Cow genome map
| Conread name: | Ss1.1-rspc028_p1.5.5 |
| Conread position: | 2-128 |
| Cow position: | chr17:23101071-23101198 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 2-150 |
| Cow position: | chr17:21003683-21003827 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 2-150 |
| Cow position: | chr17:32471634-32471782 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 142, 136 |
| Conread position: | 3-151 |
| Cow position: | chr17:33933597-33933748 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 4-146 |
| Cow position: | chr17:18848013-18848155 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-153 |
| Cow position: | chr17:23516797-23516946 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-141 |
| Cow position: | chr17:11306353-11306217 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-146 |
| Cow position: | chr17:15340608-15340751 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 7-124 |
| Cow position: | chr17:18109407-18109524 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-128 |
| Cow position: | chr17:1634350-1634471 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 94 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-130 |
| Cow position: | chr17:25128211-25128334 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-131 |
| Cow position: | chr17:3153433-3153556 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 7-131 |
| Cow position: | chr17:5768046-5767925 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 7-131 |
| Cow position: | chr17:30728646-30728522 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-131 |
| Cow position: | chr17:39606572-39606448 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-131 |
| Cow position: | chr17:39736316-39736194 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 7-132 |
| Cow position: | chr17:9932158-9932283 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-132 |
| Cow position: | chr17:12536323-12536448 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 97 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-132 |
| Cow position: | chr17:15102752-15102877 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-132 |
| Cow position: | chr17:24554138-24554014 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 7-136 |
| Cow position: | chr17:5422927-5423056 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-139 |
| Cow position: | chr17:17044191-17044323 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 123, 9 |
| Conread position: | 7-140 |
| Cow position: | chr17:7810613-7810746 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-144 |
| Cow position: | chr17:21039699-21039562 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-144 |
| Cow position: | chr17:26575081-26575223 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 51, 133 |
| Conread position: | 7-145 |
| Cow position: | chr17:21757999-21758137 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-145 |
| Cow position: | chr17:25901342-25901204 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-146 |
| Cow position: | chr17:9824811-9824670 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 7-148 |
| Cow position: | chr17:24587766-24587625 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-149 |
| Cow position: | chr17:31037235-31037380 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 7-150 |
| Cow position: | chr17:3388965-3388825 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 7-150 |
| Cow position: | chr17:18108946-18109084 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 7-150 |
| Cow position: | chr17:18473304-18473164 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 7-150 |
| Cow position: | chr17:21114812-21114956 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 7-150 |
| Cow position: | chr17:29995294-29995437 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-150 |
| Cow position: | chr17:33288515-33288658 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-150 |
| Cow position: | chr17:37340889-37341039 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 7-151 |
| Cow position: | chr17:21325474-21325331 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 7-151 |
| Cow position: | chr17:32138282-32138424 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 7-151 |
| Cow position: | chr17:32989618-32989475 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 7-151 |
| Cow position: | chr17:32993482-32993625 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 7-151 |
| Cow position: | chr17:36330817-36330959 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 7-151 |
| Cow position: | chr17:40331906-40331766 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 7-151 |
| Cow position: | chr17:43315147-43315289 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 138, 43 |
| Conread position: | 7-153 |
| Cow position: | chr17:1040886-1040742 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 7-153 |
| Cow position: | chr17:4105852-4105997 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 7-153 |
| Cow position: | chr17:4121588-4121733 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 7-153 |
| Cow position: | chr17:6318725-6318871 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 127, 109 |
| Conread position: | 7-153 |
| Cow position: | chr17:22016947-22017091 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 127, 36 |
| Conread position: | 7-153 |
| Cow position: | chr17:25473138-25473284 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-155 |
| Cow position: | chr17:32332949-32333098 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 7-179 |
| Cow position: | chr17:42150533-42150367 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 8-132 |
| Cow position: | chr17:17035090-17034966 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-132 |
| Cow position: | chr17:29075943-29076066 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 8-147 |
| Cow position: | chr17:12591315-12591171 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 8-149 |
| Cow position: | chr17:25800742-25800880 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 75, 19 |
| Conread position: | 8-153 |
| Cow position: | chr17:12325624-12325767 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 9-139 |
| Cow position: | chr17:24824382-24824252 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-150 |
| Cow position: | chr17:3577677-3577537 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 136, 8 |
| Conread position: | 9-151 |
| Cow position: | chr17:11368710-11368851 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 9-159 |
| Cow position: | chr17:11478909-11478757 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 23-185 |
| Cow position: | chr17:32192727-32192888 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 118, 111 |
Show alignments to all cow chromosomes.