Cow genome map
| Conread name: | Ss1.1-rspc025_m8.5 |
| Conread position: | 1-457 |
| Cow position: | chr7:34832690-34832221 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 308 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 116, 10 |
| Conread position: | 1-517 |
| Cow position: | chr7:51941927-51941382 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 349 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 115, 329 |
| Conread position: | 2-303 |
| Cow position: | chr7:66136488-66136175 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 16, 198 |
| Conread position: | 2-579 |
| Cow position: | chr7:23130483-23129873 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 380 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 21, 76 |
| Conread position: | 3-276 |
| Cow position: | chr7:59558710-59558993 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 3-296 |
| Cow position: | chr7:41475031-41474728 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 19, 58 |
| Conread position: | 3-299 |
| Cow position: | chr7:49069957-49070265 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 18, 123 |
| Conread position: | 3-302 |
| Cow position: | chr7:33068857-33069143 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 15, 40 |
| Conread position: | 3-305 |
| Cow position: | chr7:36128433-36128127 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 16, 76 |
| Conread position: | 3-306 |
| Cow position: | chr7:62360971-62360668 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 19, 249 |
| Conread position: | 3-557 |
| Cow position: | chr7:28536408-28535841 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 369 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 15, 109 |
| Conread position: | 3-578 |
| Cow position: | chr7:13530246-13530841 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 376 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 19, 126 |
| Conread position: | 3-579 |
| Cow position: | chr7:39795541-39794928 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 388 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 19, 67 |
| Conread position: | 3-587 |
| Cow position: | chr7:48147012-48146413 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 401 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 19, 39 |
| Conread position: | 4-299 |
| Cow position: | chr7:4402586-4402889 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 117, 11 |
| Conread position: | 4-299 |
| Cow position: | chr7:47045901-47045591 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 19, 75 |
| Conread position: | 4-300 |
| Cow position: | chr7:13103641-13103936 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 61, 135 |
| Conread position: | 4-302 |
| Cow position: | chr7:7278238-7277921 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-302 |
| Cow position: | chr7:48548475-48548785 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 17, 74 |
| Conread position: | 4-302 |
| Cow position: | chr7:56887331-56887646 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 18, 201 |
| Conread position: | 4-305 |
| Cow position: | chr7:34678234-34678540 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 18, 36 |
| Conread position: | 4-330 |
| Cow position: | chr7:2098478-2098809 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 128, 83 |
| Conread position: | 4-330 |
| Cow position: | chr7:6173185-6172846 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 226 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 19, 236 |
| Conread position: | 4-387 |
| Cow position: | chr7:58656506-58656122 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 132, 35 |
| Conread position: | 4-412 |
| Cow position: | chr7:23240054-23239631 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 275 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 18, 60 |
| Conread position: | 4-451 |
| Cow position: | chr7:3634077-3634543 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 304 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 18, 246 |
| Conread position: | 4-451 |
| Cow position: | chr7:25230711-25230236 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 304 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 18, 367 |
| Conread position: | 4-462 |
| Cow position: | chr7:34213259-34212779 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 321 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 18, 94 |
| Conread position: | 4-579 |
| Cow position: | chr7:12506315-12505710 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 391 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 14, 37 |
| Conread position: | 4-579 |
| Cow position: | chr7:44523569-44524162 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 389 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 19, 95 |
| Conread position: | 7-330 |
| Cow position: | chr7:21914847-21914516 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 17, 159 |
| Conread position: | 7-451 |
| Cow position: | chr7:24534526-24534055 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 305 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 16, 75 |
| Conread position: | 7-459 |
| Cow position: | chr7:55810591-55810120 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 316 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 16, 258 |
| Conread position: | 7-555 |
| Cow position: | chr7:58331267-58331826 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 349 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 16, 31 |
| Conread position: | 7-578 |
| Cow position: | chr7:26022453-26021855 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 395 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 17, 7 |
| Conread position: | 8-257 |
| Cow position: | chr7:14343840-14344097 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 8-294 |
| Cow position: | chr7:29748711-29748412 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 14, 242 |
| Conread position: | 8-303 |
| Cow position: | chr7:23228961-23228651 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 14, 70 |
| Conread position: | 8-328 |
| Cow position: | chr7:37056515-37056191 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 10, 32 |
| Conread position: | 8-453 |
| Cow position: | chr7:18755252-18755707 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 290 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 14, 31 |
| Conread position: | 8-534 |
| Cow position: | chr7:39925058-39924536 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 350 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 14, 101 |
| Conread position: | 10-277 |
| Cow position: | chr7:3242652-3242928 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 15, 7 |
| Conread position: | 10-441 |
| Cow position: | chr7:54184248-54184685 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 12, 23 |
| Conread position: | 11-246 |
| Cow position: | chr7:23459158-23458924 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 22, 39 |
| Conread position: | 13-453 |
| Cow position: | chr7:31638204-31637734 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 310 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 9, 361 |
| Conread position: | 14-330 |
| Cow position: | chr7:4152075-4152409 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 234 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 53, 25 |
| Conread position: | 14-512 |
| Cow position: | chr7:31443023-31442527 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 340 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 64, 49 |
| Conread position: | 14-555 |
| Cow position: | chr7:10123330-10123878 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 360 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 9, 91 |
| Conread position: | 17-302 |
| Cow position: | chr7:68314602-68314308 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 18, 9 |
| Conread position: | 17-453 |
| Cow position: | chr7:4009464-4009022 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 278 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 104, 192 |
| Conread position: | 17-453 |
| Cow position: | chr7:6928989-6929436 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 298 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 18, 127 |
| Conread position: | 17-571 |
| Cow position: | chr7:24643711-24644256 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 348 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 43, 60 |
| Conread position: | 29-302 |
| Cow position: | chr7:33962732-33963016 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 88, 245 |
| Conread position: | 42-447 |
| Cow position: | chr7:18437601-18437198 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 287 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 101, 13 |
| Conread position: | 44-294 |
| Cow position: | chr7:63546075-63546330 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 44-302 |
| Cow position: | chr7:37521116-37520843 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 45-450 |
| Cow position: | chr7:31316155-31315744 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 75, 32 |
| Conread position: | 56-328 |
| Cow position: | chr7:24549085-24548805 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 65, 26 |
| Conread position: | 58-371 |
| Cow position: | chr7:56680012-56680344 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 9, 203 |
| Conread position: | 58-456 |
| Cow position: | chr7:35806145-35805742 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 274 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 63, 181 |
| Conread position: | 77-299 |
| Cow position: | chr7:5890325-5890091 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 86-323 |
| Cow position: | chr7:9137383-9137134 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 29, 84 |
| Conread position: | 116-579 |
| Cow position: | chr7:48024901-48024425 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 293 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 21, 257 |
| Conread position: | 121-579 |
| Cow position: | chr7:30716061-30716534 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 308 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 101, 14 |
| Conread position: | 123-563 |
| Cow position: | chr7:43256513-43256065 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 298 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 101, 95 |
| Conread position: | 131-587 |
| Cow position: | chr7:45612931-45612457 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 305 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 19, 129 |
| Conread position: | 132-408 |
| Cow position: | chr7:59093093-59092812 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 90, 81 |
| Conread position: | 132-592 |
| Cow position: | chr7:17329216-17328742 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 290 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 89, 214 |
| Conread position: | 143-568 |
| Cow position: | chr7:48105549-48105104 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 306 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 60, 21 |
| Conread position: | 147-567 |
| Cow position: | chr7:37180705-37180273 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 289 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 75, 104 |
| Conread position: | 155-303 |
| Cow position: | chr7:33544029-33544177 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 128, 106 |
| Conread position: | 224-579 |
| Cow position: | chr7:34665032-34664661 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 247 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 53, 121 |
Show alignments to all cow chromosomes.