456684-25457049 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 6, 31 |
| Conread position: | 17-394 |
| Cow position: | chr29:3198835-3199226 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 252 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 205, 64 |
| Conread position: | 17-572 |
| Cow position: | chr29:34120897-34121480 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 384 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 104, 361 |
| Conread position: | 21-275 |
| Cow position: | chr29:34390519-34390780 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 100, 57 |
| Conread position: | 42-453 |
| Cow position: | chr29:40463485-40463057 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 282 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 38, 59 |
| Conread position: | 42-579 |
| Cow position: | chr29:2318626-2318084 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 345 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 68, 104 |
| Conread position: | 42-579 |
| Cow position: | chr29:5635913-5635356 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 354 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 68, 35 |
| Conread position: | 43-467 |
| Cow position: | chr29:34962666-34962226 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 284 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 30, 37 |
| Conread position: | 44-465 |
| Cow position: | chr29:27687192-27686772 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 285 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 69, 41 |
| Conread position: | 47-306 |
| Cow position: | chr29:133550-133286 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 81, 21 |
| Conread position: | 50-302 |
| Cow position: | chr29:30517491-30517759 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 71, 200 |
| Conread position: | 52-296 |
| Cow position: | chr29:20999786-20999536 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 26 |
| Conread position: | 87-435 |
| Cow position: | chr29:18272913-18272562 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 231 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 37, 5 |
| Conread position: | 108-577 |
| Cow position: | chr29:13646412-13646881 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 306 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 8, 108 |
| Conread position: | 129-444 |
| Cow position: | chr29:16639258-16638938 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 35, 102 |
| Conread position: | 129-518 |
| Cow position: | chr29:22269073-22268678 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 51, 174 |
| Conread position: | 149-562 |
| Cow position: | chr29:4083031-4083481 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 291 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 31, 211 |
Show alignments to all cow chromosomes.