Cow genome map
| Conread name: | Ss1.1-rspc025_m8.5 |
| Conread position: | 1-235 |
| Cow position: | chr5:40891038-40891282 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1-281 |
| Cow position: | chr5:70771587-70771307 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 21, 39 |
| Conread position: | 1-284 |
| Cow position: | chr5:39448099-39448393 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-299 |
| Cow position: | chr5:15362491-15362181 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 21, 77 |
| Conread position: | 1-302 |
| Cow position: | chr5:33793327-33793014 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 17, 228 |
| Conread position: | 1-318 |
| Cow position: | chr5:48409004-48409329 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 218 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 21, 79 |
| Conread position: | 1-446 |
| Cow position: | chr5:51074677-51075143 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 307 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 17, 7 |
| Conread position: | 1-453 |
| Cow position: | chr5:52248301-52248792 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 327 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 22, 81 |
| Conread position: | 1-453 |
| Cow position: | chr5:57791630-57792091 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 297 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 22, 41 |
| Conread position: | 1-480 |
| Cow position: | chr5:55677315-55676825 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 323 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 22, 372 |
| Conread position: | 2-299 |
| Cow position: | chr5:27062814-27063102 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 18, 74 |
| Conread position: | 3-276 |
| Cow position: | chr5:41980837-41980551 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 3-292 |
| Cow position: | chr5:4199186-4199478 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 19, 144 |
| Conread position: | 3-292 |
| Cow position: | chr5:31217540-31217236 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 3-302 |
| Cow position: | chr5:52829335-52829652 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 211 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 3-303 |
| Cow position: | chr5:40262031-40262339 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 3-305 |
| Cow position: | chr5:66257075-66256764 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 18, 308 |
| Conread position: | 3-315 |
| Cow position: | chr5:34528006-34527687 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 15, 79 |
| Conread position: | 3-330 |
| Cow position: | chr5:2480869-2481209 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 29, 13 |
| Conread position: | 3-462 |
| Cow position: | chr5:51502326-51501845 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 295 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 19, 258 |
| Conread position: | 3-561 |
| Cow position: | chr5:41739094-41738524 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 377 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 7, 78 |
| Conread position: | 3-579 |
| Cow position: | chr5:3695783-3695197 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 363 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 21, 42 |
| Conread position: | 4-302 |
| Cow position: | chr5:18702988-18703294 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 18, 75 |
| Conread position: | 4-302 |
| Cow position: | chr5:36369541-36369858 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-446 |
| Cow position: | chr5:21184883-21185354 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 307 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 18, 74 |
| Conread position: | 4-453 |
| Cow position: | chr5:42004045-42003606 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 294 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 19, 74 |
| Conread position: | 4-556 |
| Cow position: | chr5:51069652-51069066 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 377 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 117, 12 |
| Conread position: | 4-557 |
| Cow position: | chr5:37715170-37715755 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 372 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 8, 248 |
| Conread position: | 4-579 |
| Cow position: | chr5:21220382-21220986 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 374 |
| Conread position: | 4-579 |
| Cow position: | chr5:49116900-49117519 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 391 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 18, 362 |
| Conread position: | 7-215 |
| Cow position: | chr5:44359329-44359121 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 15, 143 |
| Conread position: | 7-330 |
| Cow position: | chr5:820798-820468 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 16, 168 |
| Conread position: | 7-508 |
| Cow position: | chr5:34285042-34285571 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 354 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 15, 42 |
| Conread position: | 8-294 |
| Cow position: | chr5:21660793-21661096 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 11, 43 |
| Conread position: | 8-303 |
| Cow position: | chr5:54038623-54038309 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 113, 8 |
| Conread position: | 13-330 |
| Cow position: | chr5:28037522-28037194 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 5, 28 |
| Conread position: | 13-579 |
| Cow position: | chr5:24240531-24239946 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 368 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 85, 24 |
| Conread position: | 14-281 |
| Cow position: | chr5:59862089-59862365 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 107, 148 |
| Conread position: | 14-506 |
| Cow position: | chr5:49070375-49070886 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 334 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 107, 258 |
| Conread position: | 17-211 |
| Cow position: | chr5:27201421-27201612 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 17-325 |
| Cow position: | chr5:16125082-16125406 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 91, 266 |
| Conread position: | 17-578 |
| Cow position: | chr5:16960013-16960584 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 60 |
| Conread position: | 17-579 |
| Cow position: | chr5:15122866-15123449 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 358 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 96, 72 |
| Conread position: | 17-579 |
| Cow position: | chr5:41020436-41020998 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 363 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 109, 43 |
| Conread position: | 18-287 |
| Cow position: | chr5:47601199-47600917 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 101, 160 |
| Conread position: | 18-442 |
| Cow position: | chr5:72399055-72398608 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 61 |
| Conread position: | 21-446 |
| Cow position: | chr5:32261055-32261499 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 286 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 39, 11 |
| Conread position: | 28-451 |
| Cow position: | chr5:42676661-42676234 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 275 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 90, 280 |
| Conread position: | 42-454 |
| Cow position: | chr5:56657298-56657743 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 287 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 63, 347 |
| Conread position: | 42-576 |
| Cow position: | chr5:28678036-28678603 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 375 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 79, 181 |
| Conread position: | 43-302 |
| Cow position: | chr5:19420012-19420283 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 43-442 |
| Cow position: | chr5:62267728-62267341 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 48, 69 |
| Conread position: | 44-278 |
| Cow position: | chr5:17726805-17727054 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 31, 163 |
| Conread position: | 46-284 |
| Cow position: | chr5:54454895-54454649 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 23, 37 |
| Conread position: | 46-298 |
| Cow position: | chr5:41608626-41608374 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 86, 106 |
| Conread position: | 46-303 |
| Cow position: | chr5:53148864-53149136 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 70, 17 |
| Conread position: | 46-417 |
| Cow position: | chr5:28528917-28529312 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 75, 235 |
| Conread position: | 80-450 |
| Cow position: | chr5:37653676-37653297 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 47, 242 |
| Conread position: | 82-304 |
| Cow position: | chr5:18465906-18465674 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 38, 79 |
| Conread position: | 85-456 |
| Cow position: | chr5:62384747-62384361 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 20, 234 |
| Conread position: | 99-446 |
| Cow position: | chr5:24925124-24924767 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 56, 5 |
| Conread position: | 115-453 |
| Cow position: | chr5:3446870-3447208 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 27, 190 |
| Conread position: | 118-563 |
| Cow position: | chr5:68485719-68485266 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 309 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 14, 77 |
| Conread position: | 122-580 |
| Cow position: | chr5:8201631-8201182 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 317 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 115, 129 |
| Conread position: | 129-447 |
| Cow position: | chr5:15462138-15461807 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 90, 240 |
| Conread position: | 130-453 |
| Cow position: | chr5:70847070-70846746 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 213 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 92, 113 |
| Conread position: | 131-587 |
| Cow position: | chr5:19623821-19623354 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 293 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 67, 18 |
| Conread position: | 132-587 |
| Cow position: | chr5:72298964-72299443 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 313 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 81, 237 |
| Conread position: | 135-317 |
| Cow position: | chr5:58732848-58733034 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 153-451 |
| Cow position: | chr5:67618588-67618266 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 11, 113 |
| Conread position: | 158-579 |
| Cow position: | chr5:27482517-27482090 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 282 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 74, 87 |
Show alignments to all cow chromosomes.