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Cow genome map

           
Conread name:
           
Ss1.1-rspl03_j14.5
        

               
Conread position:
               
586-904
               

               
Cow position:
               
chr6:13565363-13565043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
45, 23
               

               
Conread position:
               
589-904
               

               
Cow position:
               
chr6:24536252-24536583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
96, 155
               

               
Conread position:
               
591-894
               

               
Cow position:
               
chr6:29210750-29210466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
7, 103
               

               
Conread position:
               
591-904
               

               
Cow position:
               
chr6:15937582-15937892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
119, 33
               

               
Conread position:
               
592-904
               

               
Cow position:
               
chr6:52478138-52478455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 275
               

               
Conread position:
               
592-904
               

               
Cow position:
               
chr6:67643418-67643732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 52
               

               
Conread position:
               
593-902
               

               
Cow position:
               
chr6:15243105-15242793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
113, 36
               

               
Conread position:
               
594-904
               

               
Cow position:
               
chr6:24110558-24110240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
15, 164
               

               
Conread position:
               
598-859
               

               
Cow position:
               
chr6:29775883-29775626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
151, 114
               

               
Conread position:
               
601-782
               

               
Cow position:
               
chr6:35341925-35342099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
601-892
               

               
Cow position:
               
chr6:47305605-47305307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
14, 35
               

               
Conread position:
               
603-902
               

               
Cow position:
               
chr6:40050340-40050030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
39, 107
               

               
Conread position:
               
605-904
               

               
Cow position:
               
chr6:2078557-2078861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 103
               

               
Conread position:
               
605-904
               

               
Cow position:
               
chr6:44194298-44194583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
247, 50
               

               
Conread position:
               
605-904
               

               
Cow position:
               
chr6:53841242-53841544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
13, 243
               

               
Conread position:
               
606-887
               

               
Cow position:
               
chr6:47540582-47540871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
24, 137
               

               
Conread position:
               
606-887
               

               
Cow position:
               
chr6:63066094-63065800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
606-896
               

               
Cow position:
               
chr6:15300583-15300859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
607-801
               

               
Cow position:
               
chr6:62805902-62805704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
23, 136
               

               
Conread position:
               
607-830
               

               
Cow position:
               
chr6:12761544-12761312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
16, 61
               

               
Conread position:
               
607-882
               

               
Cow position:
               
chr6:53546285-53546016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
607-892
               

               
Cow position:
               
chr6:693889-694180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 109
               

               
Conread position:
               
607-895
               

               
Cow position:
               
chr6:26728287-26728558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
23, 50
               

               
Conread position:
               
607-901
               

               
Cow position:
               
chr6:21456419-21456726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
607-902
               

               
Cow position:
               
chr6:7119373-7119659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
24, 100
               

               
Conread position:
               
608-793
               

               
Cow position:
               
chr6:45633742-45633913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
608-801
               

               
Cow position:
               
chr6:26408246-26408443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
22, 140
               

               
Conread position:
               
608-818
               

               
Cow position:
               
chr6:15058632-15058421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
32, 95
               

               
Conread position:
               
608-835
               

               
Cow position:
               
chr6:42483671-42483443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
14, 120
               

               
Conread position:
               
608-902
               

               
Cow position:
               
chr6:43134684-43134977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
23, 41
               

               
Conread position:
               
609-824
               

               
Cow position:
               
chr6:67574644-67574427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
91, 132
               

               
Conread position:
               
609-863
               

               
Cow position:
               
chr6:42035024-42034773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
125, 99
               

               
Conread position:
               
609-887
               

               
Cow position:
               
chr6:57089458-57089172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
609-887
               

               
Cow position:
               
chr6:62056865-62056588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
77, 81
               

               
Conread position:
               
609-897
               

               
Cow position:
               
chr6:6063037-6063324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
21, 133
               

               
Conread position:
               
609-902
               

               
Cow position:
               
chr6:17313993-17313695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
21, 151
               

               
Conread position:
               
609-902
               

               
Cow position:
               
chr6:17557630-17557343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
21, 86
               

               
Conread position:
               
609-902
               

               
Cow position:
               
chr6:32866967-32867252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 69
               

               
Conread position:
               
609-902
               

               
Cow position:
               
chr6:35726346-35726057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
22, 92
               

               
Conread position:
               
609-904
               

               
Cow position:
               
chr6:14913978-14914282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
22, 65
               

               
Conread position:
               
609-904
               

               
Cow position:
               
chr6:35436241-35435951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
217, 76
               

               
Conread position:
               
609-904
               

               
Cow position:
               
chr6:56850271-56849971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
125, 107
               

               
Conread position:
               
609-920
               

               
Cow position:
               
chr6:611797-611494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
171, 105
               

               
Conread position:
               
610-794
               

               
Cow position:
               
chr6:19936313-19936501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
15, 133
               

               
Conread position:
               
610-794
               

               
Cow position:
               
chr6:37994457-37994277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
168, 82
               

               
Conread position:
               
610-808
               

               
Cow position:
               
chr6:43906425-43906628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
23, 134
               

               
Conread position:
               
610-818
               

               
Cow position:
               
chr6:21350778-21350988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
85, 155
               

               
Conread position:
               
610-818
               

               
Cow position:
               
chr6:53792224-53792424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
26, 46
               

               
Conread position:
               
610-823
               

               
Cow position:
               
chr6:41657519-41657307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
20, 105
               

               
Conread position:
               
610-824
               

               
Cow position:
               
chr6:410967-411175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
21, 34
               

               
Conread position:
               
610-825
               

               
Cow position:
               
chr6:56716061-56715855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
155, 74
               

               
Conread position:
               
610-830
               

               
Cow position:
               
chr6:21183968-21184190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
21, 133
               

               
Conread position:
               
610-832
               

               
Cow position:
               
chr6:16091150-16090934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
610-855
               

               
Cow position:
               
chr6:57079680-57079432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
20, 245
               

               
Conread position:
               
610-860
               

               
Cow position:
               
chr6:17997064-17997317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
81, 193
               

               
Conread position:
               
610-866
               

               
Cow position:
               
chr6:36808948-36809210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
20, 132
               

               
Conread position:
               
610-866
               

               
Cow position:
               
chr6:58459968-58459718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
610-884
               

               
Cow position:
               
chr6:21293240-21293518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
27, 94
               

               
Conread position:
               
610-887
               

               
Cow position:
               
chr6:68685792-68685530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
610-902
               

               
Cow position:
               
chr6:17414196-17414488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
20, 46
               

               
Conread position:
               
610-902
               

               
Cow position:
               
chr6:27239751-27240045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
99, 137
               

               
Conread position:
               
610-902
               

               
Cow position:
               
chr6:33510044-33509751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
21, 139
               

               
Conread position:
               
610-902
               

               
Cow position:
               
chr6:60468484-60468198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
250, 39
               

               
Conread position:
               
610-902
               

               
Cow position:
               
chr6:62670125-62669830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
26, 129
               

               
Conread position:
               
610-903
               

               
Cow position:
               
chr6:5330667-5330370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
90, 130
               

               
Conread position:
               
610-903
               

               
Cow position:
               
chr6:38640486-38640191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
21, 48
               

               
Conread position:
               
610-904
               

               
Cow position:
               
chr6:4469021-4468727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
19, 119
               

               
Conread position:
               
610-904
               

               
Cow position:
               
chr6:10225397-10225680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
92, 171
               

               
Conread position:
               
610-904
               

               
Cow position:
               
chr6:11192225-11192508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
20, 131
               

               
Conread position:
               
610-904
               

               
Cow position:
               
chr6:18954837-18955106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
16, 48
               

               
Conread position:
               
610-904
               

               
Cow position:
               
chr6:19045881-19045585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
86, 134
               

               
Conread position:
               
610-904
               

               
Cow position:
               
chr6:24468146-24468432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
610-904
               

               
Cow position:
               
chr6:32122152-32121864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
24, 108
               

               
Conread position:
               
610-904
               

               
Cow position:
               
chr6:35180999-35181299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
19, 139
               

               
Conread position:
               
610-904
               

               
Cow position:
               
chr6:46558307-46558013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
139, 98
               

               
Conread position:
               
610-904
               

               
Cow position:
               
chr6:51529934-51530227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
24, 50
               

               
Conread position:
               
610-904
               

               
Cow position:
               
chr6:54365077-54365371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
100, 21
               

               
Conread position:
               
610-904
               

               
Cow position:
               
chr6:59602960-59603252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
21, 81
               

               
Conread position:
               
610-929
               

               
Cow position:
               
chr6:3351283-3350950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 100
               

               
Conread position:
               
611-764
               

               
Cow position:
               
chr6:43770648-43770800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
17, 99
               

               
Conread position:
               
611-804
               

               
Cow position:
               
chr6:28561915-28562110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
19, 123
               

               
Conread position:
               
611-807
               

               
Cow position:
               
chr6:59297297-59297108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
611-811
               

               
Cow position:
               
chr6:14383928-14383727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
83, 134
               

               
Conread position:
               
611-812
               

               
Cow position:
               
chr6:53711656-53711453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
611-840
               

               
Cow position:
               
chr6:36570718-36570486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
89, 191
               

               
Conread position:
               
611-902
               

               
Cow position:
               
chr6:12965107-12964814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
19, 43
               

               
Conread position:
               
611-902
               

               
Cow position:
               
chr6:55417279-55417566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
18, 90
               

               
Conread position:
               
611-903
               

               
Cow position:
               
chr6:22849999-22850290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
19, 132
               

               
Conread position:
               
611-904
               

               
Cow position:
               
chr6:7189879-7190160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
260, 35
               

               
Conread position:
               
611-904
               

               
Cow position:
               
chr6:13040707-13040410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
20, 62
               

               
Conread position:
               
611-904
               

               
Cow position:
               
chr6:15243515-15243213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
19, 31
               

               
Conread position:
               
611-904
               

               
Cow position:
               
chr6:21231763-21231484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
95, 25
               

               
Conread position:
               
611-904
               

               
Cow position:
               
chr6:31535322-31535612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
244, 25
               

               
Conread position:
               
611-904
               

               
Cow position:
               
chr6:47520309-47520009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
611-904
               

               
Cow position:
               
chr6:65264299-65264579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
254, 74
               

               
Conread position:
               
612-782
               

               
Cow position:
               
chr6:54406554-54406719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
612-788
               

               
Cow position:
               
chr6:4699956-4699782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
612-810
               

               
Cow position:
               
chr6:47151070-47150872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
18, 88
               

               
Conread position:
               
612-835
               

               
Cow position:
               
chr6:21004932-21004702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
612-835
               

               
Cow position:
               
chr6:60850949-60850728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
612-889
               

               
Cow position:
               
chr6:35318882-35319158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
98, 128
               

               
Conread position:
               
612-894
               

               
Cow position:
               
chr6:50577766-50577493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
228, 43
               

               
Conread position:
               
612-902
               

               
Cow position:
               
chr6:19293049-19292760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
224, 105
               

               
Conread position:
               
612-902
               

               
Cow position:
               
chr6:44867294-44867579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
13, 63
               

               
Conread position:
               
612-903
               

               
Cow position:
               
chr6:13687568-13687853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 13
               

               
Conread position:
               
612-904
               

               
Cow position:
               
chr6:12338240-12337948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
82, 25
               

               
Conread position:
               
612-904
               

               
Cow position:
               
chr6:23401744-23402031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
612-904
               

               
Cow position:
               
chr6:61169013-61168728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
65, 28
               

               
Conread position:
               
612-904
               

               
Cow position:
               
chr6:67187931-67187641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
17, 45
               

               
Conread position:
               
613-812
               

               
Cow position:
               
chr6:16411865-16411662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
16, 124
               

               
Conread position:
               
613-859
               

               
Cow position:
               
chr6:54831728-54831480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
96, 128
               

               
Conread position:
               
613-897
               

               
Cow position:
               
chr6:54854501-54854208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
17, 129
               

               
Conread position:
               
613-903
               

               
Cow position:
               
chr6:64432184-64431895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
17, 73
               

               
Conread position:
               
613-926
               

               
Cow position:
               
chr6:67451122-67451437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
95, 31
               

               
Conread position:
               
614-783
               

               
Cow position:
               
chr6:7291560-7291395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
614-783
               

               
Cow position:
               
chr6:34463341-34463508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
26, 86
               

               
Conread position:
               
614-830
               

               
Cow position:
               
chr6:5601949-5601735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
58, 150
               

               
Conread position:
               
614-832
               

               
Cow position:
               
chr6:23938300-23938091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
614-882
               

               
Cow position:
               
chr6:13653595-13653331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
34, 165
               

               
Conread position:
               
614-898
               

               
Cow position:
               
chr6:55282043-55282322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 33
               

               
Conread position:
               
614-898
               

               
Cow position:
               
chr6:58370999-58370719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
16, 87
               

               
Conread position:
               
614-902
               

               
Cow position:
               
chr6:23353807-23353514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
16, 121
               

               
Conread position:
               
614-902
               

               
Cow position:
               
chr6:25614841-25615143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
614-902
               

               
Cow position:
               
chr6:63251671-63251960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
16, 133
               

               
Conread position:
               
614-904
               

               
Cow position:
               
chr6:2547515-2547205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
23, 112
               

               
Conread position:
               
614-904
               

               
Cow position:
               
chr6:5095291-5095588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
15, 43
               

               
Conread position:
               
614-905
               

               
Cow position:
               
chr6:6965146-6965437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
80, 51
               

               
Conread position:
               
615-800
               

               
Cow position:
               
chr6:58173590-58173412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
615-812
               

               
Cow position:
               
chr6:45159806-45160007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
615-835
               

               
Cow position:
               
chr6:21535288-21535065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
615-853
               

               
Cow position:
               
chr6:54127574-54127803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
615-858
               

               
Cow position:
               
chr6:58304662-58304420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
14, 47
               

               
Conread position:
               
615-880
               

               
Cow position:
               
chr6:58725615-58725358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
615-897
               

               
Cow position:
               
chr6:6194854-6195145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
96, 126
               

               
Conread position:
               
615-898
               

               
Cow position:
               
chr6:36196454-36196177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
27, 10
               

               
Conread position:
               
615-901
               

               
Cow position:
               
chr6:51581003-51581291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 127
               

               
Conread position:
               
615-902
               

               
Cow position:
               
chr6:323052-323341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
10, 116
               

               
Conread position:
               
615-902
               

               
Cow position:
               
chr6:15446942-15447242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
615-902
               

               
Cow position:
               
chr6:24339538-24339244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
19, 116
               

               
Conread position:
               
615-904
               

               
Cow position:
               
chr6:18447267-18447550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
95, 126
               

               
Conread position:
               
615-904
               

               
Cow position:
               
chr6:46466066-46465782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
616-820
               

               
Cow position:
               
chr6:24514286-24514503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
616-827
               

               
Cow position:
               
chr6:30825529-30825730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
14, 28
               

               
Conread position:
               
616-887
               

               
Cow position:
               
chr6:18903790-18904077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
84, 215
               

               
Conread position:
               
616-892
               

               
Cow position:
               
chr6:49437578-49437303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
101, 39
               

               
Conread position:
               
616-898
               

               
Cow position:
               
chr6:53460323-53460607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
14, 91
               

               
Conread position:
               
616-904
               

               
Cow position:
               
chr6:1769947-1770239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
97, 108
               

               
Conread position:
               
616-904
               

               
Cow position:
               
chr6:22985615-22985899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
233, 91
               

               
Conread position:
               
616-904
               

               
Cow position:
               
chr6:60273763-60274053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
14, 27
               

               
Conread position:
               
617-771
               

               
Cow position:
               
chr6:66058463-66058616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
617-799
               

               
Cow position:
               
chr6:38033104-38032920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
617-835
               

               
Cow position:
               
chr6:1475583-1475373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
617-899
               

               
Cow position:
               
chr6:43345192-43345479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
12, 137
               

               
Conread position:
               
617-904
               

               
Cow position:
               
chr6:32287877-32287597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
123, 91
               

               
Conread position:
               
617-905
               

               
Cow position:
               
chr6:6060323-6060609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
20, 43
               

               
Conread position:
               
618-801
               

               
Cow position:
               
chr6:53811831-53811644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
618-818
               

               
Cow position:
               
chr6:22876681-22876886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
11, 131
               

               
Conread position:
               
618-834
               

               
Cow position:
               
chr6:66259984-66259758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
618-835
               

               
Cow position:
               
chr6:55548287-55548506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
11, 61
               

               
Conread position:
               
618-847
               

               
Cow position:
               
chr6:12623753-12623531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
618-874
               

               
Cow position:
               
chr6:32453634-32453375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
44, 252
               

               
Conread position:
               
618-888
               

               
Cow position:
               
chr6:53024566-53024831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
239, 86
               

               
Conread position:
               
618-892
               

               
Cow position:
               
chr6:7539820-7539547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
11, 145
               

               
Conread position:
               
618-895
               

               
Cow position:
               
chr6:143132-143403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
13, 91
               

               
Conread position:
               
618-895
               

               
Cow position:
               
chr6:29485327-29485054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 13
               

               
Conread position:
               
618-898
               

               
Cow position:
               
chr6:5844921-5845207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
12, 123
               

               
Conread position:
               
618-902
               

               
Cow position:
               
chr6:60784118-60783830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
11, 121
               

               
Conread position:
               
618-904
               

               
Cow position:
               
chr6:10176052-10176337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
11, 74
               

               
Conread position:
               
618-904
               

               
Cow position:
               
chr6:40032426-40032152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
11, 51
               

               
Conread position:
               
619-807
               

               
Cow position:
               
chr6:32006211-32006399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
11, 90
               

               
Conread position:
               
619-887
               

               
Cow position:
               
chr6:46282745-46283032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
619-902
               

               
Cow position:
               
chr6:8966332-8966052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
230, 82
               

               
Conread position:
               
619-903
               

               
Cow position:
               
chr6:54490502-54490775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
217, 87
               

               
Conread position:
               
619-904
               

               
Cow position:
               
chr6:120481-120204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
235, 36
               

               
Conread position:
               
619-904
               

               
Cow position:
               
chr6:8637526-8637234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
31, 85
               

               
Conread position:
               
619-904
               

               
Cow position:
               
chr6:38641739-38641453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
30, 163
               

               
Conread position:
               
619-904
               

               
Cow position:
               
chr6:44078759-44078476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
92, 161
               

               
Conread position:
               
620-765
               

               
Cow position:
               
chr6:68602485-68602341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
620-777
               

               
Cow position:
               
chr6:1945202-1945041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
620-823
               

               
Cow position:
               
chr6:66979114-66978909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
28, 130
               

               
Conread position:
               
620-887
               

               
Cow position:
               
chr6:48097360-48097626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 35
               

               
Conread position:
               
620-902
               

               
Cow position:
               
chr6:581496-581783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
10, 194
               

               
Conread position:
               
620-902
               

               
Cow position:
               
chr6:60143956-60144238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 94
               

               
Conread position:
               
620-904
               

               
Cow position:
               
chr6:23696237-23695953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
225, 36
               

               
Conread position:
               
621-825
               

               
Cow position:
               
chr6:3937029-3936822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
85, 174
               

               
Conread position:
               
621-836
               

               
Cow position:
               
chr6:41226602-41226803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
12, 38
               

               
Conread position:
               
621-862
               

               
Cow position:
               
chr6:21470190-21470427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
621-886
               

               
Cow position:
               
chr6:30024119-30023870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
621-916
               

               
Cow position:
               
chr6:67451422-67451697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
234, 87
               

               
Conread position:
               
622-903
               

               
Cow position:
               
chr6:17068414-17068689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 33
               

               
Conread position:
               
623-825
               

               
Cow position:
               
chr6:36537123-36537323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
623-887
               

               
Cow position:
               
chr6:50504697-50504429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 93
               

               
Conread position:
               
623-902
               

               
Cow position:
               
chr6:46859928-46860207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 64
               

               
Conread position:
               
624-820
               

               
Cow position:
               
chr6:25772980-25773173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
83, 62
               

               
Conread position:
               
625-780
               

               
Cow position:
               
chr6:21346915-21347068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
625-798
               

               
Cow position:
               
chr6:39415062-39414887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
72, 17
               

               
Conread position:
               
625-801
               

               
Cow position:
               
chr6:34423222-34423397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
625-813
               

               
Cow position:
               
chr6:35984896-35985087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
75, 110
               

               
Conread position:
               
625-813
               

               
Cow position:
               
chr6:60186413-60186613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
625-818
               

               
Cow position:
               
chr6:19563241-19563439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
75, 112
               

               
Conread position:
               
625-821
               

               
Cow position:
               
chr6:36225348-36225150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
85, 116
               

               
Conread position:
               
625-835
               

               
Cow position:
               
chr6:50883440-50883650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
171, 74
               

               
Conread position:
               
625-836
               

               
Cow position:
               
chr6:51933777-51933581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
625-848
               

               
Cow position:
               
chr6:1866969-1866747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
40, 86
               

               
Conread position:
               
625-860
               

               
Cow position:
               
chr6:66839431-66839199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
229, 89
               

               
Conread position:
               
625-864
               

               
Cow position:
               
chr6:55296854-55297094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
84, 129
               

               
Conread position:
               
625-867
               

               
Cow position:
               
chr6:1941596-1941836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
149, 83
               

               
Conread position:
               
625-867
               

               
Cow position:
               
chr6:57320360-57320588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
625-901
               

               
Cow position:
               
chr6:66570663-66570399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
229, 26
               

               
Conread position:
               
625-902
               

               
Cow position:
               
chr6:32126290-32126023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
625-904
               

               
Cow position:
               
chr6:5609204-5609487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 189
               

               
Conread position:
               
625-904
               

               
Cow position:
               
chr6:7128166-7128447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 106
               

               
Conread position:
               
625-904
               

               
Cow position:
               
chr6:37395164-37395449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
10, 83
               

               
Conread position:
               
625-904
               

               
Cow position:
               
chr6:38610212-38609928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
106, 73
               

               
Conread position:
               
625-904
               

               
Cow position:
               
chr6:47575129-47574865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
625-904
               

               
Cow position:
               
chr6:57545990-57546261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
8, 31
               

               
Conread position:
               
625-906
               

               
Cow position:
               
chr6:10105745-10106026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 30
               

               
Conread position:
               
625-924
               

               
Cow position:
               
chr6:1429872-1429581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
241, 61
               

               
Conread position:
               
626-825
               

               
Cow position:
               
chr6:21083304-21083503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
626-860
               

               
Cow position:
               
chr6:61110019-61109790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
626-863
               

               
Cow position:
               
chr6:67069578-67069815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
134, 29
               

               
Conread position:
               
626-867
               

               
Cow position:
               
chr6:12928377-12928142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
101, 73
               

               
Conread position:
               
626-887
               

               
Cow position:
               
chr6:41014737-41015001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
75, 230
               

               
Conread position:
               
626-896
               

               
Cow position:
               
chr6:60265931-60266215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
70, 216
               

               
Conread position:
               
626-898
               

               
Cow position:
               
chr6:38771508-38771251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
242, 73
               

               
Conread position:
               
626-904
               

               
Cow position:
               
chr6:9302486-9302756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
47, 51
               

               
Conread position:
               
626-904
               

               
Cow position:
               
chr6:67951194-67950911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
70, 27
               

               
Conread position:
               
627-904
               

               
Cow position:
               
chr6:19696045-19695766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
73, 173
               

               
Conread position:
               
628-815
               

               
Cow position:
               
chr6:40682434-40682615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
628-902
               

               
Cow position:
               
chr6:16102957-16103235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
83, 100
               

               
Conread position:
               
629-789
               

               
Cow position:
               
chr6:2014359-2014202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
69, 58
               

               
Conread position:
               
629-814
               

               
Cow position:
               
chr6:63168529-63168715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
92, 157
               

               
Conread position:
               
629-886
               

               
Cow position:
               
chr6:24031597-24031349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
77, 87
               

               
Conread position:
               
629-898
               

               
Cow position:
               
chr6:36203055-36202785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 156
               

               
Conread position:
               
629-902
               

               
Cow position:
               
chr6:19264267-19264535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 22
               

               
Conread position:
               
629-902
               

               
Cow position:
               
chr6:37149416-37149149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
236, 15
               

               
Conread position:
               
629-902
               

               
Cow position:
               
chr6:49398395-49398653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
232, 69
               

               
Conread position:
               
629-904
               

               
Cow position:
               
chr6:24781317-24781597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
71, 128
               

               
Conread position:
               
629-904
               

               
Cow position:
               
chr6:32268653-32268917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
81, 167
               

               
Conread position:
               
629-904
               

               
Cow position:
               
chr6:38207251-38207532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
6, 32
               

               
Conread position:
               
630-904
               

               
Cow position:
               
chr6:41376003-41375729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
97, 109
               

               
Conread position:
               
631-793
               

               
Cow position:
               
chr6:63182517-63182358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
631-904
               

               
Cow position:
               
chr6:15305803-15305534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
75, 112
               

               
Conread position:
               
632-788
               

               
Cow position:
               
chr6:8726908-8726752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
74, 85
               

               
Conread position:
               
632-866
               

               
Cow position:
               
chr6:6168918-6168686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
138, 112
               

               
Conread position:
               
632-893
               

               
Cow position:
               
chr6:39358112-39358378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
175, 76
               

               
Conread position:
               
632-894
               

               
Cow position:
               
chr6:17794524-17794792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
39, 228
               

               
Conread position:
               
632-901
               

               
Cow position:
               
chr6:38853425-38853693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 222
               

               
Conread position:
               
632-902
               

               
Cow position:
               
chr6:21061660-21061926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
174, 58
               

               
Conread position:
               
632-902
               

               
Cow position:
               
chr6:65871262-65870991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
207, 75
               

               
Conread position:
               
632-905
               

               
Cow position:
               
chr6:19446484-19446211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
53, 157
               

               
Conread position:
               
633-887
               

               
Cow position:
               
chr6:61523975-61524231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
78, 7
               

               
Conread position:
               
633-904
               

               
Cow position:
               
chr6:4383704-4383445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
635-801
               

               
Cow position:
               
chr6:44543919-44544087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
75, 99
               

               
Conread position:
               
635-898
               

               
Cow position:
               
chr6:10039954-10039687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
74, 106
               

               
Conread position:
               
635-898
               

               
Cow position:
               
chr6:19996843-19996582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
73, 91
               

               
Conread position:
               
635-903
               

               
Cow position:
               
chr6:18117823-18118092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 79
               

               
Conread position:
               
635-904
               

               
Cow position:
               
chr6:11246996-11246722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
65, 98
               

               
Conread position:
               
635-904
               

               
Cow position:
               
chr6:16700482-16700224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
635-924
               

               
Cow position:
               
chr6:13367510-13367221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
93, 64
               

               
Conread position:
               
636-783
               

               
Cow position:
               
chr6:2758009-2757864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
636-868
               

               
Cow position:
               
chr6:48379384-48379621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
74, 105
               

               
Conread position:
               
636-898
               

               
Cow position:
               
chr6:39093972-39093701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
113, 49
               

               
Conread position:
               
636-902
               

               
Cow position:
               
chr6:60118369-60118111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
636-902
               

               
Cow position:
               
chr6:66131546-66131267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
57, 177
               

               
Conread position:
               
636-904
               

               
Cow position:
               
chr6:54133038-54132770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
75, 43
               

               
Conread position:
               
636-904
               

               
Cow position:
               
chr6:60517065-60516786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
62, 158
               

               
Conread position:
               
637-898
               

               
Cow position:
               
chr6:2585167-2584906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
91, 77
               

               
Conread position:
               
637-904
               

               
Cow position:
               
chr6:5113821-5114086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
63, 142
               

               
Conread position:
               
637-904
               

               
Cow position:
               
chr6:68816396-68816125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
59, 11
               

               
Conread position:
               
638-816
               

               
Cow position:
               
chr6:24905847-24905674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
638-896
               

               
Cow position:
               
chr6:45690393-45690636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
638-902
               

               
Cow position:
               
chr6:12091761-12092032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
47, 107
               

               
Conread position:
               
638-902
               

               
Cow position:
               
chr6:51835623-51835359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
89, 49
               

               
Conread position:
               
639-904
               

               
Cow position:
               
chr6:63720416-63720154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
210, 60
               

               
Conread position:
               
640-898
               

               
Cow position:
               
chr6:34119140-34119390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
224, 73
               

               
Conread position:
               
641-847
               

               
Cow position:
               
chr6:1870975-1871182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
44, 77
               

               
Conread position:
               
641-902
               

               
Cow position:
               
chr6:60740232-60739977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
643-896
               

               
Cow position:
               
chr6:9718697-9718953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
106, 56
               

               
Conread position:
               
644-895
               

               
Cow position:
               
chr6:35990020-35990267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
149, 63
               

               
Conread position:
               
644-904
               

               
Cow position:
               
chr6:35842879-35842614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
59, 96
               

               
Conread position:
               
646-774
               

               
Cow position:
               
chr6:53235436-53235564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
54, 69
               

               
Conread position:
               
647-891
               

               
Cow position:
               
chr6:36920759-36921003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
59, 85
               

               
Conread position:
               
653-902
               

               
Cow position:
               
chr6:26915538-26915291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
222, 131
               

               
Conread position:
               
660-902
               

               
Cow position:
               
chr6:61269514-61269271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
71, 56
               

               
Conread position:
               
661-904
               

               
Cow position:
               
chr6:31078666-31078913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
55, 71
               

               
Conread position:
               
662-898
               

               
Cow position:
               
chr6:57571679-57571443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
203, 35
               

               
Conread position:
               
662-904
               

               
Cow position:
               
chr6:528089-528321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
9, 24
               

               
Conread position:
               
668-902
               

               
Cow position:
               
chr6:20097764-20098003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
165, 0
               

               
Conread position:
               
677-904
               

               
Cow position:
               
chr6:48112382-48112157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
683-880
               

               
Cow position:
               
chr6:4702642-4702842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
38, 115
               

               
Conread position:
               
683-905
               

               
Cow position:
               
chr6:1499819-1499598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
166, 25
               

               
Conread position:
               
690-898
               

               
Cow position:
               
chr6:23465861-23466064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
16, 27
               

               
Conread position:
               
690-902
               

               
Cow position:
               
chr6:35993757-35993547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
23, 48
               

               
Conread position:
               
690-902
               

               
Cow position:
               
chr6:45064843-45065055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
5, 160
               

               
Conread position:
               
690-904
               

               
Cow position:
               
chr6:16423874-16423659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
18, 28
               

               
Conread position:
               
691-833
               

               
Cow position:
               
chr6:54349864-54349724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
691-902
               

               
Cow position:
               
chr6:582100-582311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
20, 95
               

               
Conread position:
               
691-904
               

               
Cow position:
               
chr6:4691805-4692020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
38, 23
               

               
Conread position:
               
691-904
               

               
Cow position:
               
chr6:37332280-37332066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
83, 16
               

               
Conread position:
               
691-904
               

               
Cow position:
               
chr6:47799468-47799251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
691-904
               

               
Cow position:
               
chr6:58590445-58590228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
693-904
               

               
Cow position:
               
chr6:6401119-6400910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
156, 15
               

               
Conread position:
               
696-905
               

               
Cow position:
               
chr6:9452602-9452815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
697-904
               

               
Cow position:
               
chr6:28976874-28977085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 140
               

               
Conread position:
               
697-904
               

               
Cow position:
               
chr6:66375169-66375371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
699-904
               

               
Cow position:
               
chr6:60350126-60350336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
705-895
               

               
Cow position:
               
chr6:19259184-19259377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
705-903
               

               
Cow position:
               
chr6:53652196-53652002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
705-904
               

               
Cow position:
               
chr6:24004694-24004502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
705-920
               

               
Cow position:
               
chr6:50976206-50975992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
201, 184
               

               
Conread position:
               
706-904
               

               
Cow position:
               
chr6:12551427-12551227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
23, 91
               

               
Conread position:
               
707-926
               

               
Cow position:
               
chr6:7130724-7130952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
96, 209
               

               
Conread position:
               
709-895
               

               
Cow position:
               
chr6:38218819-38218637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
25, 7
               

               
Conread position:
               
709-904
               

               
Cow position:
               
chr6:36652575-36652378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
123, 28
               

               
Conread position:
               
710-838
               

               
Cow position:
               
chr6:28900479-28900352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
710-884
               

               
Cow position:
               
chr6:53090161-53089986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
145, 14
               

               
Conread position:
               
710-885
               

               
Cow position:
               
chr6:58597352-58597531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
13, 132
               

               
Conread position:
               
710-897
               

               
Cow position:
               
chr6:21869496-21869685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
710-901
               

               
Cow position:
               
chr6:54990848-54991041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
710-902
               

               
Cow position:
               
chr6:19681372-19681567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
141, 181
               

               
Conread position:
               
710-902
               

               
Cow position:
               
chr6:68652198-68652392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
710-905
               

               
Cow position:
               
chr6:47339203-47339399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
126, 168
               

               
Conread position:
               
710-930
               

               
Cow position:
               
chr6:1422639-1422417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
148, 138
               

               
Conread position:
               
711-902
               

               
Cow position:
               
chr6:32516958-32517139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
714-904
               

               
Cow position:
               
chr6:36470413-36470607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
122, 142
               

               
Conread position:
               
716-847
               

               
Cow position:
               
chr6:43651899-43651768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
716-901
               

               
Cow position:
               
chr6:32853334-32853148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
133, 74
               

               
Conread position:
               
716-904
               

               
Cow position:
               
chr6:47640286-47640474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
144, 8
               

               
Conread position:
               
717-835
               

               
Cow position:
               
chr6:57328248-57328364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
719-904
               

               
Cow position:
               
chr6:4864403-4864589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
719-904
               

               
Cow position:
               
chr6:31526190-31526002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
719-904
               

               
Cow position:
               
chr6:35613273-35613465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
723-904
               

               
Cow position:
               
chr6:38614952-38614775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
131, 61
               

               
Conread position:
               
724-898
               

               
Cow position:
               
chr6:59770363-59770192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
132, 44
               

               
Conread position:
               
724-904
               

               
Cow position:
               
chr6:56843293-56843114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
112, 60
               

               
Conread position:
               
728-891
               

               
Cow position:
               
chr6:54082854-54083019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
94, 102
               

               
Conread position:
               
736-904
               

               
Cow position:
               
chr6:15022420-15022589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
737-902
               

               
Cow position:
               
chr6:61608638-61608472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
737-904
               

               
Cow position:
               
chr6:23247840-23248006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
118, 48
               

               
Conread position:
               
739-904
               

               
Cow position:
               
chr6:899169-899331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
748-913
               

               
Cow position:
               
chr6:12197295-12197128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
105, 151
               

               
Conread position:
               
766-904
               

               
Cow position:
               
chr6:36493444-36493590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
46, 14
               

               
Conread position:
               
766-904
               

               
Cow position:
               
chr6:67615333-67615472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
770-904
               

               
Cow position:
               
chr6:24962238-24962101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
37, 0
               
Show alignments to all cow chromosomes.