Cow genome map
| Conread name: | Ss1.1-rspl23_o6.5 |
| Conread position: | 877-1243 |
| Cow position: | chr17:22552370-22552006 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 17, 11 |
| Conread position: | 877-1245 |
| Cow position: | chr17:22552790-22552424 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 242 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 17, 12 |
| Conread position: | 877-1307 |
| Cow position: | chr17:22552118-22551688 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 274 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 17, 12 |
| Conread position: | 893-1239 |
| Cow position: | chr17:22473580-22473924 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 233 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 898-1304 |
| Cow position: | chr17:22552938-22552531 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 268 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 287, 10 |
| Conread position: | 899-1174 |
| Cow position: | chr17:22498808-22498534 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 53, 10 |
| Conread position: | 899-1243 |
| Cow position: | chr17:22552517-22552174 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 215, 9 |
| Conread position: | 899-1243 |
| Cow position: | chr17:22589599-22589256 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 289, 9 |
| Conread position: | 899-1243 |
| Cow position: | chr17:22589935-22589592 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 225 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 215, 9 |
| Conread position: | 899-1248 |
| Cow position: | chr17:22452046-22451698 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 230 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 899-1248 |
| Cow position: | chr17:22552685-22552337 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 234 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 287, 9 |
| Conread position: | 899-1249 |
| Cow position: | chr17:22498976-22498627 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 285, 9 |
| Conread position: | 899-1254 |
| Cow position: | chr17:22473501-22473855 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 899-1254 |
| Cow position: | chr17:22499312-22498958 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 287, 9 |
| Conread position: | 899-1259 |
| Cow position: | chr17:22589851-22589492 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 234 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 215, 9 |
| Conread position: | 899-1262 |
| Cow position: | chr17:22552433-22552071 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 230 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 287, 14 |
| Conread position: | 899-1262 |
| Cow position: | chr17:22590187-22589825 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 214, 8 |
| Conread position: | 899-1271 |
| Cow position: | chr17:22499060-22498688 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 242 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 365, 9 |
| Conread position: | 899-1307 |
| Cow position: | chr17:22452214-22451805 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 364, 9 |
| Conread position: | 899-1308 |
| Cow position: | chr17:22499228-22498818 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 9 |
| Conread position: | 899-1308 |
| Cow position: | chr17:22551929-22551519 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 215, 9 |
| Conread position: | 899-1308 |
| Cow position: | chr17:22552853-22552443 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 9 |
| Conread position: | 903-1160 |
| Cow position: | chr17:22589427-22589173 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 50, 8 |
| Conread position: | 903-1249 |
| Cow position: | chr17:22553101-22552756 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 207, 6 |
| Conread position: | 903-1254 |
| Cow position: | chr17:22473337-22473687 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 230 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 903-1262 |
| Cow position: | chr17:22499140-22498782 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 237 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 903-1271 |
| Cow position: | chr17:22473421-22473789 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 361, 5 |
| Conread position: | 904-1234 |
| Cow position: | chr17:22452379-22452048 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 905-1172 |
| Cow position: | chr17:22498719-22498461 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 188, 0 |
| Conread position: | 905-1254 |
| Cow position: | chr17:22551840-22551491 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 210, 221 |
| Conread position: | 905-1270 |
| Cow position: | chr17:22589762-22589396 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 236 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 64, 69 |
| Conread position: | 905-1308 |
| Cow position: | chr17:22552260-22551855 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 296 |
| Conread position: | 906-1243 |
| Cow position: | chr17:22499390-22499053 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 54, 67 |
| Conread position: | 906-1254 |
| Cow position: | chr17:22452124-22451776 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 280, 298 |
| Conread position: | 911-1243 |
| Cow position: | chr17:22553010-22552678 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 199, 222 |
| Conread position: | 911-1257 |
| Cow position: | chr17:22498881-22498535 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 147, 117 |
| Conread position: | 913-1261 |
| Cow position: | chr17:22473262-22473610 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 917-1262 |
| Cow position: | chr17:22590254-22589909 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 220 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 113, 119 |
| Conread position: | 923-1261 |
| Cow position: | chr17:22589996-22589658 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 105, 113 |
| Conread position: | 923-1307 |
| Cow position: | chr17:22552158-22551772 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 187, 207 |
| Conread position: | 924-1261 |
| Cow position: | chr17:22590079-22589742 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 224 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 46, 51 |
| Conread position: | 951-1236 |
| Cow position: | chr17:22590304-22590019 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 75, 85 |
| Conread position: | 975-1232 |
| Cow position: | chr17:22452391-22452134 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 143, 126 |
| Conread position: | 983-1308 |
| Cow position: | chr17:22499395-22499070 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 301, 9 |
| Conread position: | 999-1250 |
| Cow position: | chr17:22553174-22552923 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1038-1262 |
| Cow position: | chr17:22452412-22452188 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 20, 25 |
Show alignments to all cow chromosomes.