Cow genome map
| Conread name: | Ss1.1-rspc028_p1.5.5 |
| Conread position: | 2-148 |
| Cow position: | chr18:43796881-43797024 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 7, 129 |
| Conread position: | 2-153 |
| Cow position: | chr18:9365994-9365839 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 4-123 |
| Cow position: | chr18:50632371-50632490 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-146 |
| Cow position: | chr18:34834563-34834426 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 4-150 |
| Cow position: | chr18:9176970-9176829 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 5-147 |
| Cow position: | chr18:18592543-18592402 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 7-131 |
| Cow position: | chr18:16378991-16378867 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-132 |
| Cow position: | chr18:2773324-2773449 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-132 |
| Cow position: | chr18:2776827-2776952 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-132 |
| Cow position: | chr18:20641428-20641553 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-132 |
| Cow position: | chr18:28923779-28923904 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-132 |
| Cow position: | chr18:28930568-28930693 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-132 |
| Cow position: | chr18:52414035-52413908 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 7-133 |
| Cow position: | chr18:44917825-44917699 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-135 |
| Cow position: | chr18:21081824-21081951 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 7-136 |
| Cow position: | chr18:11685050-11684921 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-138 |
| Cow position: | chr18:38937889-38937759 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 7-140 |
| Cow position: | chr18:17390926-17391058 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 7-140 |
| Cow position: | chr18:23630539-23630669 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 7-140 |
| Cow position: | chr18:33159010-33158878 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 7-140 |
| Cow position: | chr18:49324368-49324499 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 125, 61 |
| Conread position: | 7-143 |
| Cow position: | chr18:25006425-25006560 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 7-145 |
| Cow position: | chr18:47547919-47548056 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 7-147 |
| Cow position: | chr18:37002700-37002560 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-147 |
| Cow position: | chr18:49038530-49038391 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 7-148 |
| Cow position: | chr18:10977143-10977283 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 7-148 |
| Cow position: | chr18:32189439-32189578 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 7-149 |
| Cow position: | chr18:30794494-30794357 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 7-150 |
| Cow position: | chr18:2146511-2146654 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-150 |
| Cow position: | chr18:11691341-11691483 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 7-151 |
| Cow position: | chr18:1571169-1571311 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 7-151 |
| Cow position: | chr18:1954521-1954665 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-151 |
| Cow position: | chr18:47512074-47511930 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-151 |
| Cow position: | chr18:49100300-49100444 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-152 |
| Cow position: | chr18:23505399-23505254 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-153 |
| Cow position: | chr18:22568998-22569144 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 141, 129 |
| Conread position: | 7-153 |
| Cow position: | chr18:33299972-33299824 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 7-153 |
| Cow position: | chr18:48713619-48713472 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 82, 76 |
| Conread position: | 7-158 |
| Cow position: | chr18:4884452-4884600 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 54, 15 |
| Conread position: | 7-158 |
| Cow position: | chr18:35535078-35535231 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 7-163 |
| Cow position: | chr18:53038901-53038742 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 8-132 |
| Cow position: | chr18:8300084-8299962 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 8-132 |
| Cow position: | chr18:52649280-52649404 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-132 |
| Cow position: | chr18:31082282-31082405 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-145 |
| Cow position: | chr18:44483711-44483843 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-150 |
| Cow position: | chr18:23766347-23766485 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 19-150 |
| Cow position: | chr18:20126361-20126231 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 118, 42 |
| Conread position: | 33-130 |
| Cow position: | chr18:15880802-15880899 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 82 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.