Cow genome map
| Conread name: | Ss1.1-rspc025_m8.5 |
| Conread position: | 1-244 |
| Cow position: | chr8:31624760-31624508 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 11, 139 |
| Conread position: | 1-274 |
| Cow position: | chr8:35579499-35579763 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 19, 81 |
| Conread position: | 1-302 |
| Cow position: | chr8:4310230-4309914 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-315 |
| Cow position: | chr8:28982619-28982951 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 34, 276 |
| Conread position: | 1-445 |
| Cow position: | chr8:42748914-42748441 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 303 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 21, 37 |
| Conread position: | 1-451 |
| Cow position: | chr8:24889673-24889215 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 291 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 22, 109 |
| Conread position: | 1-534 |
| Cow position: | chr8:20007268-20007831 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 353 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 115, 65 |
| Conread position: | 1-563 |
| Cow position: | chr8:7573971-7574556 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 381 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 21, 227 |
| Conread position: | 1-565 |
| Cow position: | chr8:39048454-39049064 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 385 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 120, 393 |
| Conread position: | 2-281 |
| Cow position: | chr8:54610890-54611181 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 3-242 |
| Cow position: | chr8:30440628-30440878 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 19, 196 |
| Conread position: | 3-302 |
| Cow position: | chr8:32314764-32315079 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 3-303 |
| Cow position: | chr8:47466516-47466830 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 19, 45 |
| Conread position: | 3-318 |
| Cow position: | chr8:42336699-42336380 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 16, 48 |
| Conread position: | 3-461 |
| Cow position: | chr8:25534994-25534515 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 303 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 19, 360 |
| Conread position: | 3-462 |
| Cow position: | chr8:44113928-44113455 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 300 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 19, 126 |
| Conread position: | 3-514 |
| Cow position: | chr8:61197402-61197957 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 354 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 19, 365 |
| Conread position: | 3-562 |
| Cow position: | chr8:45070790-45070195 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 381 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 19, 366 |
| Conread position: | 3-579 |
| Cow position: | chr8:19053150-19052539 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 383 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 19, 362 |
| Conread position: | 3-579 |
| Cow position: | chr8:22030977-22030362 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 394 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 19, 383 |
| Conread position: | 3-579 |
| Cow position: | chr8:53004042-53004646 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 391 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 19, 133 |
| Conread position: | 4-299 |
| Cow position: | chr8:15410895-15410588 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 18, 75 |
| Conread position: | 4-302 |
| Cow position: | chr8:817342-817030 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 18, 72 |
| Conread position: | 4-302 |
| Cow position: | chr8:8382264-8381947 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-302 |
| Cow position: | chr8:36665281-36665597 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-302 |
| Cow position: | chr8:47666703-47667013 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-302 |
| Cow position: | chr8:51882191-51882504 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-303 |
| Cow position: | chr8:33174127-33174433 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 18, 36 |
| Conread position: | 4-451 |
| Cow position: | chr8:46594116-46593655 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 297 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 14, 154 |
| Conread position: | 4-466 |
| Cow position: | chr8:32497397-32497878 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 318 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 19, 66 |
| Conread position: | 4-553 |
| Cow position: | chr8:44524677-44525245 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 374 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 66, 75 |
| Conread position: | 4-563 |
| Cow position: | chr8:30554062-30554655 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 375 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 18, 237 |
| Conread position: | 4-600 |
| Cow position: | chr8:27685211-27684606 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 393 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 211, 9 |
| Conread position: | 7-302 |
| Cow position: | chr8:23384561-23384858 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 11, 76 |
| Conread position: | 7-302 |
| Cow position: | chr8:38561596-38561896 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 15, 69 |
| Conread position: | 7-303 |
| Cow position: | chr8:37534887-37534566 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 15, 201 |
| Conread position: | 7-411 |
| Cow position: | chr8:10800969-10801378 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 277 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 16, 31 |
| Conread position: | 7-453 |
| Cow position: | chr8:12455050-12454586 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 302 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 17, 62 |
| Conread position: | 7-462 |
| Cow position: | chr8:18057141-18056657 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 303 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 15, 382 |
| Conread position: | 7-466 |
| Cow position: | chr8:31222951-31222461 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 313 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 17, 278 |
| Conread position: | 7-549 |
| Cow position: | chr8:31559412-31558874 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 345 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 86, 18 |
| Conread position: | 8-244 |
| Cow position: | chr8:22153630-22153876 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 14, 166 |
| Conread position: | 8-432 |
| Cow position: | chr8:14343098-14343541 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 295 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 27, 37 |
| Conread position: | 8-565 |
| Cow position: | chr8:18457593-18457016 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 372 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 14, 48 |
| Conread position: | 9-318 |
| Cow position: | chr8:40431677-40431984 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 213 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 11, 29 |
| Conread position: | 13-294 |
| Cow position: | chr8:38385571-38385287 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 10, 51 |
| Conread position: | 13-302 |
| Cow position: | chr8:54156531-54156231 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 9, 131 |
| Conread position: | 13-448 |
| Cow position: | chr8:52000180-51999736 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 5, 83 |
| Conread position: | 14-294 |
| Cow position: | chr8:28336154-28336450 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 17-221 |
| Cow position: | chr8:28326453-28326664 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 104, 65 |
| Conread position: | 17-417 |
| Cow position: | chr8:30402559-30402970 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 87, 47 |
| Conread position: | 17-439 |
| Cow position: | chr8:11301267-11300824 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 279 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 6, 16 |
| Conread position: | 17-592 |
| Cow position: | chr8:35496354-35496944 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 378 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 95, 87 |
| Conread position: | 18-453 |
| Cow position: | chr8:21343571-21343109 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 308 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 103, 372 |
| Conread position: | 21-407 |
| Cow position: | chr8:26886348-26885945 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 100, 153 |
| Conread position: | 21-568 |
| Cow position: | chr8:6377046-6377619 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 379 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 52, 63 |
| Conread position: | 23-418 |
| Cow position: | chr8:52609580-52609177 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 101, 38 |
| Conread position: | 29-431 |
| Cow position: | chr8:19445664-19445250 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 101, 82 |
| Conread position: | 32-439 |
| Cow position: | chr8:25843166-25842744 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 272 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 11, 16 |
| Conread position: | 42-293 |
| Cow position: | chr8:36969795-36970044 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 32, 37 |
| Conread position: | 42-583 |
| Cow position: | chr8:35183333-35182773 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 366 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 79, 133 |
| Conread position: | 43-324 |
| Cow position: | chr8:31249582-31249299 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 83, 125 |
| Conread position: | 43-440 |
| Cow position: | chr8:30346925-30346504 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 284 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 78, 151 |
| Conread position: | 43-579 |
| Cow position: | chr8:30889531-30888969 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 362 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 73, 237 |
| Conread position: | 43-579 |
| Cow position: | chr8:39461434-39460868 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 364 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 68, 136 |
| Conread position: | 55-421 |
| Cow position: | chr8:14948622-14948242 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 12, 23 |
| Conread position: | 65-579 |
| Cow position: | chr8:49601758-49602292 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 355 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 58, 164 |
| Conread position: | 77-418 |
| Cow position: | chr8:27515706-27515370 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 58, 25 |
| Conread position: | 112-444 |
| Cow position: | chr8:1641089-1640745 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 18, 237 |
| Conread position: | 113-579 |
| Cow position: | chr8:32797440-32797925 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 298 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 28, 255 |
| Conread position: | 114-407 |
| Cow position: | chr8:13493900-13493601 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 210 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 108, 40 |
| Conread position: | 115-316 |
| Cow position: | chr8:45445705-45445499 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 17, 36 |
| Conread position: | 117-579 |
| Cow position: | chr8:45522920-45523391 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 317 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 91, 68 |
| Conread position: | 129-346 |
| Cow position: | chr8:20852209-20851987 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 68, 35 |
| Conread position: | 132-451 |
| Cow position: | chr8:29273158-29273489 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 219 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 90, 236 |
| Conread position: | 133-302 |
| Cow position: | chr8:38015597-38015770 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 163-579 |
| Cow position: | chr8:41742310-41741890 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 273 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 59, 134 |
| Conread position: | 171-453 |
| Cow position: | chr8:11795603-11795317 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 51, 184 |
| Conread position: | 268-553 |
| Cow position: | chr8:35581099-35581401 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 70, 91 |
Show alignments to all cow chromosomes.