Cow genome map
| Conread name: | Ss1.1-rspc025_m8.5 |
| Conread position: | 1-278 |
| Cow position: | chr4:65443702-65443982 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 34, 40 |
| Conread position: | 1-288 |
| Cow position: | chr4:45303128-45303424 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 44, 36 |
| Conread position: | 1-305 |
| Cow position: | chr4:41337660-41337354 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 22, 50 |
| Conread position: | 1-445 |
| Cow position: | chr4:32410015-32410482 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 318 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 22, 96 |
| Conread position: | 1-456 |
| Cow position: | chr4:33721825-33721364 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 302 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 17, 303 |
| Conread position: | 1-464 |
| Cow position: | chr4:27912880-27912408 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 303 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 17, 35 |
| Conread position: | 1-579 |
| Cow position: | chr4:47136961-47136375 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 377 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 39, 26 |
| Conread position: | 2-277 |
| Cow position: | chr4:21056577-21056297 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 3-247 |
| Cow position: | chr4:33443262-33443512 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 3-254 |
| Cow position: | chr4:43045790-43046042 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 20, 105 |
| Conread position: | 3-284 |
| Cow position: | chr4:2190946-2191241 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 3-296 |
| Cow position: | chr4:54757912-54758215 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 19, 36 |
| Conread position: | 3-302 |
| Cow position: | chr4:22905025-22904715 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 19, 126 |
| Conread position: | 3-306 |
| Cow position: | chr4:26548815-26548499 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 19, 268 |
| Conread position: | 3-321 |
| Cow position: | chr4:1499744-1500071 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 19, 300 |
| Conread position: | 3-439 |
| Cow position: | chr4:34224750-34224298 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 297 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 20, 188 |
| Conread position: | 3-561 |
| Cow position: | chr4:26625254-26625838 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 282 |
| Conread position: | 3-578 |
| Cow position: | chr4:44733968-44733360 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 373 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 19, 381 |
| Conread position: | 3-579 |
| Cow position: | chr4:33496911-33496295 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 386 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 19, 365 |
| Conread position: | 4-302 |
| Cow position: | chr4:22014073-22014386 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 18, 232 |
| Conread position: | 4-323 |
| Cow position: | chr4:49828567-49828239 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 99, 73 |
| Conread position: | 4-547 |
| Cow position: | chr4:58292081-58291506 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 363 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 18, 140 |
| Conread position: | 4-567 |
| Cow position: | chr4:1984252-1983655 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 387 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 117, 186 |
| Conread position: | 4-593 |
| Cow position: | chr4:32000897-32000307 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 391 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 117, 11 |
| Conread position: | 7-304 |
| Cow position: | chr4:8858614-8858316 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 67, 43 |
| Conread position: | 7-318 |
| Cow position: | chr4:60785845-60785522 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 15, 22 |
| Conread position: | 7-393 |
| Cow position: | chr4:29565282-29565678 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 251 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 13, 75 |
| Conread position: | 7-411 |
| Cow position: | chr4:39233344-39233775 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 287 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 14, 377 |
| Conread position: | 7-434 |
| Cow position: | chr4:39510825-39511249 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 297 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 15, 272 |
| Conread position: | 7-435 |
| Cow position: | chr4:21140200-21139752 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 310 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 15, 76 |
| Conread position: | 7-446 |
| Cow position: | chr4:49907387-49906925 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 310 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 16, 89 |
| Conread position: | 7-579 |
| Cow position: | chr4:37786647-37786035 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 384 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 14, 191 |
| Conread position: | 8-547 |
| Cow position: | chr4:35144198-35144780 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 366 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 14, 363 |
| Conread position: | 9-451 |
| Cow position: | chr4:29134394-29134833 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 297 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 97, 252 |
| Conread position: | 11-305 |
| Cow position: | chr4:60719009-60718704 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 11, 62 |
| Conread position: | 13-278 |
| Cow position: | chr4:12613560-12613282 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 59, 219 |
| Conread position: | 13-302 |
| Cow position: | chr4:68066686-68066386 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 9, 27 |
| Conread position: | 14-303 |
| Cow position: | chr4:35122587-35122862 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 208, 19 |
| Conread position: | 14-330 |
| Cow position: | chr4:10708509-10708841 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 116, 195 |
| Conread position: | 14-453 |
| Cow position: | chr4:54037544-54037101 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 307 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 106, 198 |
| Conread position: | 15-210 |
| Cow position: | chr4:56303393-56303185 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 15-545 |
| Cow position: | chr4:47079075-47079623 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 357 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 72, 214 |
| Conread position: | 16-318 |
| Cow position: | chr4:24484403-24484096 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 78, 11 |
| Conread position: | 17-209 |
| Cow position: | chr4:20615301-20615500 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 17-441 |
| Cow position: | chr4:25983613-25983172 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 52, 60 |
| Conread position: | 17-453 |
| Cow position: | chr4:52252838-52252386 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 300 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 99, 91 |
| Conread position: | 20-279 |
| Cow position: | chr4:26671377-26671641 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 9, 63 |
| Conread position: | 21-318 |
| Cow position: | chr4:43658350-43658035 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 23-391 |
| Cow position: | chr4:50604484-50604111 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 250 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 199, 11 |
| Conread position: | 35-592 |
| Cow position: | chr4:22492585-22492003 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 389 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 81, 7 |
| Conread position: | 42-579 |
| Cow position: | chr4:27351327-27350763 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 362 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 79, 63 |
| Conread position: | 43-303 |
| Cow position: | chr4:35161245-35160978 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 73, 116 |
| Conread position: | 43-445 |
| Cow position: | chr4:62397584-62397167 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 263 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 60, 226 |
| Conread position: | 46-295 |
| Cow position: | chr4:54129747-54129493 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 84, 36 |
| Conread position: | 47-331 |
| Cow position: | chr4:49886628-49886324 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 74, 125 |
| Conread position: | 50-257 |
| Cow position: | chr4:50987827-50987613 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 67, 183 |
| Conread position: | 50-438 |
| Cow position: | chr4:51024452-51024048 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 276 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 25, 29 |
| Conread position: | 55-303 |
| Cow position: | chr4:4242321-4242063 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 15, 23 |
| Conread position: | 55-432 |
| Cow position: | chr4:36666076-36666485 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 273 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 15, 59 |
| Conread position: | 58-330 |
| Cow position: | chr4:54829420-54829700 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 63, 167 |
| Conread position: | 65-284 |
| Cow position: | chr4:49893568-49893349 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 68, 85 |
| Conread position: | 116-476 |
| Cow position: | chr4:61822528-61822177 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 241 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 109, 26 |
| Conread position: | 117-318 |
| Cow position: | chr4:49769720-49769505 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 129-550 |
| Cow position: | chr4:23544757-23544317 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 98, 109 |
| Conread position: | 129-579 |
| Cow position: | chr4:67648857-67649319 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 296 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 96, 36 |
| Conread position: | 131-569 |
| Cow position: | chr4:46031626-46031187 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 294 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 55, 86 |
| Conread position: | 133-317 |
| Cow position: | chr4:28848496-28848308 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 89, 133 |
| Conread position: | 133-562 |
| Cow position: | chr4:3082820-3082384 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 287 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 89, 134 |
| Conread position: | 135-309 |
| Cow position: | chr4:23380825-23381003 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 154-446 |
| Cow position: | chr4:32438541-32438225 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 217 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 70, 204 |
| Conread position: | 181-453 |
| Cow position: | chr4:35000661-35000946 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 41, 24 |
| Conread position: | 229-517 |
| Cow position: | chr4:36480487-36480795 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 66, 115 |
Show alignments to all cow chromosomes.