Cow genome map
| Conread name: | Ss1.1-rspc025_m8.5 |
| Conread position: | 1-244 |
| Cow position: | chr6:53133373-53133630 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 17, 203 |
| Conread position: | 1-256 |
| Cow position: | chr6:68629042-68629310 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-316 |
| Cow position: | chr6:57967544-57967216 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 21, 173 |
| Conread position: | 1-442 |
| Cow position: | chr6:32420533-32420070 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 296 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 19, 360 |
| Conread position: | 1-579 |
| Cow position: | chr6:40550113-40550727 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 388 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 21, 75 |
| Conread position: | 1-579 |
| Cow position: | chr6:47574378-47573772 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 383 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 21, 50 |
| Conread position: | 3-299 |
| Cow position: | chr6:12927159-12926850 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 3-302 |
| Cow position: | chr6:44098273-44097980 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 19, 77 |
| Conread position: | 3-305 |
| Cow position: | chr6:3271892-3272211 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 19, 177 |
| Conread position: | 3-305 |
| Cow position: | chr6:44921012-44920695 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 19, 195 |
| Conread position: | 3-318 |
| Cow position: | chr6:15769735-15770044 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 17, 60 |
| Conread position: | 3-318 |
| Cow position: | chr6:41645198-41645518 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 19, 55 |
| Conread position: | 3-453 |
| Cow position: | chr6:36234021-36234483 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 302 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 9, 116 |
| Conread position: | 3-514 |
| Cow position: | chr6:15137582-15138135 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 354 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 19, 363 |
| Conread position: | 3-562 |
| Cow position: | chr6:16418100-16418693 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 374 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 19, 156 |
| Conread position: | 3-579 |
| Cow position: | chr6:34494263-34493647 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 385 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 19, 364 |
| Conread position: | 3-579 |
| Cow position: | chr6:40975756-40975158 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 383 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 19, 263 |
| Conread position: | 3-579 |
| Cow position: | chr6:60876886-60876272 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 387 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 19, 362 |
| Conread position: | 4-299 |
| Cow position: | chr6:34017134-34017446 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-302 |
| Cow position: | chr6:7216375-7216068 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 18, 28 |
| Conread position: | 4-304 |
| Cow position: | chr6:37217229-37216910 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-384 |
| Cow position: | chr6:49380413-49380797 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 14, 82 |
| Conread position: | 4-456 |
| Cow position: | chr6:38801602-38802070 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 310 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 14, 233 |
| Conread position: | 4-512 |
| Cow position: | chr6:32069909-32070404 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 329 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 102, 35 |
| Conread position: | 4-565 |
| Cow position: | chr6:9235102-9234498 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 377 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 18, 368 |
| Conread position: | 4-579 |
| Cow position: | chr6:36961869-36962489 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 401 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 19, 385 |
| Conread position: | 6-437 |
| Cow position: | chr6:40031618-40031180 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 283 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 16, 188 |
| Conread position: | 7-285 |
| Cow position: | chr6:47383172-47382885 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 15, 167 |
| Conread position: | 7-551 |
| Cow position: | chr6:15991356-15991940 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 379 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 15, 192 |
| Conread position: | 8-303 |
| Cow position: | chr6:2324762-2325049 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 14, 57 |
| Conread position: | 8-451 |
| Cow position: | chr6:15481140-15480686 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 285 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 61, 79 |
| Conread position: | 8-579 |
| Cow position: | chr6:15154676-15154082 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 380 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 118, 32 |
| Conread position: | 13-299 |
| Cow position: | chr6:33896070-33896365 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 5, 21 |
| Conread position: | 17-242 |
| Cow position: | chr6:33894883-33895103 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 104, 15 |
| Conread position: | 17-302 |
| Cow position: | chr6:46283529-46283826 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 102, 189 |
| Conread position: | 17-302 |
| Cow position: | chr6:56451530-56451822 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 17-323 |
| Cow position: | chr6:52976911-52977228 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 57, 97 |
| Conread position: | 17-451 |
| Cow position: | chr6:2052974-2053411 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 284 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 126, 70 |
| Conread position: | 17-557 |
| Cow position: | chr6:31304584-31304024 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 362 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 106, 41 |
| Conread position: | 18-453 |
| Cow position: | chr6:23529521-23529054 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 311 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 104, 124 |
| Conread position: | 29-305 |
| Cow position: | chr6:40096852-40096568 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 87, 247 |
| Conread position: | 43-444 |
| Cow position: | chr6:16274676-16274247 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 27, 35 |
| Conread position: | 66-580 |
| Cow position: | chr6:9046989-9047509 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 335 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 32, 39 |
| Conread position: | 116-569 |
| Cow position: | chr6:7920607-7921055 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 309 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 107, 19 |
| Conread position: | 120-579 |
| Cow position: | chr6:47848471-47848933 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 293 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 101, 15 |
| Conread position: | 123-587 |
| Cow position: | chr6:10364801-10365287 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 333 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 11, 250 |
| Conread position: | 130-387 |
| Cow position: | chr6:1525096-1524840 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 92, 190 |
| Conread position: | 158-568 |
| Cow position: | chr6:6120964-6121374 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 273 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 135, 27 |
| Conread position: | 195-556 |
| Cow position: | chr6:7940404-7940794 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 27, 76 |
| Conread position: | 206-569 |
| Cow position: | chr6:23914869-23914488 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 245 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 19, 161 |
Show alignments to all cow chromosomes.