Cow genome map

Conread name: Ss1.1-rspc025_m8.5

Conread position: 1-256
Cow position: chr9:53641294-53641564 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 190
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 22, 47

Conread position: 1-302
Cow position: chr9:31062200-31061895 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 197
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 21, 161

Conread position: 1-345
Cow position: chr9:49512306-49512658 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 234
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 21, 145

Conread position: 1-453
Cow position: chr9:23603647-23603170 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 176

Conread position: 1-565
Cow position: chr9:56562276-56561667 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 400
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 116, 62

Conread position: 2-278
Cow position: chr9:9986411-9986694 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 192
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 54, 14

Conread position: 3-299
Cow position: chr9:24996871-24996566 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 203
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 19, 167

Conread position: 3-299
Cow position: chr9:37193914-37194218 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 202
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 19, 150

Conread position: 3-302
Cow position: chr9:3411380-3411693 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 206
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 11, 69

Conread position: 3-305
Cow position: chr9:5886879-5887189 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 212
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 20, 202

Conread position: 3-305
Cow position: chr9:22442987-22442678 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 204
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 19, 126

Conread position: 3-321
Cow position: chr9:51760645-51760315 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 232
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 20, 59

Conread position: 3-550
Cow position: chr9:5628338-5627749 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 368
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 18, 392

Conread position: 3-562
Cow position: chr9:62669033-62669636 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 371
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 19, 400

Conread position: 3-566
Cow position: chr9:43538128-43538717 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 388
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 15, 90

Conread position: 3-577
Cow position: chr9:6365893-6365280 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 378
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 19, 325

Conread position: 3-579
Cow position: chr9:16179104-16178488 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 379
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 19, 0

Conread position: 3-586
Cow position: chr9:13472065-13472668 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 380
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 19, 251

Conread position: 4-256
Cow position: chr9:44107577-44107321 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 178
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 19, 78

Conread position: 4-281
Cow position: chr9:33659107-33659396 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 197
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 65, 22

Conread position: 4-292
Cow position: chr9:20749072-20749377 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 211
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 70, 0

Conread position: 4-302
Cow position: chr9:37253923-37253606 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 208
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 18, 0

Conread position: 4-302
Cow position: chr9:42053012-42053328 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 204
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 4-302
Cow position: chr9:42475568-42475881 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 207
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 18, 0

Conread position: 4-318
Cow position: chr9:10111487-10111170 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 208
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 19, 94

Conread position: 4-437
Cow position: chr9:12038337-12037899 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 289
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 18, 36

Conread position: 4-448
Cow position: chr9:32625325-32625794 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 319
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 65, 206

Conread position: 4-452
Cow position: chr9:13493248-13492797 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 304
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 18, 68

Conread position: 4-453
Cow position: chr9:56264732-56265211 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 310
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 30, 7

Conread position: 4-521
Cow position: chr9:47808055-47808579 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 320
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 19, 39

Conread position: 7-302
Cow position: chr9:58674393-58674706 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 206
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 15, 0

Conread position: 7-347
Cow position: chr9:22378311-22378683 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 249
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 14, 358

Conread position: 7-453
Cow position: chr9:46270056-46270521 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 301
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 13, 193

Conread position: 7-562
Cow position: chr9:40142844-40143426 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 379
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 15, 34

Conread position: 7-579
Cow position: chr9:18506313-18506923 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 383
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 15, 354

Conread position: 8-302
Cow position: chr9:49258993-49259305 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 206
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 10, 35

Conread position: 8-353
Cow position: chr9:46194842-46195196 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 243
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 19, 81

Conread position: 8-412
Cow position: chr9:44516316-44516731 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 264
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 125, 43

Conread position: 10-302
Cow position: chr9:11439192-11439500 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 203
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 12, 0

Conread position: 13-302
Cow position: chr9:50727727-50728017 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 190
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 9, 59

Conread position: 13-517
Cow position: chr9:13117091-13117616 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 349
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 9, 180

Conread position: 13-585
Cow position: chr9:40131414-40130800 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 402
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 13, 20

Conread position: 14-437
Cow position: chr9:48056657-48056233 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 283
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 107, 137

Conread position: 14-447
Cow position: chr9:60821880-60821430 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 295
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 9, 56

Conread position: 15-318
Cow position: chr9:27689983-27690292 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 227
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 98, 89

Conread position: 16-299
Cow position: chr9:64054945-64054651 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 196
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 92, 230

Conread position: 17-291
Cow position: chr9:20900475-20900186 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 188
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 101, 0

Conread position: 17-302
Cow position: chr9:1983863-1983573 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 188
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 94, 169

Conread position: 17-394
Cow position: chr9:6395440-6395035 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 274
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 52, 69

Conread position: 22-441
Cow position: chr9:5704043-5703627 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 279
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 142, 155

Conread position: 28-394
Cow position: chr9:6705032-6705425 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 260
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 93, 237

Conread position: 42-458
Cow position: chr9:39271765-39271341 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 272
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 64, 203

Conread position: 42-458
Cow position: chr9:57678235-57677790 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 343

Conread position: 43-555
Cow position: chr9:50062460-50063011 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 361
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 79, 125

Conread position: 43-579
Cow position: chr9:32985848-32985292 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 360
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 64, 313

Conread position: 44-302
Cow position: chr9:49151152-49151422 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 185
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 77, 19

Conread position: 58-318
Cow position: chr9:63332863-63332587 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 193
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 63, 19

Conread position: 99-288
Cow position: chr9:34132517-34132703 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 137
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 184, 17

Conread position: 118-579
Cow position: chr9:49619296-49618814 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 319
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 109, 17

Conread position: 120-579
Cow position: chr9:35023341-35022874 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 300
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 107, 65

Conread position: 125-451
Cow position: chr9:19536657-19536997 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 220
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 92, 128

Conread position: 129-330
Cow position: chr9:26190033-26189832 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 143
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 93, 173

Conread position: 130-568
Cow position: chr9:58911653-58912095 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 285
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 87, 111

Conread position: 156-579
Cow position: chr9:20506451-20506013 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 297
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 61, 214

Conread position: 184-462
Cow position: chr9:39032692-39032399 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 197
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 5, 188

Conread position: 344-579
Cow position: chr9:48851049-48851285 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 163
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 93, 12

Show alignments to all cow chromosomes.